Electron Microscopy Data Bank

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Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)

Release date: Dec. 8, 2021
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 7nax
Q-score: 0.389

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
Complete bacterial 30s ribosomal subunit assembly complex state i (consensus refinement) (Complex from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
16s rrna (499 kDa, RNA from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)

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EMD-11751

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Bacterial 30S ribosomal subunit assembly complex state M (head domain)

Release date: July 7, 2021
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7af3
Q-score: 0.525

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Bacterial 30s ribosomal subunit assembly complex state m (head domain) (Complex from Escherichia coli)
16s rrna (head) (499 kDa, RNA from Escherichia coli)

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EMD-11753

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Bacterial 30S ribosomal subunit assembly complex state I (head domain)

Release date: July 7, 2021
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 7af5
Q-score: 0.522

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state i (head domain) (Complex from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
16srrna (head domain of the 30s ribosome) (499 kDa, RNA from Escherichia coli)

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EMD-11756

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Bacterial 30S ribosomal subunit assembly complex state E (head domain)

Release date: July 7, 2021
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 7af8
Q-score: 0.534

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state e (head domain) (Complex from Escherichia coli)
16srrna (head domain of the 30s ribosome (499 kDa, RNA from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Zinc ion (65 Da, Ligand)

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EMD-11758

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Bacterial 30S ribosomal subunit assembly complex state F (head domain)

Release date: July 7, 2021
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 7afa
Q-score: 0.468

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Bacterial 30s ribosomal subunit assembly complex state f (head domain) (Complex from Escherichia coli)
16srrna (head domain of the 30s ribosome) (499 kDa, RNA from Escherichia coli)

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EMD-11761

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Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Release date: July 7, 2021
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 7afd
Q-score: 0.407

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state a (head domain) (Complex from Escherichia coli)
Magnesium ion (24 Da, Ligand)
16srrna of the head domain (residue c931 to g1386) (499 kDa, RNA from Escherichia coli)

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EMD-11765

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Bacterial 30S ribosomal subunit assembly complex state C (head domain)

Release date: July 7, 2021
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7afh
Q-score: 0.386

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state c (head domain) (Complex from Escherichia coli)
Magnesium ion (24 Da, Ligand)
16srrna (head domain of the 30s ribosome) (499 kDa, RNA from Escherichia coli)

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EMD-11766

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Bacterial 30S ribosomal subunit assembly complex state C (body domain)

Release date: July 7, 2021
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7afi
Q-score: 0.406

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Ribosome maturation factor rimp (Complex from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state c (body domain) (Complex)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
Ribosome maturation factor rimp (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
16srrna (499 kDa, RNA from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
Ribosomal subunit and rna (Complex from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)

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EMD-11768

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Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Release date: July 7, 2021
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7afk
Q-score: 0.315

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state d (head domain) (Complex from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
16srrna (head domain of the 30s ribosome) (499 kDa, RNA from Escherichia coli)

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EMD-11769

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Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Release date: July 7, 2021
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7afl
Q-score: 0.347

Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso JP, Lavin JL, Kaminishi T, Capuni R, Dhimole N, de Astigarraga E, Gil-Carton D, Fucini P, Connell SR

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abf7547 Pubmed: 34088665 ]

Sample:

30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state d (body domain) (Complex from Escherichia coli)
Bacterial 30s ribosomal subunit assembly complex state d (body domain) (Complex)
16srrna (499 kDa, RNA from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
Ribosome maturation factor rimp (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
Ribosome-binding factor a (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)

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