48S late-stage initiation complex with m6A mRNA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8p03
Q-score: 0.509
Guca E, Alarcon R, Palo MZ, Santos L, Alonso-Gil S, Davyt M, de Lima LHF, Boissier F, Das S, Zagrovic B, Puglisi JD, Hashem Y, Ignatova Z
Mol Cell (2024) 84 pp. 584-595.e6 [ Pubmed: 38244546 DOI: doi:10.1016/j.molcel.2023.12.028 ]
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es1 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- M6a-methylated mrna (2 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 4c (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit 1 (32 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Atp binding cassette subfamily e member 1 (66 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 48s late-stage initiation complex with m6a-modified mrna (Complex from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Initiator methionylated trna (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (601 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (23 kDa, Protein from Oryctolagus cuniculus)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7d43
Q-score: 0.385
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Eukaryotic translation initiation factor 2 subunit 2 (38 kDa, Protein from Homo sapiens)
- Eif2(ap) (Complex from Homo sapiens)
- Eif2b (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 3 (51 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7d44
Q-score: 0.421
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Eif2(ap) (Complex from Homo sapiens)
- Eif2b (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7d45
Q-score: 0.462
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Eif2(ap) (Complex from Homo sapiens)
- Eif2b (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7d46
Q-score: 0.461
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip5
Q-score: 0.356
Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T
Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Human)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- 60s ribosomal protein l10a (24 kDa, Protein from Human)
- 60s ribosomal protein l3 (46 kDa, Protein from Human)
- 60s ribosomal protein l5 (34 kDa, Protein from Human)
- 60s ribosomal protein l7a (30 kDa, Protein from Human)
- 5s ribosomal rna (38 kDa, RNA from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 60s ribosomal protein l18a (20 kDa, Protein from Human)
- 60s ribosomal protein l27 (15 kDa, Protein from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- Mrna (1 kDa, RNA from Human)
- 60s ribosomal protein l14 (23 kDa, Protein from Human)
- 60s ribosomal protein l37a (10 kDa, Protein from Human)
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 60s ribosomal protein l19 (23 kDa, Protein from Human)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 60s ribosomal protein l6 (32 kDa, Protein from Human)
- 60s ribosomal protein l35a (12 kDa, Protein from Human)
- 18s ribosomal rna (602 kDa, RNA from Human)
- Nascent peptide (1 kDa, Protein from Human)
- 60s ribosomal protein l4 (47 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- 60s ribosomal protein l30 (12 kDa, Protein from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 60s ribosomal protein l35 (14 kDa, Protein from Human)
- 60s ribosomal protein l24 (17 kDa, Protein from Human)
- 60s ribosomal protein l36a (12 kDa, Protein from Human)
- 60s ribosomal protein l23a (17 kDa, Protein from Human)
- 60s ribosomal protein l34 (13 kDa, Protein from Human)
- 60s ribosomal protein l11 (20 kDa, Protein from Human)
- 60s ribosomal protein l13a (23 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 60s ribosomal protein l15 (24 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 60s ribosomal protein l26 (17 kDa, Protein from Human)
- 60s ribosomal protein l18 (21 kDa, Protein from Human)
- 60s ribosomal protein l32 (15 kDa, Protein from Human)
- 60s ribosomal protein l21 (18 kDa, Protein from Human)
- 5.8s ribosomal rna (50 kDa, RNA from Human)
- 60s ribosomal protein l13 (24 kDa, Protein from Human)
- 60s ribosomal protein l27a (16 kDa, Protein from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 60s ribosomal protein l22 (14 kDa, Protein from Human)
- 60s ribosomal protein l9 (21 kDa, Protein from Human)
- 60s ribosomal protein l28 (15 kDa, Protein from Human)
- 60s ribosomal protein l8 (28 kDa, Protein from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 60s ribosomal protein l29 (17 kDa, Protein from Human)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- 60s ribosomal protein l10-like (24 kDa, Protein from Human)
- 60s ribosomal protein l31 (14 kDa, Protein from Human)
- 60s ribosomal protein l7 (29 kDa, Protein from Human)
- 60s ribosomal protein l17 (21 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- Human 80s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 60s ribosomal protein l23 (14 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- 40s ribosomal protein s30 (6 kDa, Protein from Human)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- 60s ribosomal protein l36 (12 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 60s ribosomal protein l37 (11 kDa, Protein from Human)
- 28s ribosomal rna (1 MDa, RNA from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- P-site trna (24 kDa, RNA from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- 60s ribosomal protein l38 (8 kDa, Protein from Human)
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6ip6
Q-score: 0.184
Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T
Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Human)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- 60s ribosomal protein l3 (46 kDa, Protein from Human)
- 60s ribosomal protein l5 (34 kDa, Protein from Human)
- 60s ribosomal protein l7a (30 kDa, Protein from Human)
- 5s ribosomal rna (38 kDa, RNA from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 60s ribosomal protein l18a (20 kDa, Protein from Human)
- 60s ribosomal protein l27 (15 kDa, Protein from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- Mrna (1 kDa, RNA from Human)
- 60s ribosomal protein l14 (23 kDa, Protein from Human)
- 60s ribosomal protein l37a (10 kDa, Protein from Human)
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 60s ribosomal protein l19 (23 kDa, Protein from Human)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 60s ribosomal protein l6 (32 kDa, Protein from Human)
- 60s ribosomal protein l35a (12 kDa, Protein from Human)
- 18s ribosomal rna (602 kDa, RNA from Human)
- Nascent peptide (1 kDa, Protein from Human)
- 60s ribosomal protein l4 (47 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- 60s ribosomal protein l30 (12 kDa, Protein from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 60s ribosomal protein l35 (14 kDa, Protein from Human)
- 60s ribosomal protein l24 (17 kDa, Protein from Human)
- 60s ribosomal protein l36a (12 kDa, Protein from Human)
- 60s ribosomal protein l23a (17 kDa, Protein from Human)
- 60s ribosomal protein l34 (13 kDa, Protein from Human)
- 60s ribosomal protein l11 (20 kDa, Protein from Human)
- 60s ribosomal protein l13a (23 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 60s ribosomal protein l15 (24 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 60s ribosomal protein l26 (17 kDa, Protein from Human)
- 60s ribosomal protein l18 (21 kDa, Protein from Human)
- 60s ribosomal protein l32 (15 kDa, Protein from Human)
- 60s ribosomal protein l21 (18 kDa, Protein from Human)
- 5.8s ribosomal rna (50 kDa, RNA from Human)
- 60s ribosomal protein l13 (24 kDa, Protein from Human)
- 60s ribosomal protein l27a (16 kDa, Protein from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 60s ribosomal protein l22 (14 kDa, Protein from Human)
- 60s ribosomal protein l9 (21 kDa, Protein from Human)
- 60s ribosomal protein l28 (15 kDa, Protein from Human)
- 60s ribosomal protein l8 (28 kDa, Protein from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 60s ribosomal protein l29 (17 kDa, Protein from Human)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- 60s ribosomal protein l10-like (24 kDa, Protein from Human)
- 60s ribosomal protein l31 (14 kDa, Protein from Human)
- 60s ribosomal protein l7 (29 kDa, Protein from Human)
- Hcv-ires rna (93 kDa, RNA from Human)
- 60s ribosomal protein l17 (21 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- Human 80s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 60s ribosomal protein l23 (14 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- 40s ribosomal protein s30 (6 kDa, Protein from Human)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- 60s ribosomal protein l36 (12 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 60s ribosomal protein l37 (11 kDa, Protein from Human)
- 28s ribosomal rna (1 MDa, RNA from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- P-site trna (24 kDa, RNA from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- 60s ribosomal protein l38 (8 kDa, Protein from Human)
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip8
Q-score: 0.397
Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T
Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Human)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- 60s ribosomal protein l3 (46 kDa, Protein from Human)
- 60s ribosomal protein l5 (34 kDa, Protein from Human)
- 60s ribosomal protein l7a (30 kDa, Protein from Human)
- 5s ribosomal rna (38 kDa, RNA from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 60s ribosomal protein l18a (20 kDa, Protein from Human)
- 60s ribosomal protein l27 (15 kDa, Protein from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- 60s ribosomal protein l14 (23 kDa, Protein from Human)
- 60s ribosomal protein l37a (10 kDa, Protein from Human)
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 60s ribosomal protein l19 (23 kDa, Protein from Human)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 60s ribosomal protein l6 (32 kDa, Protein from Human)
- 60s ribosomal protein l35a (12 kDa, Protein from Human)
- 18s ribosomal rna (602 kDa, RNA from Human)
- Nascent peptide (1 kDa, Protein from Human)
- 60s ribosomal protein l4 (47 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- 60s ribosomal protein l30 (12 kDa, Protein from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 60s ribosomal protein l35 (14 kDa, Protein from Human)
- 60s ribosomal protein l24 (17 kDa, Protein from Human)
- 60s ribosomal protein l36a (12 kDa, Protein from Human)
- 60s ribosomal protein l23a (17 kDa, Protein from Human)
- 60s ribosomal protein l34 (13 kDa, Protein from Human)
- 60s ribosomal protein l11 (20 kDa, Protein from Human)
- 60s ribosomal protein l13a (23 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 60s ribosomal protein l15 (24 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 60s ribosomal protein l26 (17 kDa, Protein from Human)
- 60s ribosomal protein l18 (21 kDa, Protein from Human)
- 60s ribosomal protein l32 (15 kDa, Protein from Human)
- 60s ribosomal protein l21 (18 kDa, Protein from Human)
- 5.8s ribosomal rna (50 kDa, RNA from Human)
- 60s ribosomal protein l13 (24 kDa, Protein from Human)
- 60s ribosomal protein l27a (16 kDa, Protein from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 60s ribosomal protein l22 (14 kDa, Protein from Human)
- 60s ribosomal protein l9 (21 kDa, Protein from Human)
- 60s ribosomal protein l28 (15 kDa, Protein from Human)
- 60s ribosomal protein l8 (28 kDa, Protein from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 60s ribosomal protein l29 (17 kDa, Protein from Human)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- 60s ribosomal protein l10-like (24 kDa, Protein from Human)
- 60s ribosomal protein l31 (14 kDa, Protein from Human)
- 60s ribosomal protein l7 (29 kDa, Protein from Human)
- Hcv-ires rna (93 kDa, RNA from Human)
- 60s ribosomal protein l17 (21 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- Human 80s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 60s ribosomal protein l23 (14 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- 40s ribosomal protein s30 (6 kDa, Protein from Human)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- 60s ribosomal protein l36 (12 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 60s ribosomal protein l37 (11 kDa, Protein from Human)
- Mrna (3 kDa, RNA from Human)
- 28s ribosomal rna (1 MDa, RNA from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- P-site trna (24 kDa, RNA from Human)
- Eukaryotic peptide chain release factor subunit 1 (48 kDa, Protein from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- 60s ribosomal protein l38 (8 kDa, Protein from Human)
human m-AAA protease AFG3L2, substrate-bound
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6nyy
Q-score: 0.481
Puchades C, Ding B, Song A, Wiseman RL, Lander GC, Glynn SE
Mol Cell (2019) 75 pp. 1073- [ DOI: doi:10.1016/j.molcel.2019.06.016 Pubmed: 31327635 ]
- Afg3l2 (360 kDa, Cellular component from Homo sapiens)
- Afg3-like protein 2 (58 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Substrate (799 Da, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)