Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ipa
Q-score: 0.471
Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T
Nat Chem Biol (2024) 20 pp. 605-614 [ Pubmed: 38267667 DOI: doi:10.1038/s41589-023-01513-0 ]
- 40s ribosomal protein us11 (16 kDa, Protein from Triticum aestivum)
- Wheat 80s ribosome stalled on aug-stop boron dependently with cycloheximide (Complex from Triticum aestivum)
- 40s ribosomal protein es17 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el6 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us15 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul5 (20 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul6 (21 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul22 (19 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein el8 (29 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el21 (18 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el40 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el34 (13 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us19 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us8 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal rna (1 MDa, RNA from Triticum aestivum)
- 60s ribosomal protein el18 (21 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el41 (3 kDa, Protein from Oryza sativa)
- 60s ribosomal protein ul3 (44 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el31 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el38 (8 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul15 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es4 (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es25 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es1 (30 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el29 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul13 (23 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el33 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es10 (20 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul2 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul29 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul23 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us13 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul4 (44 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us17 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us10 (14 kDa, Protein from Triticum aestivum)
- 5.8s ribosomal rna (51 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein el24 (18 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us4 (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es28 (9 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul30 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul18 (34 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el30 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us5 (29 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el37 (10 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es26 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es19 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el20 (21 kDa, Protein from Triticum aestivum)
- Eukaryotic release factor 1 (49 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el14 (15 kDa, Protein from Triticum aestivum)
- Rack1 (36 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es7 (22 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el42 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us2 (33 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us9 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el27 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us14 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el36 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es6 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el43 (10 kDa, Protein from Triticum aestivum)
- 5s ribosomal rna (38 kDa, RNA from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein us3 (25 kDa, Protein from Triticum aestivum)
- 18s ribosomal rna (583 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein el39 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us12 (15 kDa, Protein from Triticum aestivum)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- 40s ribosomal protein es30 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el28 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul16 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es8 (25 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el19 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es21 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es27 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es24 (15 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el15 (24 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul14 (15 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein ul24 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el22 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el13 (24 kDa, Protein from Triticum aestivum)
- Trnai (24 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein el32 (15 kDa, Protein from Triticum aestivum)
- Mrna (2 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein us7 (22 kDa, Protein from Triticum aestivum)
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ipb
Q-score: 0.466
Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T
Nat Chem Biol (2024) 20 pp. 605-614 [ Pubmed: 38267667 DOI: doi:10.1038/s41589-023-01513-0 ]
- 40s ribosomal protein us11 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es17 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el6 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us15 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul5 (20 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul6 (21 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul22 (19 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein el8 (29 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el21 (18 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el40 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el34 (13 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us19 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us8 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal rna (1 MDa, RNA from Triticum aestivum)
- 60s ribosomal protein el18 (21 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el41 (3 kDa, Protein from Oryza sativa)
- 60s ribosomal protein ul3 (44 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el31 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el38 (8 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul15 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es4 (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es25 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es1 (30 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el29 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul13 (23 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el33 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es10 (20 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul2 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul29 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul23 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us13 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul4 (44 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us17 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us10 (14 kDa, Protein from Triticum aestivum)
- 5.8s ribosomal rna (51 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein el24 (18 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us4 (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es28 (9 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul30 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul18 (34 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el30 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us5 (29 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el37 (10 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es26 (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es19 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el20 (21 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el14 (15 kDa, Protein from Triticum aestivum)
- Rack1 (36 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es7 (22 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el42 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us2 (33 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us9 (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el27 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us14 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el36 (12 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es6 (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el43 (10 kDa, Protein from Triticum aestivum)
- 5s ribosomal rna (38 kDa, RNA from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein us3 (25 kDa, Protein from Triticum aestivum)
- 18s ribosomal rna (583 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein el39 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein us12 (15 kDa, Protein from Triticum aestivum)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- 40s ribosomal protein es30 (6 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el28 (16 kDa, Protein from Triticum aestivum)
- Wheat 80s ribosome pausing on aug-stop with cycloheximide (Complex from Triticum aestivum)
- 60s ribosomal protein ul16 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es8 (25 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el19 (24 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es21 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es27 (9 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein es24 (15 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el15 (24 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul14 (15 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein ul24 (17 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el22 (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el13 (24 kDa, Protein from Triticum aestivum)
- Trnai (24 kDa, RNA from Triticum aestivum)
- 60s ribosomal protein el32 (15 kDa, Protein from Triticum aestivum)
- Mrna (2 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein us7 (22 kDa, Protein from Triticum aestivum)
human delta-METTL18 60S ribosome
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 7f5s
Q-score: 0.561
Matsuura-Suzuki E, Shimazu T, Takahashi M, Kotoshiba K, Suzuki T, Kashiwagi K, Sohtome Y, Akakabe M, Sodeoka M, Dohmae N, Ito T, Shinkai Y, Iwasaki S
eLife (2022) 11 [ DOI: doi:10.7554/eLife.72780 Pubmed: 35674491 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Human)
- 5.8s rrna (50 kDa, RNA from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 60s ribosomal protein l23 (14 kDa, Protein from Human)
- 60s ribosomal protein l9 (21 kDa, Protein from Human)
- 60s ribosomal protein l30 (12 kDa, Protein from Human)
- 60s ribosomal protein l8 (28 kDa, Protein from Human)
- 60s ribosomal protein l35 (14 kDa, Protein from Human)
- 60s ribosomal protein l24 (17 kDa, Protein from Human)
- 60s ribosomal protein l3 (46 kDa, Protein from Human)
- 60s ribosomal protein l29 (17 kDa, Protein from Human)
- 60s ribosomal protein l31 (14 kDa, Protein from Human)
- 60s ribosomal protein l6 (32 kDa, Protein from Human)
- 60s ribosomal protein l36a (12 kDa, Protein from Human)
- 60s (Complex from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Human)
- 60s ribosomal protein l36 (12 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l11 (20 kDa, Protein from Human)
- 60s ribosomal protein l13a (23 kDa, Protein from Human)
- 60s ribosomal protein l5 (34 kDa, Protein from Human)
- 60s ribosomal protein l15 (24 kDa, Protein from Human)
- 60s ribosomal protein l23a (17 kDa, Protein from Human)
- 60s ribosomal protein l27 (15 kDa, Protein from Human)
- 60s ribosomal protein l4 (47 kDa, Protein from Human)
- 28s rrna (1 MDa, RNA from Human)
- 60s ribosomal protein l7a (30 kDa, Protein from Human)
- Water (18 Da, Ligand)
- 60s ribosomal protein l10 (24 kDa, Protein from Human)
- 60s ribosomal protein l26 (17 kDa, Protein from Human)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
- 60s ribosomal protein l18 (21 kDa, Protein from Human)
- 60s ribosomal protein l32 (15 kDa, Protein from Human)
- 60s ribosomal protein l37a (10 kDa, Protein from Human)
- Magnesium ion (24 Da, Ligand)
- 5s rrna (38 kDa, RNA from Human)
- 60s ribosomal protein l18a (20 kDa, Protein from Human)
- 60s ribosomal protein l21 (18 kDa, Protein from Human)
- 60s ribosomal protein l14 (23 kDa, Protein from Human)
- 60s ribosomal protein l22 (14 kDa, Protein from Human)
- 60s ribosomal protein l17 (21 kDa, Protein from Human)
- 60s ribosomal protein l7 (29 kDa, Protein from Human)
- 60s ribosomal protein l13 (24 kDa, Protein from Human)
- 60s ribosomal protein l35a (12 kDa, Protein from Human)
- 60s ribosomal protein l28 (15 kDa, Protein from Human)
- 60s ribosomal protein l19 (23 kDa, Protein from Human)
- 60s ribosomal protein l27a (16 kDa, Protein from Human)
- 60s ribosomal protein l37 (11 kDa, Protein from Human)
- 60s ribosomal protein l38 (8 kDa, Protein from Human)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7cpj
Q-score: 0.502
Fujita T, Yokoyama T, Shirouzu M, Taguchi H, Ito T, Iwasaki S
RNA (2022) 28 pp. 290-302 [ Pubmed: 34906996 DOI: doi:10.1261/rna.078188.120 ]
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli KTE112)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli KTE73)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli MS 198-1)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli 2.3916)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli UMEA 3718-1)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli 2.3916)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli 907713)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli MS 117-3)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli KTE112)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli 99.0741)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli 4.0522)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli O26:H11)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli O121:H19)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli 908573)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli KTE75)
- Isoleucine (131 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli KTE112)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli 99.0741)
- Proline (115 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli 113303)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli HVH 87 (4-5977630))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli 3-373-03 S4 C2)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli O177)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli KTE73)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli 2362-75)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli O7:K1 (strain IAI39 / ExPEC))
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli KTE64)
- P/p trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli G3/10)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli H461)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli M863)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli DEC1D)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli MS 84-1)
- Ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
- Mrna (910 Da, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli TA054)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli H420)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7d43
Q-score: 0.385
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Eukaryotic translation initiation factor 2 subunit 2 (38 kDa, Protein from Homo sapiens)
- Eif2(ap) (Complex from Homo sapiens)
- Eif2b (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 3 (51 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7d44
Q-score: 0.421
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Eif2(ap) (Complex from Homo sapiens)
- Eif2b (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7d45
Q-score: 0.462
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Eif2(ap) (Complex from Homo sapiens)
- Eif2b (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7d46
Q-score: 0.461
Zyryanova AF, Kashiwagi K, Rato C, Harding HP, Crespillo-Casado A, Perera LA, Sakamoto A, Nishimoto M, Yonemochi M, Shirouzu M, Ito T, Ron D
Mol Cell (2021) 81 pp. 88- [ DOI: doi:10.1016/j.molcel.2020.10.031 Pubmed: 33220178 ]
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Complex of eif2b with eif2(ap) (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip5
Q-score: 0.356
Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T
Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Human)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- 60s ribosomal protein l10a (24 kDa, Protein from Human)
- 60s ribosomal protein l3 (46 kDa, Protein from Human)
- 60s ribosomal protein l5 (34 kDa, Protein from Human)
- 60s ribosomal protein l7a (30 kDa, Protein from Human)
- 5s ribosomal rna (38 kDa, RNA from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 60s ribosomal protein l18a (20 kDa, Protein from Human)
- 60s ribosomal protein l27 (15 kDa, Protein from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- Mrna (1 kDa, RNA from Human)
- 60s ribosomal protein l14 (23 kDa, Protein from Human)
- 60s ribosomal protein l37a (10 kDa, Protein from Human)
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 60s ribosomal protein l19 (23 kDa, Protein from Human)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 60s ribosomal protein l6 (32 kDa, Protein from Human)
- 60s ribosomal protein l35a (12 kDa, Protein from Human)
- 18s ribosomal rna (602 kDa, RNA from Human)
- Nascent peptide (1 kDa, Protein from Human)
- 60s ribosomal protein l4 (47 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- 60s ribosomal protein l30 (12 kDa, Protein from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 60s ribosomal protein l35 (14 kDa, Protein from Human)
- 60s ribosomal protein l24 (17 kDa, Protein from Human)
- 60s ribosomal protein l36a (12 kDa, Protein from Human)
- 60s ribosomal protein l23a (17 kDa, Protein from Human)
- 60s ribosomal protein l34 (13 kDa, Protein from Human)
- 60s ribosomal protein l11 (20 kDa, Protein from Human)
- 60s ribosomal protein l13a (23 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 60s ribosomal protein l15 (24 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 60s ribosomal protein l26 (17 kDa, Protein from Human)
- 60s ribosomal protein l18 (21 kDa, Protein from Human)
- 60s ribosomal protein l32 (15 kDa, Protein from Human)
- 60s ribosomal protein l21 (18 kDa, Protein from Human)
- 5.8s ribosomal rna (50 kDa, RNA from Human)
- 60s ribosomal protein l13 (24 kDa, Protein from Human)
- 60s ribosomal protein l27a (16 kDa, Protein from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 60s ribosomal protein l22 (14 kDa, Protein from Human)
- 60s ribosomal protein l9 (21 kDa, Protein from Human)
- 60s ribosomal protein l28 (15 kDa, Protein from Human)
- 60s ribosomal protein l8 (28 kDa, Protein from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 60s ribosomal protein l29 (17 kDa, Protein from Human)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- 60s ribosomal protein l10-like (24 kDa, Protein from Human)
- 60s ribosomal protein l31 (14 kDa, Protein from Human)
- 60s ribosomal protein l7 (29 kDa, Protein from Human)
- 60s ribosomal protein l17 (21 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- Human 80s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 60s ribosomal protein l23 (14 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- 40s ribosomal protein s30 (6 kDa, Protein from Human)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- 60s ribosomal protein l36 (12 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 60s ribosomal protein l37 (11 kDa, Protein from Human)
- 28s ribosomal rna (1 MDa, RNA from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- P-site trna (24 kDa, RNA from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- 60s ribosomal protein l38 (8 kDa, Protein from Human)
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6ip6
Q-score: 0.184
Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T
Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Human)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- 60s ribosomal protein l3 (46 kDa, Protein from Human)
- 60s ribosomal protein l5 (34 kDa, Protein from Human)
- 60s ribosomal protein l7a (30 kDa, Protein from Human)
- 5s ribosomal rna (38 kDa, RNA from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 60s ribosomal protein l18a (20 kDa, Protein from Human)
- 60s ribosomal protein l27 (15 kDa, Protein from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- Mrna (1 kDa, RNA from Human)
- 60s ribosomal protein l14 (23 kDa, Protein from Human)
- 60s ribosomal protein l37a (10 kDa, Protein from Human)
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 60s ribosomal protein l19 (23 kDa, Protein from Human)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 60s ribosomal protein l6 (32 kDa, Protein from Human)
- 60s ribosomal protein l35a (12 kDa, Protein from Human)
- 18s ribosomal rna (602 kDa, RNA from Human)
- Nascent peptide (1 kDa, Protein from Human)
- 60s ribosomal protein l4 (47 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- 60s ribosomal protein l30 (12 kDa, Protein from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 60s ribosomal protein l35 (14 kDa, Protein from Human)
- 60s ribosomal protein l24 (17 kDa, Protein from Human)
- 60s ribosomal protein l36a (12 kDa, Protein from Human)
- 60s ribosomal protein l23a (17 kDa, Protein from Human)
- 60s ribosomal protein l34 (13 kDa, Protein from Human)
- 60s ribosomal protein l11 (20 kDa, Protein from Human)
- 60s ribosomal protein l13a (23 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 60s ribosomal protein l15 (24 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 60s ribosomal protein l26 (17 kDa, Protein from Human)
- 60s ribosomal protein l18 (21 kDa, Protein from Human)
- 60s ribosomal protein l32 (15 kDa, Protein from Human)
- 60s ribosomal protein l21 (18 kDa, Protein from Human)
- 5.8s ribosomal rna (50 kDa, RNA from Human)
- 60s ribosomal protein l13 (24 kDa, Protein from Human)
- 60s ribosomal protein l27a (16 kDa, Protein from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 60s ribosomal protein l22 (14 kDa, Protein from Human)
- 60s ribosomal protein l9 (21 kDa, Protein from Human)
- 60s ribosomal protein l28 (15 kDa, Protein from Human)
- 60s ribosomal protein l8 (28 kDa, Protein from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 60s ribosomal protein l29 (17 kDa, Protein from Human)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- 60s ribosomal protein l10-like (24 kDa, Protein from Human)
- 60s ribosomal protein l31 (14 kDa, Protein from Human)
- 60s ribosomal protein l7 (29 kDa, Protein from Human)
- Hcv-ires rna (93 kDa, RNA from Human)
- 60s ribosomal protein l17 (21 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- Human 80s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 60s ribosomal protein l23 (14 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- 40s ribosomal protein s30 (6 kDa, Protein from Human)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- 60s ribosomal protein l36 (12 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 60s ribosomal protein l37 (11 kDa, Protein from Human)
- 28s ribosomal rna (1 MDa, RNA from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- P-site trna (24 kDa, RNA from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- 60s ribosomal protein l38 (8 kDa, Protein from Human)