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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND microscope_name:"FEI TECNAI ARCTICA" AND author_name:"Imataka H"

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EMD-9701

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Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Release date: May 29, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip5
Q-score: 0.356

Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T

Mol Cell (2019) 74 pp. 1205-1214.e8 [ Pubmed: 31080011 DOI: doi:10.1016/j.molcel.2019.04.022 ]

Sample:

40s ribosomal protein s5 (22 kDa, Protein from Human)
60s ribosomal protein l41 (3 kDa, Protein from Human)
40s ribosomal protein s8 (24 kDa, Protein from Human)
60s ribosomal protein l7a (30 kDa, Protein from Human)
60s ribosomal protein l11 (20 kDa, Protein from Human)
60s ribosomal protein l18 (21 kDa, Protein from Human)
40s ribosomal protein s13 (17 kDa, Protein from Human)
60s ribosomal protein l35 (14 kDa, Protein from Human)
28s ribosomal rna (1 MDa, RNA from Human)
60s ribosomal protein l39 (6 kDa, Protein from Human)
40s ribosomal protein s19 (16 kDa, Protein from Human)
60s ribosomal protein l23 (14 kDa, Protein from Human)
40s ribosomal protein s28 (7 kDa, Protein from Human)
40s ribosomal protein s15 (17 kDa, Protein from Human)
5s ribosomal rna (38 kDa, RNA from Human)
40s ribosomal protein s17 (15 kDa, Protein from Human)
60s ribosomal protein l36a (12 kDa, Protein from Human)
60s ribosomal protein l31 (14 kDa, Protein from Human)
40s ribosomal protein sa (32 kDa, Protein from Human)
60s ribosomal protein l10-like (24 kDa, Protein from Human)
60s ribosomal protein l36 (12 kDa, Protein from Human)
40s ribosomal protein s24 (15 kDa, Protein from Human)
60s ribosomal protein l10a (24 kDa, Protein from Human)
40s ribosomal protein s21 (9 kDa, Protein from Human)
60s ribosomal protein l29 (17 kDa, Protein from Human)
40s ribosomal protein s27 (9 kDa, Protein from Human)
60s ribosomal protein l23a (17 kDa, Protein from Human)
40s ribosomal protein s3a (30 kDa, Protein from Human)
60s ribosomal protein l5 (34 kDa, Protein from Human)
60s ribosomal protein l18a (20 kDa, Protein from Human)
60s ribosomal protein l26 (17 kDa, Protein from Human)
60s ribosomal protein l14 (23 kDa, Protein from Human)
60s ribosomal protein l27a (16 kDa, Protein from Human)
60s ribosomal protein l21 (18 kDa, Protein from Human)
40s ribosomal protein s9 (22 kDa, Protein from Human)
5.8s ribosomal rna (50 kDa, RNA from Human)
Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
40s ribosomal protein s30 (6 kDa, Protein from Human)
60s ribosomal protein l15 (24 kDa, Protein from Human)
40s ribosomal protein s10 (18 kDa, Protein from Human)
60s ribosomal protein l37 (11 kDa, Protein from Human)
60s ribosomal protein l8 (28 kDa, Protein from Human)
40s ribosomal protein s3 (26 kDa, Protein from Human)
60s ribosomal protein l4 (47 kDa, Protein from Human)
Nascent peptide (1 kDa, Protein from Human)
40s ribosomal protein s26 (13 kDa, Protein from Human)
60s ribosomal protein l34 (13 kDa, Protein from Human)
60s ribosomal protein l28 (15 kDa, Protein from Human)
60s ribosomal protein l17 (21 kDa, Protein from Human)
40s ribosomal protein s23 (15 kDa, Protein from Human)
40s ribosomal protein s18 (17 kDa, Protein from Human)
60s ribosomal protein l7 (29 kDa, Protein from Human)
60s ribosomal protein l22 (14 kDa, Protein from Human)
40s ribosomal protein s16 (16 kDa, Protein from Human)
60s ribosomal protein l13 (24 kDa, Protein from Human)
60s ribosomal protein l13a (23 kDa, Protein from Human)
40s ribosomal protein s15a (14 kDa, Protein from Human)
Mrna (1 kDa, RNA from Human)
40s ribosomal protein s12 (14 kDa, Protein from Human)
40s ribosomal protein s7 (22 kDa, Protein from Human)
60s ribosomal protein l6 (32 kDa, Protein from Human)
Human 80s ribosome (Complex from Homo sapiens)
18s ribosomal rna (602 kDa, RNA from Human)
60s ribosomal protein l24 (17 kDa, Protein from Human)
P-site trna (24 kDa, RNA from Human)
40s ribosomal protein s14 (16 kDa, Protein from Human)
40s ribosomal protein s11 (18 kDa, Protein from Human)
60s ribosomal protein l37a (10 kDa, Protein from Human)
60s ribosomal protein l30 (12 kDa, Protein from Human)
60s ribosomal protein l9 (21 kDa, Protein from Human)
60s ribosomal protein l38 (8 kDa, Protein from Human)
40s ribosomal protein s2 (31 kDa, Protein from Human)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
40s ribosomal protein s29 (6 kDa, Protein from Human)
60s ribosomal protein l32 (15 kDa, Protein from Human)
40s ribosomal protein s25 (13 kDa, Protein from Human)
60s ribosomal protein l35a (12 kDa, Protein from Human)
60s ribosomal protein l19 (23 kDa, Protein from Human)
60s ribosomal protein l3 (46 kDa, Protein from Human)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
60s ribosomal protein l27 (15 kDa, Protein from Human)
40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
40s ribosomal protein s6 (28 kDa, Protein from Human)
40s ribosomal protein s20 (13 kDa, Protein from Human)

[Show more]

EMD-9702

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Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Release date: May 29, 2019
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6ip6
Q-score: 0.184

Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T

Mol Cell (2019) 74 pp. 1205-1214.e8 [ Pubmed: 31080011 DOI: doi:10.1016/j.molcel.2019.04.022 ]

Sample:

40s ribosomal protein s5 (22 kDa, Protein from Human)
60s ribosomal protein l41 (3 kDa, Protein from Human)
40s ribosomal protein s8 (24 kDa, Protein from Human)
60s ribosomal protein l7a (30 kDa, Protein from Human)
60s ribosomal protein l11 (20 kDa, Protein from Human)
60s ribosomal protein l18 (21 kDa, Protein from Human)
40s ribosomal protein s13 (17 kDa, Protein from Human)
60s ribosomal protein l35 (14 kDa, Protein from Human)
28s ribosomal rna (1 MDa, RNA from Human)
60s ribosomal protein l39 (6 kDa, Protein from Human)
40s ribosomal protein s19 (16 kDa, Protein from Human)
60s ribosomal protein l23 (14 kDa, Protein from Human)
40s ribosomal protein s28 (7 kDa, Protein from Human)
40s ribosomal protein s15 (17 kDa, Protein from Human)
5s ribosomal rna (38 kDa, RNA from Human)
40s ribosomal protein s17 (15 kDa, Protein from Human)
60s ribosomal protein l36a (12 kDa, Protein from Human)
Hcv-ires rna (93 kDa, RNA from Human)
60s ribosomal protein l31 (14 kDa, Protein from Human)
40s ribosomal protein sa (32 kDa, Protein from Human)
60s ribosomal protein l10-like (24 kDa, Protein from Human)
60s ribosomal protein l36 (12 kDa, Protein from Human)
40s ribosomal protein s24 (15 kDa, Protein from Human)
40s ribosomal protein s21 (9 kDa, Protein from Human)
60s ribosomal protein l29 (17 kDa, Protein from Human)
40s ribosomal protein s27 (9 kDa, Protein from Human)
60s ribosomal protein l23a (17 kDa, Protein from Human)
40s ribosomal protein s3a (30 kDa, Protein from Human)
60s ribosomal protein l5 (34 kDa, Protein from Human)
60s ribosomal protein l18a (20 kDa, Protein from Human)
60s ribosomal protein l26 (17 kDa, Protein from Human)
60s ribosomal protein l14 (23 kDa, Protein from Human)
60s ribosomal protein l27a (16 kDa, Protein from Human)
60s ribosomal protein l21 (18 kDa, Protein from Human)
40s ribosomal protein s9 (22 kDa, Protein from Human)
5.8s ribosomal rna (50 kDa, RNA from Human)
Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
40s ribosomal protein s30 (6 kDa, Protein from Human)
60s ribosomal protein l15 (24 kDa, Protein from Human)
40s ribosomal protein s10 (18 kDa, Protein from Human)
60s ribosomal protein l37 (11 kDa, Protein from Human)
60s ribosomal protein l8 (28 kDa, Protein from Human)
40s ribosomal protein s3 (26 kDa, Protein from Human)
60s ribosomal protein l4 (47 kDa, Protein from Human)
Nascent peptide (1 kDa, Protein from Human)
40s ribosomal protein s26 (13 kDa, Protein from Human)
60s ribosomal protein l34 (13 kDa, Protein from Human)
60s ribosomal protein l28 (15 kDa, Protein from Human)
60s ribosomal protein l17 (21 kDa, Protein from Human)
40s ribosomal protein s23 (15 kDa, Protein from Human)
40s ribosomal protein s18 (17 kDa, Protein from Human)
60s ribosomal protein l7 (29 kDa, Protein from Human)
60s ribosomal protein l22 (14 kDa, Protein from Human)
40s ribosomal protein s16 (16 kDa, Protein from Human)
60s ribosomal protein l13 (24 kDa, Protein from Human)
60s ribosomal protein l13a (23 kDa, Protein from Human)
40s ribosomal protein s15a (14 kDa, Protein from Human)
Mrna (1 kDa, RNA from Human)
40s ribosomal protein s12 (14 kDa, Protein from Human)
40s ribosomal protein s7 (22 kDa, Protein from Human)
60s ribosomal protein l6 (32 kDa, Protein from Human)
Human 80s ribosome (Complex from Homo sapiens)
18s ribosomal rna (602 kDa, RNA from Human)
60s ribosomal protein l24 (17 kDa, Protein from Human)
P-site trna (24 kDa, RNA from Human)
40s ribosomal protein s14 (16 kDa, Protein from Human)
40s ribosomal protein s11 (18 kDa, Protein from Human)
60s ribosomal protein l37a (10 kDa, Protein from Human)
60s ribosomal protein l30 (12 kDa, Protein from Human)
60s ribosomal protein l9 (21 kDa, Protein from Human)
60s ribosomal protein l38 (8 kDa, Protein from Human)
40s ribosomal protein s2 (31 kDa, Protein from Human)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
40s ribosomal protein s29 (6 kDa, Protein from Human)
60s ribosomal protein l32 (15 kDa, Protein from Human)
40s ribosomal protein s25 (13 kDa, Protein from Human)
60s ribosomal protein l35a (12 kDa, Protein from Human)
60s ribosomal protein l19 (23 kDa, Protein from Human)
60s ribosomal protein l3 (46 kDa, Protein from Human)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
60s ribosomal protein l27 (15 kDa, Protein from Human)
40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
40s ribosomal protein s6 (28 kDa, Protein from Human)
40s ribosomal protein s20 (13 kDa, Protein from Human)

[Show more]

EMD-9703

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Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Release date: May 29, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip8
Q-score: 0.397

Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T

Mol Cell (2019) 74 pp. 1205-1214.e8 [ Pubmed: 31080011 DOI: doi:10.1016/j.molcel.2019.04.022 ]

Sample:

Eukaryotic peptide chain release factor subunit 1 (48 kDa, Protein from Human)
40s ribosomal protein s5 (22 kDa, Protein from Human)
60s ribosomal protein l41 (3 kDa, Protein from Human)
40s ribosomal protein s8 (24 kDa, Protein from Human)
60s ribosomal protein l7a (30 kDa, Protein from Human)
60s ribosomal protein l11 (20 kDa, Protein from Human)
60s ribosomal protein l18 (21 kDa, Protein from Human)
40s ribosomal protein s13 (17 kDa, Protein from Human)
60s ribosomal protein l35 (14 kDa, Protein from Human)
28s ribosomal rna (1 MDa, RNA from Human)
60s ribosomal protein l39 (6 kDa, Protein from Human)
40s ribosomal protein s19 (16 kDa, Protein from Human)
60s ribosomal protein l23 (14 kDa, Protein from Human)
40s ribosomal protein s28 (7 kDa, Protein from Human)
40s ribosomal protein s15 (17 kDa, Protein from Human)
5s ribosomal rna (38 kDa, RNA from Human)
40s ribosomal protein s17 (15 kDa, Protein from Human)
60s ribosomal protein l36a (12 kDa, Protein from Human)
Hcv-ires rna (93 kDa, RNA from Human)
60s ribosomal protein l31 (14 kDa, Protein from Human)
40s ribosomal protein sa (32 kDa, Protein from Human)
60s ribosomal protein l10-like (24 kDa, Protein from Human)
60s ribosomal protein l36 (12 kDa, Protein from Human)
40s ribosomal protein s24 (15 kDa, Protein from Human)
40s ribosomal protein s21 (9 kDa, Protein from Human)
60s ribosomal protein l29 (17 kDa, Protein from Human)
40s ribosomal protein s27 (9 kDa, Protein from Human)
60s ribosomal protein l23a (17 kDa, Protein from Human)
40s ribosomal protein s3a (30 kDa, Protein from Human)
60s ribosomal protein l5 (34 kDa, Protein from Human)
60s ribosomal protein l18a (20 kDa, Protein from Human)
60s ribosomal protein l26 (17 kDa, Protein from Human)
60s ribosomal protein l14 (23 kDa, Protein from Human)
60s ribosomal protein l27a (16 kDa, Protein from Human)
60s ribosomal protein l21 (18 kDa, Protein from Human)
40s ribosomal protein s9 (22 kDa, Protein from Human)
5.8s ribosomal rna (50 kDa, RNA from Human)
Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
40s ribosomal protein s30 (6 kDa, Protein from Human)
60s ribosomal protein l15 (24 kDa, Protein from Human)
40s ribosomal protein s10 (18 kDa, Protein from Human)
60s ribosomal protein l37 (11 kDa, Protein from Human)
60s ribosomal protein l8 (28 kDa, Protein from Human)
40s ribosomal protein s3 (26 kDa, Protein from Human)
60s ribosomal protein l4 (47 kDa, Protein from Human)
Nascent peptide (1 kDa, Protein from Human)
40s ribosomal protein s26 (13 kDa, Protein from Human)
60s ribosomal protein l34 (13 kDa, Protein from Human)
60s ribosomal protein l28 (15 kDa, Protein from Human)
60s ribosomal protein l17 (21 kDa, Protein from Human)
40s ribosomal protein s23 (15 kDa, Protein from Human)
40s ribosomal protein s18 (17 kDa, Protein from Human)
60s ribosomal protein l7 (29 kDa, Protein from Human)
Mrna (3 kDa, RNA from Human)
60s ribosomal protein l22 (14 kDa, Protein from Human)
40s ribosomal protein s16 (16 kDa, Protein from Human)
60s ribosomal protein l13 (24 kDa, Protein from Human)
60s ribosomal protein l13a (23 kDa, Protein from Human)
40s ribosomal protein s15a (14 kDa, Protein from Human)
40s ribosomal protein s12 (14 kDa, Protein from Human)
40s ribosomal protein s7 (22 kDa, Protein from Human)
60s ribosomal protein l6 (32 kDa, Protein from Human)
Human 80s ribosome (Complex from Homo sapiens)
18s ribosomal rna (602 kDa, RNA from Human)
60s ribosomal protein l24 (17 kDa, Protein from Human)
P-site trna (24 kDa, RNA from Human)
40s ribosomal protein s14 (16 kDa, Protein from Human)
40s ribosomal protein s11 (18 kDa, Protein from Human)
60s ribosomal protein l37a (10 kDa, Protein from Human)
60s ribosomal protein l30 (12 kDa, Protein from Human)
60s ribosomal protein l9 (21 kDa, Protein from Human)
60s ribosomal protein l38 (8 kDa, Protein from Human)
40s ribosomal protein s2 (31 kDa, Protein from Human)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
40s ribosomal protein s29 (6 kDa, Protein from Human)
60s ribosomal protein l32 (15 kDa, Protein from Human)
40s ribosomal protein s25 (13 kDa, Protein from Human)
60s ribosomal protein l35a (12 kDa, Protein from Human)
60s ribosomal protein l19 (23 kDa, Protein from Human)
60s ribosomal protein l3 (46 kDa, Protein from Human)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Human)
60s ribosomal protein l27 (15 kDa, Protein from Human)
40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
40s ribosomal protein s6 (28 kDa, Protein from Human)
40s ribosomal protein s20 (13 kDa, Protein from Human)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: