Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
Bovine 20S proteasome, untreated
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8azk
Q-score: 0.518
Szenkier N, Arie M, Matzov D, Sertchook R, Carmeli R, Cascio P, Stanhill A, Shalev Benami M, Navon A
To Be Published
- Untreated 20s proteasome (700 kDa, Complex from Bos taurus)
- Proteasome subunit beta type-4 (24 kDa, Protein from Bos taurus)
- Proteasome subunit beta type-3 (22 kDa, Protein from Bos taurus)
- Proteasome subunit beta type-2 (22 kDa, Protein from Bos taurus)
- Proteasome subunit alpha type-5 (26 kDa, Protein from Bos taurus)
- Proteasome subunit alpha type-1 (29 kDa, Protein from Bos taurus)
- Proteasome subunit alpha type-7 (27 kDa, Protein from Bos taurus)
- Proteasome subunit alpha type-6 (27 kDa, Protein from Bos taurus)
- Proteasome subunit beta type-6 (21 kDa, Protein from Bos taurus)
- Proteasome subunit beta type-7 (25 kDa, Protein from Bos taurus)
- Proteasome subunit beta type-1 (23 kDa, Protein from Bos taurus)
- Proteasome subunit alpha type-4 (29 kDa, Protein from Bos taurus)
- Proteasome subunit alpha type-2 (25 kDa, Protein from Bos taurus)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Bos taurus)
- Proteasome subunit beta type-5 (22 kDa, Protein from Bos taurus)
Cryo-EM structure of the full-length human NF1 dimer
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8edm
Q-score: 0.349
Young LC, Goldstein de Salazar R, Han SW, Huang ZYS, Merk A, Drew M, Darling J, Wall V, Grisshammer R, Cheng A, Allison MR, Sale MJ, Nissley DV, Esposito D, Ognjenovic J, McCormick F
PNAS (2023) 120 pp. e2208960120-e2208960120 [ DOI: doi:10.1073/pnas.2208960120 Pubmed: 36689660 ]
- Isoform i of neurofibromin (317 kDa, Protein from Homo sapiens)
- Full-length human nf1 (320 kDa, Complex from Homo sapiens)
Cryo-EM structure of the full-length human NF1 dimer
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8edl
Q-score: 0.293
To Be Published
- Isoform i of neurofibromin (317 kDa, Protein from Homo sapiens)
- Full-length human nf1 (320 kDa, Complex from Homo sapiens)
Cryo-EM structure of the full-length human NF1 dimer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8edn
Q-score: 0.261
To Be Published
- Full-length human nf1_body4 (320 kDa, Complex from Homo sapiens)
- Isoform i of neurofibromin (317 kDa, Protein from Homo sapiens)
Cryo-EM structure of the full-length human NF1 dimer
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8edo
Q-score: 0.477
To Be Published
- Full-length human nf1 (320 MDa, Complex from Homo sapiens)
- Neurofibromin (142 kDa, Protein from Homo sapiens)
Cryo-EM structure of heme A synthase trimer from Aquifex aeolicus
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8aw5
Q-score: 0.555
To Be Published
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Heme o oxygenase (34 kDa, Protein from Aquifex aeolicus VF5)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Heme a synthase with cofactor heme b (Complex from Aquifex aeolicus VF5)
Cryo-EM structure of the full-length human NF1 dimer
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8e20
Q-score: 0.323
Young LC, Goldstein de Salazar R, Han SW, Huang ZYS, Merk A, Drew M, Darling J, Wall V, Grisshammer R, Cheng A, Allison MR, Sale MJ, Nissley DV, Esposito D, Ognjenovic J, McCormick F
PNAS (2023) 120 pp. e2208960120-e2208960120 [ DOI: doi:10.1073/pnas.2208960120 Pubmed: 36689660 ]
- Full-length human nf1 (320 MDa, Complex from Homo sapiens)
- Isoform i of neurofibromin (317 kDa, Protein from Homo sapiens)
A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 8hil
Q-score: 0.461
Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J
Science (2023) 379 pp. 1209-1213 [ DOI: doi:10.1126/science.adf8231 Pubmed: 36893216 ]
- Dna-directed rna polymerase subunit (13 kDa, Protein from wild cabbage)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from wild cabbage)
- Dna-dependent rna polymerase iv and v subunit 2 (132 kDa, Protein from Brassica oleracea)
- Rna_pol_l_2 domain-containing protein (13 kDa, Protein from wild cabbage)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from wild cabbage)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (26 kDa, Protein from wild cabbage)
- Dna-directed rna polymerase v largest subunit (222 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerase v (Complex from Brassica oleracea)
- Dna-directed rna polymerases ii, iv and v subunit 12 (5 kDa, Protein from wild cabbage)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (16 kDa, Protein from wild cabbage)
- Rpold domain-containing protein (35 kDa, Protein from wild cabbage)
- Zinc ion (65 Da, Ligand)
A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8him
Q-score: 0.543
Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J
Science (2023) 379 pp. 1209-1213 [ DOI: doi:10.1126/science.adf8231 Pubmed: 36893216 ]
- Rpold domain-containing protein (35 kDa, Protein from wild cabbage)
- Rna (5'-r(*up*ap*up*ap*up*gp*cp*ap*up*ap*ap*ap*gp*ap*cp*cp*ap*gp*gp*c)-3') (6 kDa, RNA from Brassica oleracea)
- Dna-directed rna polymerase subunit (13 kDa, Protein from wild cabbage)
- Rna_pol_l_2 domain-containing protein (13 kDa, Protein from wild cabbage)
- Dna-directed rna polymerase (Complex)
- Dna-directed rna polymerase iv and v subunit 2 (132 kDa, Protein from Brassica oleracea)
- Dna (34-mer) (10 kDa, DNA from Brassica oleracea)
- Dna-directed rna polymerase v largest subunit (222 kDa, Protein from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from wild cabbage)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (26 kDa, Protein from wild cabbage)
- Dna-directed rna polymerases ii, iv and v subunit 12 (5 kDa, Protein from wild cabbage)
- Dna (34-mer) (10 kDa, DNA from Brassica oleracea)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (16 kDa, Protein from wild cabbage)
- Dna-directed rna polymerase v elongation complex (Complex from Brassica oleracea)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from wild cabbage)
- Zinc ion (65 Da, Ligand)
- Dna-rna (Complex)
CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7yho
Q-score: 0.432
Du X, Yang Z, Xie G, Wang C, Zhang L, Yan K, Yang M, Li S, Zhu JK, Du J
Nat Plants (2023) 9 pp. 271-279 [ Pubmed: 36624257 DOI: doi:10.1038/s41477-022-01322-8 ]
- Tg mismatch dsdna (Complex from Arabidopsis thaliana)
- Ros1-tg mismatch dsdna complex (Complex)
- Sex-determining region y protein,dna glycosylase/ap lyase ros1 (86 kDa, Protein from Arabidopsis thaliana)
- Ros1 (Complex from Homo sapiens)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)