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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND citation_journal_name:"TO BE PUBLISHED" AND natural_source_ncbi_code:"83333"

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EMD-17346

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E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Release date: May 22, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8p16

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

Sample:

30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
Trna(fmet) (24 kDa, RNA from Escherichia coli)
Mrna (15 kDa, RNA from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
Spermidine (145 Da, Ligand)
Spermine (202 Da, Ligand)
5s rrna (38 kDa, RNA from Escherichia coli)
1,4-diaminobutane (88 Da, Ligand)
Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
16s rrna (499 kDa, RNA from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Potassium ion (39 Da, Ligand)
Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
Peptide chain release factor rf2 (41 kDa, Protein from Escherichia coli K-12)
Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
Ribosome release complex (2 MDa, Complex from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)

[Show more]

EMD-17347

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E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Release date: May 22, 2024
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8p17
Q-score: 0.545

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

Sample:

30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
Trna(fmet) (24 kDa, RNA from Escherichia coli)
Mrna (15 kDa, RNA from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
Spermidine (145 Da, Ligand)
Spermine (202 Da, Ligand)
5s rrna (38 kDa, RNA from Escherichia coli)
1,4-diaminobutane (88 Da, Ligand)
Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Potassium ion (39 Da, Ligand)
Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
16s rna (499 kDa, RNA from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
Peptide chain release factor rf2 (41 kDa, Protein from Escherichia coli K-12)
Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
Ribosome release complex (2 MDa, Complex from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)

[Show more]

EMD-17348

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E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Release date: May 22, 2024
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8p18

Pundir S, Larsson DSD, Selmer M, Sanyal S

To Be Published

Sample:

30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
Trna(fmet) (24 kDa, RNA from Escherichia coli)
Mrna (15 kDa, RNA from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
Spermidine (145 Da, Ligand)
Spermine (202 Da, Ligand)
5s rrna (38 kDa, RNA from Escherichia coli)
1,4-diaminobutane (88 Da, Ligand)
Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
16s rrna (499 kDa, RNA from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Potassium ion (39 Da, Ligand)
Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
Peptide chain release factor rf2 (41 kDa, Protein from Escherichia coli K-12)
Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
Ribosome release complex (2 MDa, Complex from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)

[Show more]

EMD-40079

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E. coli clamp loader with closed clamp

Release date: March 27, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8giy
Q-score: 0.185

Xu Z-Q, Oakley AJ, Dixon NE

To Be Published

Sample:

Beta sliding clamp (40 kDa, Protein from Escherichia coli K-12)
Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Dna polymerase iii subunit psi (15 kDa, Protein from Escherichia coli K-12)
E. coli clamp loader with closed clamp (331 kDa, Complex from Escherichia coli)
Dna polymerase iii subunit tau (47 kDa, Protein from Escherichia coli K-12)
Zinc ion (65 Da, Ligand)
Dna polymerase iii subunit delta (38 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
Dna polymerase iii subunit delta' (36 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-40080

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E. coli clamp loader with open clamp

Release date: March 27, 2024
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8giz
Q-score: 0.445

Xu Z-Q, Oakley AJ, Dixon NE

To Be Published

Sample:

Beta sliding clamp (40 kDa, Protein from Escherichia coli K-12)
Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Dna polymerase iii subunit psi (15 kDa, Protein from Escherichia coli K-12)
E. coli clamp loader with open clamp (331 kDa, Complex from Escherichia coli)
Dna polymerase iii subunit tau (47 kDa, Protein from Escherichia coli K-12)
Zinc ion (65 Da, Ligand)
Dna polymerase iii subunit delta (38 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
Dna polymerase iii subunit delta' (36 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-40081

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E. coli clamp loader with open clamp on primed template DNA (form 1)

Release date: March 27, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8gj0
Q-score: 0.469

Xu Z-Q, Oakley AJ, Dixon NE

To Be Published

Sample:

Beta sliding clamp (40 kDa, Protein from Escherichia coli K-12)
Template (20 kDa, DNA from Escherichia coli)
E. coli clamp loader with open clamp on primed template dna (419 kDa, Complex from Escherichia coli)
Dna polymerase iii subunit psi (15 kDa, Protein from Escherichia coli K-12)
Dna polymerase iii subunit tau (71 kDa, Protein from Escherichia coli K-12)
Primer (7 kDa, DNA from Escherichia coli)
Zinc ion (65 Da, Ligand)
Tetrafluoroaluminate ion (102 Da, Ligand)
Dna polymerase iii subunit delta (38 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Dna polymerase iii subunit delta' (36 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-40082

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E. coli clamp loader with open clamp on primed template DNA (form 2)

Release date: March 27, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8gj1
Q-score: 0.481

Xu Z-Q, Oakley AJ, Dixon NE

To Be Published

Sample:

Beta sliding clamp (40 kDa, Protein from Escherichia coli K-12)
Template (20 kDa, DNA from Escherichia coli)
E. coli clamp loader with open clamp on primed template dna (419 kDa, Complex from Escherichia coli)
Dna polymerase iii subunit psi (15 kDa, Protein from Escherichia coli K-12)
Dna polymerase iii subunit tau (71 kDa, Protein from Escherichia coli K-12)
Primer (7 kDa, DNA from Escherichia coli)
Zinc ion (65 Da, Ligand)
Tetrafluoroaluminate ion (102 Da, Ligand)
Dna polymerase iii subunit delta (38 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Dna polymerase iii subunit delta' (36 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-40083

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E. coli clamp loader with closed clamp on primed template DNA

Release date: March 27, 2024
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8gj2
Q-score: 0.573

Xu Z-Q, Oakley AJ, Dixon NE

To Be Published

Sample:

Beta sliding clamp (40 kDa, Protein from Escherichia coli K-12)
Template (10 kDa, DNA from Escherichia coli)
Dna polymerase iii subunit tau (71 kDa, Protein from Escherichia coli K-12)
Dna polymerase iii subunit psi (15 kDa, Protein from Escherichia coli K-12)
Primer (7 kDa, DNA from Escherichia coli)
Zinc ion (65 Da, Ligand)
Tetrafluoroaluminate ion (102 Da, Ligand)
E. coli clamp loader with closed clamp on primed template dna (419 kDa, Complex from Escherichia coli)
Dna polymerase iii subunit delta (38 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Dna polymerase iii subunit delta' (36 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-40084

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E. coli clamp loader on primed template DNA

Release date: March 27, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gj3
Q-score: 0.495

Xu Z-Q, Oakley AJ, Dixon NE

To Be Published

Sample:

Template (7 kDa, DNA from Escherichia coli)
E. coli clamp loader on primed template dna (333 kDa, Complex from Escherichia coli)
Dna polymerase iii subunit psi (15 kDa, Protein from Escherichia coli K-12)
Dna polymerase iii subunit tau (71 kDa, Protein from Escherichia coli K-12)
Zinc ion (65 Da, Ligand)
Primer (4 kDa, DNA from Escherichia coli)
Tetrafluoroaluminate ion (102 Da, Ligand)
Dna polymerase iii subunit delta (38 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Dna polymerase iii subunit delta' (36 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-34668

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Cell divisome sPG hydrolysis machinery FtsEX-EnvC

Release date: Nov. 8, 2023
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8hd0

Zhang Z, Dong H, Chen Y

To Be Published

Sample:

Cell division atp-binding protein ftse (24 kDa, Protein from Escherichia coli (strain K12))
Cell division protein ftsx (38 kDa, Protein from Escherichia coli (strain K12))
Adenosine-5'-triphosphate (507 Da, Ligand)
Bacterial divisom spg hydrolysis machinery ftsex-envc (126 kDa, Complex from Escherichia coli)
Murein hydrolase activator envc (46 kDa, Protein from Escherichia coli (strain K12))

[Show more]

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Showing 1 - 10 of 17. Page 1 of 2

Display: Statistics

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Select database:

EMDB [17]

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Select the script type:

Shell (Unix-based) Batch (Windows-based)

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