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Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 8r4b
Q-score: 0.447
Galicia C, Guaitoli G, Fislage M, Gloeckner CJ, Versees W
eLife (2024) 13 [ Pubmed: 38666771 DOI: doi:10.7554/eLife.94503 ]
- Nbroco1 (15 kDa, Protein from Lama glama)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Ctroco in the active gtp state bound to the two activating nanobodies nbroco1 and nbroco2 (150 kDa, Complex from Chlorobaculum tepidum)
- Rab family protein (124 kDa, Protein from Chlorobaculum tepidum)
- Nbroco2 (14 kDa, Protein from Lama glama)
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8r4c
Q-score: 0.54
Galicia C, Guaitoli G, Fislage M, Gloeckner CJ, Versees W
eLife (2024) 13 [ Pubmed: 38666771 DOI: doi:10.7554/eLife.94503 ]
- Nbroco2 (14 kDa, Protein from Lama glama)
- Ctroco in the active gtp state bound to the two activating nanobodies nbroco1 and nbroco2 (150 kDa, Complex from Chlorobaculum tepidum)
- Rab family protein (124 kDa, Protein from Chlorobaculum tepidum)
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 8r4d
Q-score: 0.47
Galicia C, Guaitoli G, Fislage M, Gloeckner CJ, Versees W
eLife (2024) 13 [ Pubmed: 38666771 DOI: doi:10.7554/eLife.94503 ]
- Ctroco in the active gtp state bound to the two activating nanobodies nbroco1 and nbroco2 (150 kDa, Complex from Chlorobaculum tepidum)
- Nbroco1 (15 kDa, Protein from Lama glama)
- Rab family protein (124 kDa, Protein from Chlorobaculum tepidum)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
Respiratory complex I from Escherichia coli - conformation 1
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7nyr
Q-score: 0.308
eLife (2021) 10 [ Pubmed: 34308841 DOI: doi:10.7554/eLife.68710 ]
- Nadh-quinone oxidoreductase subunit a (16 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit c/d (68 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit m (56 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit f (49 kDa, Protein from Escherichia coli B)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh-quinone oxidoreductase subunit k (10 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit g (100 kDa, Protein from Escherichia coli B)
- Iron/sulfur cluster (351 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Nadh-quinone oxidoreductase subunit l (66 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit n (52 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit h (36 kDa, Protein from Escherichia coli B)
- Respiratory complex i from escherichia coli - conformation 1 (550 kDa, Complex from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit e (18 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit j (19 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit b (25 kDa, Protein from Escherichia coli B)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh-quinone oxidoreductase subunit i (20 kDa, Protein from Escherichia coli B)
Respiratory complex I from Escherichia coli - conformation 2
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7nyu
Q-score: 0.22
eLife (2021) 10 [ Pubmed: 34308841 DOI: doi:10.7554/eLife.68710 ]
- Nadh-quinone oxidoreductase subunit a (16 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit c/d (68 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit m (56 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit f (49 kDa, Protein from Escherichia coli B)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh-quinone oxidoreductase subunit k (10 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit g (100 kDa, Protein from Escherichia coli B)
- Iron/sulfur cluster (351 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Respiratory complex i from escherichia coli - conformation 2 (550 kDa, Complex from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit l (66 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit n (52 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit h (36 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit e (18 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit j (19 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit b (25 kDa, Protein from Escherichia coli B)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh-quinone oxidoreductase subunit i (20 kDa, Protein from Escherichia coli B)
Respiratory complex I from Escherichia coli - conformation 3
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7nyv
Q-score: 0.237
eLife (2021) 10 [ Pubmed: 34308841 DOI: doi:10.7554/eLife.68710 ]
- Nadh-quinone oxidoreductase subunit a (16 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit c/d (68 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit m (56 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit f (49 kDa, Protein from Escherichia coli B)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh-quinone oxidoreductase subunit k (10 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit g (100 kDa, Protein from Escherichia coli B)
- Iron/sulfur cluster (351 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Nadh-quinone oxidoreductase subunit l (66 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit n (52 kDa, Protein from Escherichia coli B)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh-quinone oxidoreductase subunit h (36 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit e (18 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit j (19 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit b (25 kDa, Protein from Escherichia coli B)
- Respiratory complex i from escherichia coli - conformation 3 (550 kDa, Complex from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit i (20 kDa, Protein from Escherichia coli B)
Respiratory complex I from Escherichia coli - focused refinement of membrane arm
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7nyh
Q-score: 0.393
eLife (2021) 10 [ Pubmed: 34308841 DOI: doi:10.7554/eLife.68710 ]
- Nadh-quinone oxidoreductase subunit a (16 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit m (56 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit k (10 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit l (66 kDa, Protein from Escherichia coli B)
- Respiratory complex i from escherichia coli - focused refinement of membrane arm (260 kDa, Complex from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit n (52 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit h (36 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit j (19 kDa, Protein from Escherichia coli B)
Respiratory complex I from Escherichia coli - focused refinement of cytoplasmic arm
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 7nz1
Q-score: 0.686
eLife (2021) 10 [ Pubmed: 34308841 DOI: doi:10.7554/eLife.68710 ]
- Nadh-quinone oxidoreductase subunit c/d (68 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit f (49 kDa, Protein from Escherichia coli B)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh-quinone oxidoreductase subunit g (100 kDa, Protein from Escherichia coli B)
- Iron/sulfur cluster (351 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- Nadh-quinone oxidoreductase subunit e (18 kDa, Protein from Escherichia coli B)
- Nadh-quinone oxidoreductase subunit b (25 kDa, Protein from Escherichia coli B)
- Respiratory complex i from escherichia coli - focused refinement of cytoplasmic arm (280 kDa, Complex from Escherichia coli B)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh-quinone oxidoreductase subunit i (20 kDa, Protein from Escherichia coli B)