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F1 domain of FoF1-ATPase from Bacillus PS3,120 degrees,highATP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8hh5
Q-score: 0.546
Nakano A, Yokoyama K, Kishikawa J, Nakanishi A, Mitsuoka K
To Be Published
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,highATP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8hh6
Q-score: 0.551
Nakano A, Yokoyama K, Kishikawa J, Nakanishi A, Mitsuoka K
To Be Published
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
F1 domain of FoF1-ATPase from Bacillus PS3, 81 degrees, lowATP
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8hh7
Q-score: 0.617
Nakano A, Yokoyama K, Kishikawa J, Nakanishi A, Mitsuoka K
To Be Published
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd,lowATP
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8hh8
Q-score: 0.576
Nakano A, Yokoyama K, Kishikawa J, Nakanishi A, Mitsuoka K
To Be Published
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8gxu
Q-score: 0.582
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 1 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gxw
Q-score: 0.539
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- 2 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8gxx
Q-score: 0.506
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 3 nucleotide-bound v1eg of v/a-atpase from thermus thermophilus. (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gxy
Q-score: 0.56
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- 2 sulfate-bound v1eg of v/a-atpase from thermus thermophilus. (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gxz
Q-score: 0.488
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 1 sulfate and 1 atp bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
Nucleotide-depleted F1 domain of FoF1-ATPase from Bacillus PS3, state1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xkh
Q-score: 0.545
Nakano A, Kishikawa JI, Nakanishi A, Mitsuoka K, Yokoyama K
Pnas Nexus (2022) 1 pp. pgac116-pgac116 [ Pubmed: 36741449 DOI: doi:10.1093/pnasnexus/pgac116 ]
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
- Atp synthase epsilon chain (14 kDa, Protein from Bacillus sp. PS3)
- Hydrogenphosphate ion (95 Da, Ligand)