Electron Microscopy Data Bank

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND assembly_molecular_weight:{2000000 TO 5000000] AND author_orcid:"0000-0002-9527-210x"

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EMD-17367

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Ternary complex of translating ribosome, NAC and METAP1

Release date: July 19, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8p2k
Q-score: 0.483

Gamerdinger M, Jia M, Schloemer R, Rabl L, Jaskolowski M, Khakzar KM, Ulusoy Z, Wallisch A, Jomaa A, Hunaeus G, Scaiola A, Diederichs K, Ban N, Deuerling E

Science (2023) 380 pp. 1238-1243 [ DOI: doi:10.1126/science.adg3297 Pubmed: 37347872 ]

Sample:

Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
Transcription factor btf3 (14 kDa, Protein from Homo sapiens)
18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s2 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
Water (18 Da, Ligand)
60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l5 eukaryotic c-terminal domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
E-site trna (15 kDa, RNA from Oryctolagus cuniculus)
40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
Guanosine-5'-triphosphate (523 Da, Ligand)
Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
Any 5'-monophosphate nucleotide (214 Da, Ligand)
60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
Magnesium ion (24 Da, Ligand)
40s ribosomal protein s14 (16 kDa, Protein from Oryctolagus cuniculus)
Methionine aminopeptidase 1 (43 kDa, Protein from Homo sapiens)
Ternary complex of translating ribosome, nac and metap1 (Complex from Oryctolagus cuniculus)
Ribosome translating a cytosolic peptide (Complex from Homo sapiens)
Nascent polypeptide-associated complex subunit alpha (23 kDa, Protein from Homo sapiens)
60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
Unknown atom or ion (Ligand)
Acetylamino-acetic acid (117 Da, Ligand)
Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
Us9 (19 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s19 (16 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
P-site val-trna (24 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
El18 (21 kDa, Protein from Oryctolagus cuniculus)
Spermine (202 Da, Ligand)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l7a (30 kDa, Protein from Oryctolagus cuniculus)
Es26 (13 kDa, Protein from Oryctolagus cuniculus)
Spermidine (145 Da, Ligand)
Glucose-6-phosphate isomerase (7 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
Complex of nac and metap1 at the tennel exit of translating ribosome (Complex)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)

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EMD-16894

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55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Release date: June 14, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oin
Q-score: 0.384

Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N

Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]

Sample:

28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
Ul30m (18 kDa, Protein from Sus scrofa)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
Bl31m (15 kDa, Protein from Sus scrofa)
39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
Ml44 (37 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
Ul2m (33 kDa, Protein from Sus scrofa)
P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
Water (18 Da, Ligand)
Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
Mrpl34 (18 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
N-formylmethionine (177 Da, Ligand)
Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
55s mammalian mitochondrial ribosome with mtrf1 and p-site trna (2 MDa, Complex from Sus scrofa)
Death associated protein 3 (46 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s33 (16 kDa, Protein from Sus scrofa)
39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
E-site trna (894 Da, RNA from Sus scrofa)
Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
Cp phe-trna (23 kDa, RNA from Sus scrofa)
39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
Ul16m (28 kDa, Protein from Sus scrofa)
28s ribosomal protein s35, mitochondrial isoform 1 (41 kDa, Protein from Sus scrofa)
Guanosine-5'-diphosphate (443 Da, Ligand)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
Ict1 (43 kDa, Protein from Sus scrofa)
Ul24m (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
Ml64 (25 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
Mrna (2 kDa, RNA from Homo sapiens)
Ribosomal protein (10 kDa, Protein from Sus scrofa)
Us9m (45 kDa, Protein from Sus scrofa)
Mitoribosomal protein bs6m, mrps6 (14 kDa, Protein from Sus scrofa)
16s rrna (504 kDa, RNA from Sus scrofa)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Sus scrofa)
Ul22m (24 kDa, Protein from Sus scrofa)
Ms23 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
Ms39 (78 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
Ml42 (16 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l43, mitochondrial isoform x2 (17 kDa, Protein from Sus scrofa)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
Bl17m (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
Spermine (202 Da, Ligand)
Phenylalanine (165 Da, Ligand)
Zinc ion (65 Da, Ligand)
Spermidine (145 Da, Ligand)
Adenosine-5'-triphosphate (507 Da, Ligand)
39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
Ml54 (15 kDa, Protein from Sus scrofa)
Bl33m (7 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
12s rrna (308 kDa, RNA from Sus scrofa)
Us17m (14 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s34 (55 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)

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EMD-16896

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39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Release date: June 14, 2023
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8oiq
Q-score: 0.44

Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N

Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]

Sample:

Ul22m (24 kDa, Protein from Sus scrofa)
39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
Bl17m (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
Ul30m (18 kDa, Protein from Sus scrofa)
E-site trna (894 Da, RNA from Sus scrofa)
Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
Cp phe-trna (23 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
Bl31m (15 kDa, Protein from Sus scrofa)
39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
Ml42 (16 kDa, Protein from Sus scrofa)
Ul16m (28 kDa, Protein from Sus scrofa)
Ml44 (37 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
Phenylalanine (165 Da, Ligand)
Potassium ion (39 Da, Ligand)
Zinc ion (65 Da, Ligand)
P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
Ict1 (43 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
39s mammalian mitochondrial ribosome with mtrf1 and p-site trnamet (1 MDa, Complex from Sus scrofa)
Ul24m (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Sus scrofa)
39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
Ml64 (25 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l43, mitochondrial isoform x2 (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Ribosomal protein (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
Ml54 (15 kDa, Protein from Sus scrofa)
Bl33m (7 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
16s rrna (504 kDa, RNA from Sus scrofa)
N-formylmethionine (177 Da, Ligand)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)

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EMD-16897

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55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Release date: June 14, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8oir
Q-score: 0.434

Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N

Science (2023) 380 pp. 531-536 [ DOI: doi:10.1126/science.adf9890 Pubmed: 37141370 ]

Sample:

28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
Cp val-trna(val) (22 kDa, RNA from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
Methionine (149 Da, Ligand)
16s rrna (500 kDa, RNA from Homo sapiens)
Peptide chain release factor 1, mitochondrial (56 kDa, Protein from Homo sapiens)
39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l1, mitochondrial (36 kDa, Protein from Homo sapiens)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
Potassium ion (39 Da, Ligand)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
Mrna (7 kDa, RNA from Homo sapiens)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
Valine (117 Da, Ligand)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
P-site met-trna(met) (22 kDa, RNA from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Fe-s-o hybrid cluster (335 Da, Ligand)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
55s human mitochondrial ribosome with mtrf1 and p-site trna (50 kDa, Complex from Homo sapiens)
12s rrna (306 kDa, RNA from Homo sapiens)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
E-site trna (894 Da, RNA from Homo sapiens)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
Adenosine-5'-triphosphate (507 Da, Ligand)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)

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EMD-11631

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Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-1 (120-mer)

Release date: June 2, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7a4f
Q-score: 0.446

Tetter S, Terasaka N, Steinauer A, Bingham RJ, Clark S, Scott AJP, Patel N, Leibundgut M, Wroblewski E, Ban N, Stockley PG, Twarock R, Hilvert D

Science (2021) 372 pp. 1220-1224 [ Pubmed: 34112695 DOI: doi:10.1126/science.abg2822 ]

Sample:

EMD-11632

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Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-1 (180-mer)

Release date: June 2, 2021
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7a4g
Q-score: 0.354

Tetter S, Terasaka N, Steinauer A, Bingham RJ, Clark S, Scott AJP, Patel N, Leibundgut M, Wroblewski E, Ban N, Stockley PG, Twarock R, Hilvert D

Science (2021) 372 pp. 1220-1224 [ Pubmed: 34112695 DOI: doi:10.1126/science.abg2822 ]

Sample:

EMD-11633

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Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-2 (180-mer)

Release date: June 2, 2021
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7a4h
Q-score: 0.29

Tetter S, Terasaka N, Steinauer A, Bingham RJ, Clark S, Scott AJP, Patel N, Leibundgut M, Wroblewski E, Ban N, Stockley PG, Twarock R, Hilvert D

Science (2021) 372 pp. 1220-1224 [ Pubmed: 34112695 DOI: doi:10.1126/science.abg2822 ]

Sample:

EMD-12756

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Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Release date: June 2, 2021
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7o7y
Q-score: 0.624

Bhatt PR, Scaiola A, Loughran G, Leibundgut M, Kratzel A, Meurs R, Dreos R, O'Connor KM, McMillan A, Bode JW, Thiel V, Gatfield D, Atkins JF, Ban N

Science (2021) 372 pp. 1306-1313 [ Pubmed: 34029205 DOI: doi:10.1126/science.abf3546 ]

Sample:

Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
El32 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
Water (18 Da, Ligand)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
El39 (6 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
El31 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
El43 (10 kDa, Protein from Oryctolagus cuniculus)
Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled close to the mutated sars-cov-2 slippery site by a pseudoknot (Complex)
E-site trna (15 kDa, RNA from Bos taurus)
El38 (8 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
P-site phe-trna(phe) (24 kDa, RNA from Bos taurus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
Us14 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
Es10 (18 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
Sars-cov-2 slippery site by a pseudoknot (Complex from Severe acute respiratory syndrome coronavirus 2)
Magnesium ion (24 Da, Ligand)
Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
Mrna containing sars-cov-2 sequence (69 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
Unknown atom or ion (Ligand)
Replicase polyprotein 1ab (121 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
Replicase polyprotein 1ab (Complex from Severe acute respiratory syndrome coronavirus 2)
Us9 (19 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled (Complex from Bos taurus)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
El30 (12 kDa, Protein from Oryctolagus cuniculus)
Spermine (202 Da, Ligand)
Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
Rabbit 80s ribosome stalled (Complex from Oryctolagus cuniculus)
Spermidine (145 Da, Ligand)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
El21 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
El24 (17 kDa, Protein from Oryctolagus cuniculus)
El33 (12 kDa, Protein from Oryctolagus cuniculus)
Us15 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)

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EMD-12757

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Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Release date: June 2, 2021
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7o7z
Q-score: 0.576

Bhatt PR, Scaiola A, Loughran G, Leibundgut M, Kratzel A, Meurs R, Dreos R, O'Connor KM, McMillan A, Bode JW, Thiel V, Gatfield D, Atkins JF, Ban N

Science (2021) 372 pp. 1306-1313 [ Pubmed: 34029205 DOI: doi:10.1126/science.abf3546 ]

Sample:

Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
El32 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
Water (18 Da, Ligand)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
El39 (6 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
El31 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
5s (38 kDa, RNA from Oryctolagus cuniculus)
El43 (10 kDa, Protein from Oryctolagus cuniculus)
Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled close to the mutated sars-cov-2 slippery site by a pseudoknot (Complex)
E-site trna (15 kDa, RNA from Bos taurus)
El38 (8 kDa, Protein from Oryctolagus cuniculus)
18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
P-site phe-trna(phe) (24 kDa, RNA from Bos taurus)
40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
Us14 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
Es10 (18 kDa, Protein from Oryctolagus cuniculus)
Sars-cov-2 slippery site by a pseudoknot (Complex from Severe acute respiratory syndrome coronavirus 2)
Magnesium ion (24 Da, Ligand)
Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
Unknown atom or ion (Ligand)
Replicase polyprotein 1ab (121 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
Replicase polyprotein 1ab (Complex from Severe acute respiratory syndrome coronavirus 2)
Us9 (19 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome stalled (Complex from Bos taurus)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
El30 (12 kDa, Protein from Oryctolagus cuniculus)
Spermine (202 Da, Ligand)
Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
Mrna containing sars-cov-2 sequence (70 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
Rabbit 80s ribosome stalled (Complex from Oryctolagus cuniculus)
Spermidine (145 Da, Ligand)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
El21 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
El24 (17 kDa, Protein from Oryctolagus cuniculus)
El33 (12 kDa, Protein from Oryctolagus cuniculus)
Us15 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)

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EMD-12758

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Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Release date: June 2, 2021
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7o80
Q-score: 0.497

Bhatt PR, Scaiola A, Loughran G, Leibundgut M, Kratzel A, Meurs R, Dreos R, O'Connor KM, McMillan A, Bode JW, Thiel V, Gatfield D, Atkins JF, Ban N

Science (2021) 372 pp. 1306-1313 [ Pubmed: 34029205 DOI: doi:10.1126/science.abf3546 ]

Sample:

Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
El32 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Sars-cov-2 slippery site (Complex from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
Eukaryotic peptide chain release factor subunit 1 (Complex from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80s ribosome (Complex from Bos taurus)
60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
Water (18 Da, Ligand)
Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
El42 (12 kDa, Protein from Oryctolagus cuniculus)
Iron/sulfur cluster (351 Da, Ligand)
El39 (6 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
El31 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
El43 (10 kDa, Protein from Oryctolagus cuniculus)
Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
E-site trna (15 kDa, RNA from Bos taurus)
El38 (8 kDa, Protein from Oryctolagus cuniculus)
18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
P-site leu-trna(leu) (27 kDa, RNA from Bos taurus)
40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
Us14 (6 kDa, Protein from Oryctolagus cuniculus)
Guanosine-5'-triphosphate (523 Da, Ligand)
Rabbit 80s ribosome (Complex from Oryctolagus cuniculus)
40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
Magnesium ion (24 Da, Ligand)
Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
Eukaryotic peptide chain release factor subunit 1 (49 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
Mrna containing sars-cov-2 sequence (69 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
Ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
Unknown atom or ion (Ligand)
Replicase polyprotein 1ab (121 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
Replicase polyprotein 1ab (Complex from Severe acute respiratory syndrome coronavirus 2)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
Atp binding cassette subfamily e member 1 (67 kDa, Protein from Oryctolagus cuniculus)
El30 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s7 (22 kDa, Protein from Oryctolagus cuniculus)
Spermidine (145 Da, Ligand)
Rabbit 80s ribosome in complex with erf1 and abce1 stalled at the stop codon in the mutated sars-cov-2 slippery site (Complex)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
El21 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
El24 (17 kDa, Protein from Oryctolagus cuniculus)
El33 (12 kDa, Protein from Oryctolagus cuniculus)
Us15 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)

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