Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP2
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8t3k
Q-score: 0.418
Tang Q, Sinclair M, Hasdemir HS, Stein RA, Karakas E, Tajkhorshid E, Mchaourab HS
Nat Commun (2023) 14 pp. 7184-7184 [ Pubmed: 37938578 DOI: doi:10.1038/s41467-023-42937-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yheh (77 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Probable multidrug resistance abc transporter atp-binding/permease protein yhei (67 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Heterodimeric bmrcd with ligands atp and lipids (Complex from Bacillus subtilis subsp. subtilis str. 168)
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8fpf
Q-score: 0.459
Nat Commun (2023) 14 pp. 7184-7184 [ Pubmed: 37938578 DOI: doi:10.1038/s41467-023-42937-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yheh (77 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Probable multidrug resistance abc transporter atp-binding/permease protein yhei (67 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Heterodimeric bmrcd with atp in lipid bilayers (Complex from Bacillus subtilis subsp. subtilis str. 168)
Heterodimeric ABC transporter BmrCD in the occluded conformation bound to ATP: BmrCD_OC-ATP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8fhk
Q-score: 0.454
Tang Q, Sinclair M, Hasdemir HS, Stein RA, Karakas E, Tajkhorshid E, Mchaourab HS
Nat Commun (2023) 14 pp. 7184-7184 [ Pubmed: 37938578 DOI: doi:10.1038/s41467-023-42937-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yheh (77 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Magnesium ion (24 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yhei (67 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Heterodimeric bmrcd with ligands atp and lipids (Complex from Bacillus subtilis subsp. subtilis str. 168)
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 8fmv
Q-score: 0.489
Tang Q, Sinclair M, Hasdemir HS, Stein RA, Karakas E, Tajkhorshid E, Mchaourab HS
Nat Commun (2023) 14 pp. 7184-7184 [ Pubmed: 37938578 DOI: doi:10.1038/s41467-023-42937-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yheh (77 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Heterodimeric bmrcd with ht1, atp, mg2+ and lipids (Complex from Bacillus subtilis subsp. subtilis str. 168)
- Magnesium ion (24 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yhei (67 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- 2'-(4-ethoxyphenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bi-benzimidazole (452 Da, Ligand)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8szc
Q-score: 0.494
Tang Q, Sinclair M, Hasdemir HS, Stein RA, Karakas E, Tajkhorshid E, Mchaourab HS
Nat Commun (2023) 14 pp. 7184-7184 [ Pubmed: 37938578 DOI: doi:10.1038/s41467-023-42937-5 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yheh (77 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 2'-(4-ethoxyphenyl)-5-(4-methyl-1-piperazinyl)-2,5'-bi-benzimidazole (452 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yhei (67 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Heterodimeric bmrcd with ligands atp and lipids (Complex from Bacillus subtilis subsp. subtilis str. 168)
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8t1p
Q-score: 0.526
Tang Q, Sinclair M, Hasdemir HS, Stein RA, Karakas E, Tajkhorshid E, Mchaourab HS
Nat Commun (2023) 14 pp. 7184-7184 [ Pubmed: 37938578 DOI: doi:10.1038/s41467-023-42937-5 ]
- Adp orthovanadate (544 Da, Ligand)
- Heterodimeric bmrcd with ligands atp/aov and lipids (Complex from Bacillus subtilis subsp. subtilis str. 168)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yheh (77 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Magnesium ion (24 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Probable multidrug resistance abc transporter atp-binding/permease protein yhei (67 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
Cryo-EM structure of the DnaD-NTD tetramer
Resolution: 5.47 Å
EM Method: Single-particle
Fitted PDBs: 8ojj
Q-score: 0.149
Winterhalter C, Pelliciari S, Stevens D, Fenyk S, Marchand E, Cronin NB, Soultanas P, Costa TRD, Ilangovan A, Murray H
Nucleic Acids Res (2023) 51 pp. 4322-4340 [ Pubmed: 37093985 DOI: doi:10.1093/nar/gkad277 ]
Structure of the SecA/SecYE/proOmpA(4Y)-sfGFP complex with ADP.BeF3-.
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7xha
Q-score: 0.46
Dong L, Yang S, Chen J, Wu X, Sun D, Song C, Li L
PNAS (2023) 120 pp. e2208070120-e2208070120 [ Pubmed: 36598944 DOI: doi:10.1073/pnas.2208070120 ]
- Sece (Complex from Escherichia coli)
- Seca (Complex from Geobacillus thermodenitrificans NG80-2)
- Protein translocase subunit secy (47 kDa, Protein from Geobacillus thermodenitrificans NG80-2)
- Complex of the seca/secye/proompa(4y)-sfgfp with adp.bef3- (180 kDa, Complex from Bacillus subtilis subsp. subtilis str. 168)
- Sfgfp (Complex)
- Beryllium trifluoride ion (66 Da, Ligand)
- Protein translocase subunit seca (88 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Translocating polypeptide (33 kDa, Protein from Escherichia coli)
- Secy (Complex from Geobacillus thermodenitrificans NG80-2)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Protein translocase subunit sece (7 kDa, Protein from Geobacillus thermodenitrificans NG80-2)
Structure of the SecA/SecYE/proOmpA(4Y)-sfGFP complex with ADP
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7xhb
Q-score: 0.429
Dong L, Yang S, Chen J, Wu X, Sun D, Song C, Li L
PNAS (2023) 120 pp. e2208070120-e2208070120 [ Pubmed: 36598944 DOI: doi:10.1073/pnas.2208070120 ]
- Translocating peptide (37 kDa, Protein from Escherichia coli)
- Sece (Complex from Escherichia coli)
- Seca (Complex from Geobacillus thermodenitrificans NG80-2)
- Complex of the seca/secye/proompa(4y)-sfgfp with adp. (180 kDa, Complex from Bacillus subtilis subsp. subtilis str. 168)
- Protein translocase subunit secy (47 kDa, Protein from Geobacillus thermodenitrificans NG80-2)
- Sfgfp (Complex)
- Protein translocase subunit seca (88 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Secy (Complex from Geobacillus thermodenitrificans NG80-2)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Protein translocase subunit sece (7 kDa, Protein from Geobacillus thermodenitrificans NG80-2)
Cryo-EM structure of PEIP-Bs_enolase complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xml
Q-score: 0.468
Zhang K, Li S, Wang Y, Wang Z, Mulvenna N, Yang H, Zhang P, Chen H, Li Y, Wang H, Gao Y, Wigneshweraraj S, Matthews S, Zhang K, Liu B
Cell Rep (2022) 40 pp. 111026-111026 [ Pubmed: 35793626 DOI: doi:10.1016/j.celrep.2022.111026 ]
- Peip (Complex from Bacillus phage SP01)
- Peip-bs_enolase complex (100 kDa, Complex)
- Bs_enolase (Complex from Bacillus subtilis (strain 168))
- Putative gene 60 protein (8 kDa, Protein from Bacillus phage SP01)
- Magnesium ion (24 Da, Ligand)
- Enolase (46 kDa, Protein from Bacillus subtilis (strain 168))