To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Single chain fragment scfv41n (27 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Scfv76-77 single chain fragment (Complex from Homo sapiens)
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (135 kDa, Protein from Enterobacteria phage T4)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Scfv76 single chain fragment (Complex from Homo sapiens)
- Single chain fragment scfv76 (28 kDa, Protein from Homo sapiens)
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (135 kDa, Protein from Enterobacteria phage T4)
- Sars-cov-2 (b.1.1.529/omicron variant) spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Scfv76-77 single chain fragment (28 kDa, Protein from Homo sapiens)
- Scfv76-77 single chain fragment (Complex from Homo sapiens)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76-77 (510 kDa, Complex)
SARS-CoV-2 S protein bound to human neutralising antibody UZGENT_G5
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8qpr
Q-score: 0.469
Acar DD, Witkowski W, Wejda M, Wei R, Desmet T, Schepens B, De Cae S, Sedeyn K, Eeckhaut H, Fijalkowska D, Roose K, Vanmarcke S, Poupon A, Jochmans D, Zhang X, Abdelnabi R, Foo CS, Weynand B, Reiter D, Callewaert N, Remaut H, Neyts J, Saelens X, Gerlo S, Vandekerckhove L
Ebiomedicine (2024) 100 pp. 104960-104960 [ DOI: doi:10.1016/j.ebiom.2023.104960 Pubmed: 38232633 ]
- Fab fragment of neutralising human antibody uzgent_g5 (Complex from Homo sapiens)
- Sars-cov2 s protein with fibritin (trimerization) tag (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of sars-cov2 s protein (wuhan) and fab fragment of neutralising human antibody uzgent_g5 (Complex)
- Igg heavy chain - fab (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin (142 kDa, Protein from Tequatrovirus T4)
- Igg light chain - fab (22 kDa, Protein from Homo sapiens)
SARS-CoV-2 S protein bound to neutralising antibody UZGENT_A3
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8qq0
Q-score: 0.534
Acar DD, Witkowski W, Wejda M, Wei R, Desmet T, Schepens B, De Cae S, Sedeyn K, Eeckhaut H, Fijalkowska D, Roose K, Vanmarcke S, Poupon A, Jochmans D, Zhang X, Abdelnabi R, Foo CS, Weynand B, Reiter D, Callewaert N, Remaut H, Neyts J, Saelens X, Gerlo S, Vandekerckhove L
Ebiomedicine (2024) 100 pp. 104960-104960 [ DOI: doi:10.1016/j.ebiom.2023.104960 Pubmed: 38232633 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Igg light chain - fab (22 kDa, Protein from Homo sapiens)
- Sars-cov2 s protein with fibritin (trimerization) tag (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab fragment of neutralising human antibody uzgent_a3 (Complex from Homo sapiens)
- Complex of sars-cov2 s protein (wuhan) and fab fragment of neutralising human antibody uzgent_a3 (Complex)
- Igg heavy chain - fab (24 kDa, Protein from Homo sapiens)
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8unh
Q-score: 0.445
Marcus K, Huang Y, Subramanian S, Gee CL, Gorday K, Ghaffari-Kashani S, Luo XR, Zheng L, O'Donnell M, Subramaniam S, Kuriyan J
Nat Struct Mol Biol (2024) 31 pp. 424-435 [ Pubmed: 38177685 DOI: doi:10.1038/s41594-023-01177-3 ]
- T4 bacteriophage sliding clamp (gp45) (Complex from Tequatrovirus T4)
- Sliding-clamp-loader large subunit (35 kDa, Protein from Tequatrovirus T4)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- T4 bacteriophage clamp loader (gp44 + gp62) (Complex from Tequatrovirus T4)
- T4 bacteriophage clamp loader with sliding clamp (Complex from Tequatrovirus T4)
- Sliding clamp (24 kDa, Protein from Tequatrovirus T4)
- Magnesium ion (24 Da, Ligand)
- Sliding-clamp-loader small subunit (21 kDa, Protein from Tequatrovirus T4)
X-31 Hemagglutinin Precursor HA0 at pH 7.5
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zj6
Q-score: 0.591
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 4.8
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 7zj7
Q-score: 0.352
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 7.5 after reneutralization
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7zj8
Q-score: 0.522
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
- Hemagglutinin,fibritin (62 kDa, Protein from Tequatrovirus T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Octyl beta-d-glucopyranoside (292 Da, Ligand)
- X-31 hemagglutinin precursor (ha0) (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7zr8
Q-score: 0.47
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omi-38 fab heavy chain (12 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- Omi-38 fab (Complex from Homo sapiens)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-38 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-38 fab light chain (11 kDa, Protein from Homo sapiens)