CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7yho
Q-score: 0.432
Du X, Yang Z, Xie G, Wang C, Zhang L, Yan K, Yang M, Li S, Zhu JK, Du J
Nat Plants (2023) 9 pp. 271-279 [ DOI: doi:10.1038/s41477-022-01322-8 Pubmed: 36624257 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Sex-determining region y protein,dna glycosylase/ap lyase ros1 (86 kDa, Protein from Arabidopsis thaliana)
- Ros1 (Complex from Homo sapiens)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
- Ros1-tg mismatch dsdna complex (Complex)
- Tg mismatch dsdna (Complex from Arabidopsis thaliana)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
CryoEM structure of Arabidopsis ROS1 in complex with 5mC-dsDNA at 3.1 Angstroms resolution
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7yhp
Q-score: 0.526
Du X, Yang Z, Xie G, Wang C, Zhang L, Yan K, Yang M, Li S, Zhu JK, Du J
Nat Plants (2023) 9 pp. 271-279 [ DOI: doi:10.1038/s41477-022-01322-8 Pubmed: 36624257 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Sex-determining region y protein,repressor of silencing 1,dna glycosylase/ap lyase ros1 (86 kDa, Protein from Arabidopsis thaliana)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
- Ros1 (Complex from Homo sapiens)
- Ros1-5mc dsdna complex (Complex)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
- 5mc dsdna (Complex from Arabidopsis thaliana)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7yhq
Q-score: 0.377
Du X, Yang Z, Xie G, Wang C, Zhang L, Yan K, Yang M, Li S, Zhu JK, Du J
Nat Plants (2023) 9 pp. 271-279 [ DOI: doi:10.1038/s41477-022-01322-8 Pubmed: 36624257 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Dsdna (Complex from Arabidopsis thaliana)
- Ros1 (Complex from Homo sapiens)
- Sex-determining region y protein,dna glycosylase/ap lyase ros1 (86 kDa, Protein from Arabidopsis thaliana)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
- Covalent-linked reaction intermediate of arabidopsis ros1 with dsdna (Complex)
- Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ksq
Q-score: 0.544
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psi-g (9 kDa, Protein from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Physcomitrium patens)
- Chlorophyll a (893 Da, Ligand)
- Psao (9 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psae (7 kDa, Protein from Physcomitrium patens)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- Psad (15 kDa, Protein from Physcomitrium patens)
- Psah (9 kDa, Protein from Physcomitrium patens)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 7ku5
Q-score: 0.387
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]
- Chlorophyll a (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- Psao (9 kDa, Protein from Physcomitrium patens)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7kux
Q-score: 0.546
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psi-g (9 kDa, Protein from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Physcomitrium patens)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psae (7 kDa, Protein from Physcomitrium patens)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- Psad (15 kDa, Protein from Physcomitrium patens)
- Psah (9 kDa, Protein from Physcomitrium patens)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)