EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND citation_journal_name:"NAT PLANTS" AND release_date:[2022-01-01T00:00:00Z TO 2022-12-31T23:59:59Z] AND author_name:"Yang Z"

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EMDB [3]

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EMD-33832

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CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution

Release date: Nov. 30, 2022
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7yho
Q-score: 0.432

Du X, Yang Z, Xie G, Wang C, Zhang L, Yan K, Yang M, Li S, Zhu JK, Du J

Nat Plants (2023) 9 pp. 271-279 [ DOI: doi:10.1038/s41477-022-01322-8 Pubmed: 36624257 ]

Sample:

Iron/sulfur cluster (351 Da, Ligand)
Sex-determining region y protein,dna glycosylase/ap lyase ros1 (86 kDa, Protein from Arabidopsis thaliana)
Ros1 (Complex from Homo sapiens)
Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
Ros1-tg mismatch dsdna complex (Complex)
Tg mismatch dsdna (Complex from Arabidopsis thaliana)
Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)

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EMD-33835

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CryoEM structure of Arabidopsis ROS1 in complex with 5mC-dsDNA at 3.1 Angstroms resolution

Release date: Nov. 30, 2022
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7yhp
Q-score: 0.526

Du X, Yang Z, Xie G, Wang C, Zhang L, Yan K, Yang M, Li S, Zhu JK, Du J

Nat Plants (2023) 9 pp. 271-279 [ DOI: doi:10.1038/s41477-022-01322-8 Pubmed: 36624257 ]

Sample:

Iron/sulfur cluster (351 Da, Ligand)
Sex-determining region y protein,repressor of silencing 1,dna glycosylase/ap lyase ros1 (86 kDa, Protein from Arabidopsis thaliana)
Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
Ros1 (Complex from Homo sapiens)
Ros1-5mc dsdna complex (Complex)
Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
5mc dsdna (Complex from Arabidopsis thaliana)

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EMD-33836

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CryoEM structure of Arabidopsis ROS1 in complex with a covalent-linked reaction intermediate at 3.9 Angstroms resolution

Release date: Nov. 30, 2022
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7yhq
Q-score: 0.377

Du X, Yang Z, Xie G, Wang C, Zhang L, Yan K, Yang M, Li S, Zhu JK, Du J

Nat Plants (2023) 9 pp. 271-279 [ DOI: doi:10.1038/s41477-022-01322-8 Pubmed: 36624257 ]

Sample:

Iron/sulfur cluster (351 Da, Ligand)
Dsdna (Complex from Arabidopsis thaliana)
Ros1 (Complex from Homo sapiens)
Sex-determining region y protein,dna glycosylase/ap lyase ros1 (86 kDa, Protein from Arabidopsis thaliana)
Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)
Covalent-linked reaction intermediate of arabidopsis ros1 with dsdna (Complex)
Dna (40-mer) (12 kDa, DNA from Arabidopsis thaliana)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

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