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The rice Na+/H+ antiporter SOS1 in an auto-inhibited state
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8iwo
Q-score: 0.495
The truncated rice Na+/H+ antiporter SOS1 (1-976) in a constitutively active state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8j2m
Q-score: 0.419
Cryo-EM structure of abscisic acid transporter AtABCG25 in inward conformation
Cryo-EM structure of abscisic acid transporter AtABCG25 with ABA
Cryo-EM structure of abscisic acid transporter AtABCG25 in outward conformation
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8i3a
Q-score: 0.579
Huang X, Zhang X, An N, Zhang M, Ma M, Yang Y, Jing L, Wang Y, Chen Z, Zhang P
Nat Plants (2023) 9 pp. 1709-1719 [ Pubmed: 37666961 DOI: doi:10.1038/s41477-023-01509-7 ]
- Arabidopsis thaliana abcg25 (Complex from Arabidopsis thaliana)
- Abc transporter g family member 25 (72 kDa, Protein from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Cryo-EM structure of abscisic acid transporter AtABCG25 in nanodisc
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8i3b
Q-score: 0.509
Huang X, Zhang X, An N, Zhang M, Ma M, Yang Y, Jing L, Wang Y, Chen Z, Zhang P
Nat Plants (2023) 9 pp. 1709-1719 [ Pubmed: 37666961 DOI: doi:10.1038/s41477-023-01509-7 ]
- Arabidopsis thaliana abcg25 (Complex from Arabidopsis thaliana)
- Abc transporter g family member 25 (72 kDa, Protein from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Cryo-EM structure of abscisic acid transporter AtABCG25 with CHS
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8i3c
Q-score: 0.572
Huang X, Zhang X, An N, Zhang M, Ma M, Yang Y, Jing L, Wang Y, Chen Z, Zhang P
Nat Plants (2023) 9 pp. 1709-1719 [ Pubmed: 37666961 DOI: doi:10.1038/s41477-023-01509-7 ]
- Arabidopsis thaliana abcg25 (Complex from Arabidopsis thaliana)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Abc transporter g family member 25 (72 kDa, Protein from Arabidopsis thaliana)
Resolution: 2.785 Å
EM Method: Single-particle
Fitted PDBs: 8c29
Q-score: 0.594
Opatikova M, Semchonok DA, Kopecny D, Ilik P, Pospisil P, Ilikova I, Roudnicky P, Zeljkovic SC, Tarkowski P, Kyrilis FL, Hamdi F, Kastritis PL, Kouril R
Nat Plants (2023) 9 pp. 1359-1369 [ DOI: doi:10.1038/s41477-023-01483-0 Pubmed: 37550369 ]
- Chlorophyll a (893 Da, Ligand)
- The c2s2-type psii-lhcii supercomplex (Complex from Picea abies)
- Psii 6.1 kda protein (15 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein h (7 kDa, Protein from Picea abies)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein m (3 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein l (4 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein k (6 kDa, Protein from Picea abies)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii core complex (c2) (Complex from Picea abies)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Picea abies)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem ii protein d1 (38 kDa, Protein from Picea abies)
- Photosystem ii psbx (12 kDa, Protein from Picea abies)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem ii light-harvesting complex (Complex from Picea abies)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- (2r)-2,5,7,8-tetramethyl-2-[(4r,8r)-4,8,12-trimethyltridecyl]chroman-6-ol (430 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Picea abies)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Picea abies)
- Pheophytin a (871 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Picea abies)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Picea abies)
- Beta-carotene (536 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein i (4 kDa, Protein from Picea abies)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Picea abies)
- Alpha-linolenic acid (278 Da, Ligand)
- Oxygen-evolving enhancer protein 1, chloroplastic (36 kDa, Protein from Picea abies)
- Palmitoleic acid (254 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Picea abies)
- Photosystem ii 5 kda protein, chloroplastic (14 kDa, Protein from Picea abies)
- Water (18 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Picea abies)
- Magnesium ion (24 Da, Ligand)
- Cytochrome b559 subunit beta (4 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein z (6 kDa, Protein from Picea abies)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8bq6
Q-score: 0.628
Klusch N, Dreimann M, Senkler J, Rugen N, Kuhlbrandt W, Braun HP
Nat Plants (2023) 9 pp. 142-156 [ Pubmed: 36585502 DOI: doi:10.1038/s41477-022-01308-6 ]
- Crotonyl coenzyme a (835 Da, Ligand)
- At4g16450 (11 kDa, Protein from thale cress)
- Gamma carbonic anhydrase-like 2, mitochondrial (27 kDa, Protein from thale cress)
- Cytochrome b-c1 complex subunit 7-2, mitochondrial (14 kDa, Protein from thale cress)
- Cytochrome b-c1 complex subunit 6-1, mitochondrial (7 kDa, Protein from thale cress)
- Nadh-ubiquinone oxidoreductase chain 4 (55 kDa, Protein from thale cress)
- Cytochrome b-c1 complex subunit 10, mitochondrial (5 kDa, Protein from thale cress)
- P1 (11 kDa, Protein from thale cress)
- Gamma carbonic anhydrase 2, mitochondrial (30 kDa, Protein from thale cress)
- Transmembrane protein (9 kDa, Protein from thale cress)
- Outer envelope pore protein 16-3, chloroplastic/mitochondrial (17 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-a (8 kDa, Protein from thale cress)
- Zinc ion (65 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (13 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-b (12 kDa, Protein from thale cress)
- Esss subunit of nadh:ubiquinone oxidoreductase (complex i) protein (12 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3 (22 kDa, Protein from thale cress)
- Cytochrome b-c1 complex subunit rieske-1, mitochondrial (29 kDa, Protein from thale cress)
- Cytochrome c1 2, heme protein, mitochondrial (33 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8-a, mitochondrial (25 kDa, Protein from thale cress)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (18 kDa, Protein from thale cress)
- Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial (54 kDa, Protein from thale cress)
- 2,3-dimethoxy-5-methyl-6-(3,11,15,19-tetramethyl-eicosa-2,6,10,14,18-pentaenyl)-[1,4]benzoquinone (522 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5-b (9 kDa, Protein from thale cress)
- Mitochondrial arabidopsis thaliana i+iii2 supercomplex (complete conformation 2 composition) (Complex from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (12 kDa, Protein from thale cress)
- Probable mitochondrial-processing peptidase subunit beta, mitochondrial (59 kDa, Protein from thale cress)
- Cytochrome b-c1 complex subunit 8-1, mitochondrial (8 kDa, Protein from thale cress)
- Uncharacterized protein at2g27730, mitochondrial (11 kDa, Protein from thale cress)
- Excitatory amino acid transporter (9 kDa, Protein from thale cress)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from thale cress)
- B15 -- 1 beta subcomplex subunit 4 (8 kDa, Protein from thale cress)
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Ubiquinone-7 (658 Da, Ligand)
- Nadh dehydrogenase subunit 4l (11 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from thale cress)
- Ubiquinone-9 (795 Da, Ligand)
- At2g46540/f11c10.23 (6 kDa, Protein from thale cress)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (17 kDa, Protein from thale cress)
- Cytochrome b-c1 complex subunit 9, mitochondrial (8 kDa, Protein from thale cress)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial (19 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 (7 kDa, Protein from thale cress)
- Cytochrome b (44 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2 (45 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (13 kDa, Protein from thale cress)
- Uncharacterized protein at1g67785 (7 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (81 kDa, Protein from thale cress)
- Acyl carrier protein 1, mitochondrial (13 kDa, Protein from thale cress)
- Acyl carrier protein 2, mitochondrial (14 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (43 kDa, Protein from thale cress)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-a (16 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (28 kDa, Protein from thale cress)
- Gamma carbonic anhydrase 1, mitochondrial (30 kDa, Protein from thale cress)
- Nadh-ubiquinone oxidoreductase chain 5 (74 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (15 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-b (11 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (53 kDa, Protein from thale cress)
- At3g07480.1 (17 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (11 kDa, Protein from thale cress)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 6 (23 kDa, Protein from thale cress)
- Nadh-ubiquinone oxidoreductase chain 2 (55 kDa, Protein from thale cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (24 kDa, Protein from thale cress)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (7 kDa, Protein from thale cress)