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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND citation_journal_name:"NAT PLANTS" AND electron_source:"FIELD EMISSION GUN" AND author_orcid:"0000-0002-1842-8633"

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EMD-30902

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PSII intermediate Psb28-RC47

Release date: June 30, 2021
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7dxa
Q-score: 0.568

Xiao Y, Huang G, You X, Zhu Q, Wang W, Kuang T, Han G, Sui SF, Shen JR

Nat Plants (2021) 7 pp. 1132-1142 [ Pubmed: 34226692 DOI: doi:10.1038/s41477-021-00961-7 ]

Sample:

Unknown ligand (35 Da, Ligand)
Fe (ii) ion (55 Da, Ligand)
Heptyl 1-thio-beta-d-glucopyranoside (294 Da, Ligand)
Photosystem ii reaction center psb28 protein (13 kDa, Protein from Thermosynechococcus vulcanus)
Cytochrome b559 subunit alpha (9 kDa, Protein from Thermosynechococcus vulcanus)
Chlorophyll a (893 Da, Ligand)
Photosystem ii reaction center protein m (4 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein l (4 kDa, Protein from Thermosynechococcus vulcanus)
Beta-carotene (536 Da, Ligand)
Photosystem ii reaction center protein t (3 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein x (4 kDa, Protein from Thermosynechococcus vulcanus)
Pheophytin a (871 Da, Ligand)
5-[(2e,6e,10e,14e,18e,22e)-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18,22,26-heptaenyl]-2,3-dimethylbenzo-1,4-quinone (612 Da, Ligand)
(1s)-2-(alpha-l-allopyranosyloxy)-1-[(tridecanoyloxy)methyl]ethyl palmitate (688 Da, Ligand)
Photosystem ii d2 protein (38 kDa, Protein from Thermosynechococcus vulcanus)
Cytochrome b559 subunit beta (5 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein i (4 kDa, Protein from Thermosynechococcus vulcanus)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Unidentified transmembrane protein (1 kDa, Protein from Thermosynechococcus vulcanus)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Chloride ion (35 Da, Ligand)
Psii intermediate psb28-rc47 complex (Complex from Thermosynechococcus vulcanus)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein h (7 kDa, Protein from Thermosynechococcus vulcanus)
Tsl0063 protein (5 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii protein d1 (39 kDa, Protein from Thermosynechococcus vulcanus)
Dodecyl-beta-d-maltoside (510 Da, Ligand)

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EMD-30909

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Cryo-EM structure of PSII intermediate Psb28-PSII complex

Release date: June 30, 2021
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7dxh
Q-score: 0.542

Xiao Y, Huang G, You X, Zhu Q, Wang W, Kuang T, Han G, Sui SF, Shen JR

Nat Plants (2021) 7 pp. 1132-1142 [ Pubmed: 34226692 DOI: doi:10.1038/s41477-021-00961-7 ]

Sample:

Fe (ii) ion (55 Da, Ligand)
Heptyl 1-thio-beta-d-glucopyranoside (294 Da, Ligand)
Unknown ligand (294 Da, Ligand)
Photosystem ii reaction center psb28 protein (13 kDa, Protein from Thermosynechococcus vulcanus)
Cytochrome b559 subunit alpha (9 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein z (6 kDa, Protein from Thermosynechococcus vulcanus)
Chlorophyll a (893 Da, Ligand)
Photosystem ii reaction center protein m (4 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein l (4 kDa, Protein from Thermosynechococcus vulcanus)
Cryo-em structure of psii intermediate psb28-psii complex. (Complex from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein t (3 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein x (4 kDa, Protein from Thermosynechococcus vulcanus)
Beta-carotene (536 Da, Ligand)
Photosystem ii cp43 reaction center protein (49 kDa, Protein from Thermosynechococcus vulcanus)
Pheophytin a (871 Da, Ligand)
5-[(2e,6e,10e,14e,18e,22e)-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18,22,26-heptaenyl]-2,3-dimethylbenzo-1,4-quinone (612 Da, Ligand)
Photosystem ii reaction center protein k (5 kDa, Protein from Thermosynechococcus vulcanus)
(1s)-2-(alpha-l-allopyranosyloxy)-1-[(tridecanoyloxy)methyl]ethyl palmitate (688 Da, Ligand)
Photosystem ii d2 protein (38 kDa, Protein from Thermosynechococcus vulcanus)
Cytochrome b559 subunit beta (5 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein i (4 kDa, Protein from Thermosynechococcus vulcanus)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Unidentified transmembrane protein (1 kDa, Protein from Thermosynechococcus vulcanus)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Chloride ion (35 Da, Ligand)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein h (7 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Thermosynechococcus vulcanus)
Tsl0063 protein (5 kDa, Protein from Thermosynechococcus vulcanus)
Photosystem ii protein d1 (39 kDa, Protein from Thermosynechococcus vulcanus)
Dodecyl-beta-d-maltoside (510 Da, Ligand)

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EMD-9670

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Structure of PSI-LHCI

Release date: Feb. 13, 2019
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6igz
Q-score: 0.475

Qin X, Pi X, Wang W, Han G, Zhu L, Liu M, Cheng L, Shen JR, Kuang T, Sui SF

Nat Plants (2019) 5 pp. 263-272 [ Pubmed: 30850820 DOI: doi:10.1038/s41477-019-0379-y ]

Sample:

Phylloquinone (450 Da, Ligand)
Psai (3 kDa, Protein from Bryopsis corticulans)
Lhca-b (26 kDa, Protein from Bryopsis corticulans)
Lhca-h (28 kDa, Protein from Bryopsis corticulans)
Chlorophyll a (893 Da, Ligand)
Psah (14 kDa, Protein from Bryopsis corticulans)
Chlorophyll b (907 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Psad (21 kDa, Protein from Bryopsis corticulans)
Psaa (83 kDa, Protein from Bryopsis corticulans)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
(6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
Lhca-d (30 kDa, Protein from Bryopsis corticulans)
Psae (10 kDa, Protein from Bryopsis corticulans)
Psag (18 kDa, Protein from Bryopsis corticulans)
Lhca-c (27 kDa, Protein from Bryopsis corticulans)
Lhca-i (24 kDa, Protein from Bryopsis corticulans)
Psab (82 kDa, Protein from Bryopsis corticulans)
Lhca-a (24 kDa, Protein from Bryopsis corticulans)
Psak (12 kDa, Protein from Bryopsis corticulans)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Psal (21 kDa, Protein from Bryopsis corticulans)
Psaf (25 kDa, Protein from Bryopsis corticulans)
Photosystem i reaction center subunit xii (3 kDa, Protein from Bryopsis corticulans)
Psac (8 kDa, Protein from Bryopsis corticulans)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Psi-lhci (Complex from Bryopsis corticulans)
Psaj (4 kDa, Protein from Bryopsis corticulans)
Lhca-j (26 kDa, Protein from Bryopsis corticulans)
Heptyl 1-thiohexopyranoside (294 Da, Ligand)
Lhca-g (29 kDa, Protein from Bryopsis corticulans)
Iron/sulfur cluster (351 Da, Ligand)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: