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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND citation_journal_name:"NAT PLANTS" AND electron_source:"FIELD EMISSION GUN" AND author_orcid:"0000-0002-0415-941x"

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EMD-9955

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Cryo-EM structure of the C2S2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii

Release date: Oct. 23, 2019
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6kac
Q-score: 0.569

Sheng X, Watanabe A, Li A, Kim E, Song C, Murata K, Song D, Minagawa J, Liu Z

Nat Plants (2019) 5 pp. 1320-1330 [ DOI: doi:10.1038/s41477-019-0543-4 Pubmed: 31768031 ]

Sample:

Oxygen-evolving enhancer protein 3, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
Predicted protein (19 kDa, Protein from Chlamydomonas reinhardtii)
Fe (ii) ion (55 Da, Ligand)
Photosystem ii protein d1 (39 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlamydomonas reinhardtii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Oxygen-evolving enhancer protein 2, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii d2 protein (39 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll b (907 Da, Ligand)
The c2s2-type psii-lhcii supercomplex (Complex from Chlamydomonas reinhardtii)
Unindentified stromal protein (usp) (2 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein k (5 kDa, Protein from Chlamydomonas reinhardtii)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Beta-carotene (536 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Cytochrome b559 subunit beta (4 kDa, Protein from Chlamydomonas reinhardtii)
Pheophytin a (871 Da, Ligand)
Photosystem ii reaction center protein h (9 kDa, Protein from Chlamydomonas reinhardtii)
Oxygen-evolving enhancer protein 1, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
10 kda photosystem ii polypeptide psbr (potential) (1 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein z (6 kDa, Protein from Chlamydomonas reinhardtii)
Water (18 Da, Ligand)
Photosystem ii reaction center w protein, chloroplastic (12 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein i (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein m (3 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chlamydomonas reinhardtii)
4.1 kda photosystem ii subunit (9 kDa, Protein from Chlamydomonas reinhardtii)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem ii reaction center protein l (4 kDa, Protein from Chlamydomonas reinhardtii)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Chloride ion (35 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem ii reaction center protein t (3 kDa, Protein from Chlamydomonas reinhardtii)
Ca-mn4-o5 cluster (339 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Cytochrome b559 subunit alpha (9 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein cp29 (29 kDa, Protein from Chlamydomonas reinhardtii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Bicarbonate ion (61 Da, Ligand)
Photosystem ii reaction center protein j (4 kDa, Protein from Chlamydomonas reinhardtii)

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EMD-9956

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Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii

Release date: Oct. 23, 2019
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6kad
Q-score: 0.447

Sheng X, Watanabe A, Li A, Kim E, Song C, Murata K, Song D, Minagawa J, Liu Z

Nat Plants (2019) 5 pp. 1320-1330 [ DOI: doi:10.1038/s41477-019-0543-4 Pubmed: 31768031 ]

Sample:

Fe (ii) ion (55 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Oxygen-evolving enhancer protein 1, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii protein d1 (39 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlamydomonas reinhardtii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
The c2s2m2l2-type psii-lhcii supercomplex (Complex from Chlamydomonas reinhardtii)
Chlorophyll a (893 Da, Ligand)
Photosystem ii d2 protein (39 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein i (4 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll b (907 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Cytochrome b559 subunit beta (4 kDa, Protein from Chlamydomonas reinhardtii)
Pheophytin a (871 Da, Ligand)
Photosystem ii reaction center protein h (9 kDa, Protein from Chlamydomonas reinhardtii)
Ca-mn4-o5 cluster (339 Da, Ligand)
Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein k (5 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein z (6 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center w protein, chloroplastic (12 kDa, Protein from Chlamydomonas reinhardtii)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem ii reaction center protein m (3 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chlamydomonas reinhardtii)
4.1 kda photosystem ii subunit (9 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein l (4 kDa, Protein from Chlamydomonas reinhardtii)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Chloride ion (35 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein t (3 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Cytochrome b559 subunit alpha (9 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein cp29 (29 kDa, Protein from Chlamydomonas reinhardtii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Bicarbonate ion (61 Da, Ligand)
Photosystem ii reaction center protein j (4 kDa, Protein from Chlamydomonas reinhardtii)

[Show more]

Sort by: Download

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Display: Statistics

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EMDB [2]

Format:

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Preview first 10

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