Electron Microscopy Data Bank

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Golden Shiner Reovirus Core Polar Vertex

Release date: March 22, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8fjk
Q-score: 0.467

Stevens A, Cui Y, Shivakoti S, Zhou ZH

Protein Cell (2023) 14 pp. 544-548 [ Pubmed: 36856784 DOI: doi:10.1093/procel/pwad002 ]

Sample:

Rna (40-mer) (12 kDa, RNA from Golden shiner reovirus)
Rna (30-mer) (9 kDa, RNA from Golden shiner reovirus)
Rna (52-mer) (16 kDa, RNA from Golden shiner reovirus)
Clamp protein vp6 (44 kDa, Protein from Golden shiner reovirus)
Outer capsid protein vp1 (141 kDa, Protein from Golden shiner reovirus)
Microtubule-associated protein vp5 (79 kDa, Protein from Golden shiner reovirus)
Zinc ion (65 Da, Ligand)
Golden shiner reovirus (47 MDa, Virus from Golden shiner reovirus)
Rna (38-mer) (12 kDa, RNA from Golden shiner reovirus)
Rna-directed rna polymerase vp2 (141 kDa, Protein from Golden shiner reovirus)
Major inner capsid protein vp3 (9 kDa, Protein from Golden shiner reovirus)
Rna (18-mer) (5 kDa, RNA from Golden shiner reovirus)
Major inner capsid protein vp3 (124 kDa, Protein from Golden shiner reovirus)
Rna (60-mer) (19 kDa, RNA from Golden shiner reovirus)

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EMD-29336

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Golden shiner reovirus tropical vertex missing TEC

Release date: March 15, 2023
Resolution: 3.7 Å
EM Method: Single-particle

Stevens A, Cui Y, Shivakoti S, Zhou ZH

Protein Cell (2023) 14 pp. 544-548 [ Pubmed: 36856784 DOI: doi:10.1093/procel/pwad002 ]

Sample:

Golden shiner reovirus (47 MDa, Virus from Golden shiner reovirus)

EMD-29337

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Golden shiner reovirus inner capsid particle

Release date: March 15, 2023
Resolution: 4.2 Å
EM Method: Single-particle

Stevens A, Cui Y, Shivakoti S, Zhou ZH

Protein Cell (2023) 14 pp. 544-548 [ Pubmed: 36856784 DOI: doi:10.1093/procel/pwad002 ]

Sample:

Golden shiner reovirus (47 MDa, Virus from Golden shiner reovirus)

EMD-29244

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Golden Shiner Reovirus Core Tropical Vertex

Release date: March 8, 2023
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8fjl
Q-score: 0.465

Stevens A, Cui Y, Shivakoti S, Zhou ZH

Protein Cell (2023) 14 pp. 544-548 [ Pubmed: 36856784 DOI: doi:10.1093/procel/pwad002 ]

Sample:

Rna (52-mer) (16 kDa, RNA from Golden shiner reovirus)
Clamp protein vp6 (44 kDa, Protein from Golden shiner reovirus)
Outer capsid protein vp1 (141 kDa, Protein from Golden shiner reovirus)
Microtubule-associated protein vp5 (79 kDa, Protein from Golden shiner reovirus)
Rna (30-mer) (12 kDa, RNA from Golden shiner reovirus)
Zinc ion (65 Da, Ligand)
Golden shiner reovirus (47 MDa, Virus from Golden shiner reovirus)
Rna-directed rna polymerase vp2 (141 kDa, Protein from Golden shiner reovirus)
Major inner capsid protein vp3 (9 kDa, Protein from Golden shiner reovirus)
Rna (39-mer) (12 kDa, RNA from Golden shiner reovirus)
Rna (38-mer) (8 kDa, RNA from Golden shiner reovirus)
Major inner capsid protein vp3 (124 kDa, Protein from Golden shiner reovirus)
Rna (60-mer) (19 kDa, RNA from Golden shiner reovirus)

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EMD-22705

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Cryo-EM reconstruction of mtTiME-FL (Rv3705c-FL) in Mycobacterium tuberculosis with D8 symmetry

Release date: Sept. 1, 2021
Resolution: 4.4 Å
EM Method: Single-particle

Cai X, Liu L, Qiu C, Wen C, He Y, Cui Y, Li S, Zhang X, Zhang L, Tian C, Bi L, Zhou ZH, Gong W

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abg5656 Pubmed: 34417177 ]

Sample:

Mttime-fl (rv3705c-fl) (Complex from Mycobacterium tuberculosis)

EMD-22706

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Cryo-EM reconstruction of mtTiME-FL (Rv3705c-FL) in Mycobacterium tuberculosis with C1 symmetry

Release date: Sept. 1, 2021
Resolution: 6.2 Å
EM Method: Single-particle

Cai X, Liu L, Qiu C, Wen C, He Y, Cui Y, Li S, Zhang X, Zhang L, Tian C, Bi L, Zhou ZH, Gong W

Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abg5656 Pubmed: 34417177 ]

Sample:

Mttime-fl (rv3705c-fl) (Complex from Mycobacterium tuberculosis)

EMD-21260

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icosahedral symmetry reconstruction of brome mosaic virus (RNA 3+4)

Release date: May 20, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6voc
Q-score: 0.417

Beren C, Cui Y, Chakravarty A, Yang X, Rao ALN, Knobler CM, Zhou ZH, Gelbart WM

PNAS (2020) 117 pp. 10673-10680 [ DOI: doi:10.1073/pnas.1915078117 Pubmed: 32358197 ]

Sample:

Capsid protein (20 kDa, Protein from Brome mosaic virus)
Brome mosaic virus (Virus from Brome mosaic virus)

EMD-21261

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Asymmetry reconstruction of Brome mosaic virus (RNA 3 and 4)

Release date: May 20, 2020
Resolution: 3.9 Å
EM Method: Single-particle

Beren C, Cui Y, Chakravarty A, Yang X, Rao ALN, Knobler CM, Zhou ZH, Gelbart WM

PNAS (2020) 117 pp. 10673-10680 [ DOI: doi:10.1073/pnas.1915078117 Pubmed: 32358197 ]

Sample:

Brome mosaic virus (Virus from Brome mosaic virus)

EMD-21279

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RNA-focused asymmetry reconstruction I

Release date: May 20, 2020
Resolution: 4.0 Å
EM Method: Single-particle

Beren C, Cui Y, Chakravarty A, Yang X, Rao ALN, Knobler CM, Zhou ZH, Gelbart WM

PNAS (2020) 117 pp. 10673-10680 [ DOI: doi:10.1073/pnas.1915078117 Pubmed: 32358197 ]

Sample:

Brome mosaic virus (Virus from Brome mosaic virus)

EMD-21280

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RNA-focused asymmetry reconstruction II

Release date: May 20, 2020
Resolution: 4.0 Å
EM Method: Single-particle

Beren C, Cui Y, Chakravarty A, Yang X, Rao ALN, Knobler CM, Zhou ZH, Gelbart WM

PNAS (2020) 117 pp. 10673-10680 [ DOI: doi:10.1073/pnas.1915078117 Pubmed: 32358197 ]

Sample:

Brome mosaic virus (Virus from Brome mosaic virus)

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