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PRD-0038 RBD bound to Rhinolophus alcyone ACE2 (local refinement)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8u0t
Q-score: 0.517
Lee J, Zepeda SK, Park YJ, Taylor AL, Quispe J, Stewart C, Leaf EM, Treichel C, Corti D, King NP, Starr TN, Veesler D
Cell Host Microbe (2023) 31 pp. 1961-1973.e11 [ Pubmed: 37989312 DOI: doi:10.1016/j.chom.2023.10.018 ]
- Prd-0038 rbd bound to r. alcyone ace2 (Complex from Sarbecovirus)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme (89 kDa, Protein from Rhinolophus alcyone)
- Prd-0038 (28 kDa, Protein from Sarbecovirus)
Prefusion structure of the PRD-0038 spike glycoprotein ectodomain trimer
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8u29
Q-score: 0.563
Lee J, Zepeda SK, Park YJ, Taylor AL, Quispe J, Stewart C, Leaf EM, Treichel C, Corti D, King NP, Starr TN, Veesler D
Cell Host Microbe (2023) 31 pp. 1961-1973.e11 [ Pubmed: 37989312 DOI: doi:10.1016/j.chom.2023.10.018 ]
- Prd-0038 spike glycoprotein (Complex from Sarbecovirus sp.)
- Prd-0038 spike glycoprotein (141 kDa, Protein from Sarbecovirus sp.)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
RSV F trimer bound to RSV-199 Fab
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8dzw
Q-score: 0.569
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ DOI: doi:10.1016/j.chom.2023.07.002 Pubmed: 37516111 ]
- Rsv-199 heavy chain protein (24 kDa, Protein from Homo sapiens)
- Rsv fusion protein (53 kDa, Protein from Human respiratory syncytial virus A2)
- Rsv fusion protein complex with rsv-199 fab (Complex from Human respiratory syncytial virus A2)
- Rsv-199 light chain protein (22 kDa, Protein from Homo sapiens)
HMPV F monomer bound to RSV-199 Fab
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8e2u
Q-score: 0.457
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ DOI: doi:10.1016/j.chom.2023.07.002 Pubmed: 37516111 ]
- Rsv-199 light chain (22 kDa, Protein from Homo sapiens)
- Rsv-199 heavy chain (24 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (47 kDa, Protein from Human metapneumovirus A)
- Mpv fusion protein complex with rsv-199 fab (Complex from Human metapneumovirus)
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8eay
Q-score: 0.403
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ DOI: doi:10.1016/j.chom.2023.07.002 Pubmed: 37516111 ]
- 4i3 heavy chain protein (13 kDa, Protein from Homo sapiens)
- Mpv fusion protein complex with 4i3 fab (Complex from Human metapneumovirus)
- 4i3 light chain protein (11 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (45 kDa, Protein from Human metapneumovirus A)
HMPV F dimer bound to RSV-199 Fab
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 8ebp
Q-score: 0.426
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ DOI: doi:10.1016/j.chom.2023.07.002 Pubmed: 37516111 ]
- Rsv-199 light chain protein (22 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (47 kDa, Protein from Human metapneumovirus A)
- Mpv fusion protein complex with rsv-199 fab (Complex from Human metapneumovirus)
- Rsv-199 heavy chain protein (24 kDa, Protein from Homo sapiens)
cryo-EM structure of BG505 SOSIP.664 HIV-1 Env trimer in complex with bNAbs EPTC112 and 3BNC117
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8c8t
Q-score: 0.511
Molinos-Albert LM, Baquero E, Bouvin-Pley M, Lorin V, Charre C, Planchais C, Dimitrov JD, Monceaux V, Vos M, Hocqueloux L, Berger JL, Seaman MS, Braibant M, Avettand-Fenoel V, Saez-Cirion A, Mouquet H
Cell Host Microbe (2023) 31 pp. 1275- [ Pubmed: 37433296 DOI: doi:10.1016/j.chom.2023.06.006 ]
- Envelope glycoprotein gp160 (52 kDa, Protein from Human immunodeficiency virus 1)
- Igg eptc112 fab fragment heavy chain (25 kDa, Protein from Homo sapiens)
- Igg 3bnc117 fab light chain (23 kDa, Protein from Homo sapiens)
- Igg 3bnc117 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Ternary complex of bg505 sosip.664 hiv-1 env with bnabs eptc112 and 3bnc117 (Complex from Homo sapiens)
- Gp41 bg505 t332n sosip.664 (16 kDa, Protein from Human immunodeficiency virus 1)
- Igg eptc112 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Subtomogram average of Immature Rotavirus TLP penton
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8co6
Q-score: 0.268
Shah PNM, Gilchrist JB, Forsberg BO, Burt A, Howe A, Mosalaganti S, Wan W, Radecke J, Chaban Y, Sutton G, Stuart DI, Boyce M
Cell Host Microbe (2023) 31 pp. 604-615.e4 [ Pubmed: 36996819 DOI: doi:10.1016/j.chom.2023.03.004 ]
- Rotavirus a (Virus from Rotavirus A)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus A)
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus A)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus A)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus A)