Electron Microscopy Data Bank

Download Map 3D View

PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)

Release date: Feb. 14, 2024
Resolution: 1.92 Å
EM Method: Single-particle
Fitted PDBs: 8wey
Q-score: 0.662

Kato K, Hamaguchi T, Kumazawa M, Nakajima Y, Ifuku K, Hirooka S, Hirose Y, Miyagishima SY, Suzuki T, Kawakami K, Dohmae N, Yonekura K, Shen JR, Nagao R

PNAS (2024) 121 pp. e2319658121-e2319658121 [ Pubmed: 38442179 DOI: doi:10.1073/pnas.2319658121 ]

Sample:

Photosystem i reaction center subunit x (7 kDa, Protein from Cyanidium caldarium)
Phylloquinone (450 Da, Ligand)
Lhcr3 (23 kDa, Protein from Cyanidium caldarium)
Photosystem i reaction center subunit xii (3 kDa, Protein from Cyanidium caldarium)
Lhcr2 (24 kDa, Protein from Cyanidium caldarium)
Photosystem i reaction center subunit iv (6 kDa, Protein from Cyanidium caldarium)
Chlorophyll a isomer (893 Da, Ligand)
Photosystem i reaction center subunit xi (15 kDa, Protein from Cyanidium caldarium)
Chlorophyll a (893 Da, Ligand)
Photosystem i reaction center subunit iii (20 kDa, Protein from Cyanidium caldarium)
Photosystem i reaction center subunit ix (4 kDa, Protein from Cyanidium caldarium)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Beta-carotene (536 Da, Ligand)
(1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{r} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Cyanidium caldarium)
Photosystem i subunit o (16 kDa, Protein from Cyanidium caldarium)
Water (18 Da, Ligand)
Psi-lhci (550 kDa, Complex from Cyanidium caldarium)
Lhcr1 (24 kDa, Protein from Cyanidium caldarium)
Iron/sulfur cluster (351 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Unknown ligand (Ligand)
Photosystem i iron-sulfur center (8 kDa, Protein from Cyanidium caldarium)
Photosystem i reaction center subunit ii (15 kDa, Protein from Cyanidium caldarium)
Photosystem i reaction center subunit viii (3 kDa, Protein from Cyanidium caldarium)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Cyanidium caldarium)
Dodecyl-beta-d-maltoside (510 Da, Ligand)

[Show more]

Filter By

Filter By