Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.
Cryo-EM structure of ATP8B1-CDC50A in E1-ATP conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ox4
Q-score: 0.461
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- Phospholipid-transporting atpase ic (136 kDa, Protein from Homo sapiens)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E1P-ADP conformation
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ox5
Q-score: 0.389
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- Phospholipid-transporting atpase ic (136 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E1P conformation
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 8ox6
Q-score: 0.509
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- Phospholipid-transporting atpase ic (136 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited "closed" conformation
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 8ox7
Q-score: 0.579
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- (2r)-3-{[(r)-{[(1s,2s,3r,4s,5s,6s)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane -1,2-diyl dioctanoate (826 Da, Ligand)
- Phospholipid-transporting atpase ic (143 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited "open" conformation
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8ox8
Q-score: 0.538
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- (2r)-3-{[(r)-{[(1s,2s,3r,4s,5s,6s)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane -1,2-diyl dioctanoate (826 Da, Ligand)
- Phospholipid-transporting atpase ic (143 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E2P active conformation with bound PC
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8ox9
Q-score: 0.519
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- Phospholipid-transporting atpase ic (136 kDa, Protein from Homo sapiens)
- (2r)-3-{[(r)-{[(1s,2s,3r,4s,5s,6s)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane -1,2-diyl dioctanoate (826 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PS
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8oxa
Q-score: 0.546
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- Phospholipid-transporting atpase ic (136 kDa, Protein from Homo sapiens)
- (2~{s})-2-azanyl-3-[[(2~{r})-3-hexadecanoyloxy-2-[(~{z})-octadec-9-enoyl]oxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid (762 Da, Ligand)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Oxido(dioxo)vanadium (98 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PC
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8oxb
Q-score: 0.508
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- Phospholipid-transporting atpase ic (136 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Oxido(dioxo)vanadium (98 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E2-Pi conformation with occluded PI
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 8oxc
Q-score: 0.542
Dieudonne T, Kummerer F, Laursen MJ, Stock C, Flygaard RK, Khalid S, Lenoir G, Lyons JA, Lindorff-Larsen K, Nissen P
Nat Commun (2023) 14 pp. 7492-7492 [ Pubmed: 37980352 DOI: doi:10.1038/s41467-023-42828-9 ]
- Atp8b1-cdc50a complex (185 kDa, Complex from Homo sapiens)
- Phospholipid-transporting atpase ic (136 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphoinositol (836 Da, Ligand)
- Water (18 Da, Ligand)
- Cell cycle control protein 50a (41 kDa, Protein from Homo sapiens)
- Oxido(dioxo)vanadium (98 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of ATP8B1-CDC50A in E2P autoinhibited state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7py4
Q-score: 0.523
Dieudonne T, Herrera SA, Laursen MJ, Lejeune M, Stock C, Slimani K, Jaxel C, Lyons JA, Montigny C, Pomorski TG, Nissen P, Lenoir G
eLife (2022) 11 [ Pubmed: 35416773 DOI: doi:10.7554/eLife.75272 ]
- Atp8b1-cdc50a (186 kDa, Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Phospholipid-transporting atpase ic (144 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Cell cycle control protein 50a (37 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)