Electron Microscopy Data Bank

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The 3D structure and in situ arrangements of CatSper channel from the cryo-electron tomography and subtomographic average of mouse wild type sperm flagella

Release date: June 15, 2022
Resolution: 16.8 Å
EM Method: Subtomogram averaging

Zhao Y, Wang H, Wiesehoefer C, Shah NB, Reetz E, Hwang JY, Huang X, Wang TE, Lishko PV, Davies KM, Wennemuth G, Nicastro D, Chung JJ

Nat Commun (2022) 13 pp. 3439-3439 [ DOI: doi:10.1038/s41467-022-31050-8 Pubmed: 35715406 ]

Sample:

Sperm flagella (Cellular component from Mus musculus)

EMD-26206

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The 3D structure and in situ arrangements (Forward slash) of CatSper channel from the cryo-electron tomography and subtomographic average of mouse efcab9 mutant sperm flagella

Release date: June 15, 2022
Resolution: 21.7 Å
EM Method: Subtomogram averaging

Zhao Y, Wang H, Wiesehoefer C, Shah NB, Reetz E, Hwang JY, Huang X, Wang TE, Lishko PV, Davies KM, Wennemuth G, Nicastro D, Chung JJ

Nat Commun (2022) 13 pp. 3439-3439 [ DOI: doi:10.1038/s41467-022-31050-8 Pubmed: 35715406 ]

Sample:

Sperm flagella from efcab9 mutant mouse (Cellular component from Mus musculus)

EMD-26207

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The 3D structure and in situ arrangements (Backslash) of CatSper channel from the cryo-electron tomography and subtomographic average of mouse efcab9 mutant sperm flagella

Release date: June 15, 2022
Resolution: 20.7 Å
EM Method: Subtomogram averaging

Zhao Y, Wang H, Wiesehoefer C, Shah NB, Reetz E, Hwang JY, Huang X, Wang TE, Lishko PV, Davies KM, Wennemuth G, Nicastro D, Chung JJ

Nat Commun (2022) 13 pp. 3439-3439 [ DOI: doi:10.1038/s41467-022-31050-8 Pubmed: 35715406 ]

Sample:

Sperm flagella from efcab9 mutant mouse (Cellular component from Mus musculus)

EMD-26483

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Actin organization during clathrin-mediated endocytosis

Release date: May 11, 2022
EM Method: Tomography

Serwas D, Akamatsu M, Moayed A, Vegesna K, Vasan R, Hill JM, Schoneberg J, Davies KM, Rangamani P, Drubin DG

Dev Cell (2022) 57 pp. 1132-1145.e5 [ DOI: doi:10.1016/j.devcel.2022.04.012 Pubmed: 35504288 ]

Sample:

Clathrin-coated vesicle and associated actin network in sk-mel-2 cell. (Cell from Homo sapiens)

EMD-26484

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In situ map of the clathrin hub

Release date: May 11, 2022
Resolution: 27.0 Å
EM Method: Subtomogram averaging

Serwas D, Akamatsu M, Moayed A, Vegesna K, Vasan R, Hill JM, Schoneberg J, Davies KM, Rangamani P, Drubin DG

Dev Cell (2022) 57 pp. 1132-1145.e5 [ DOI: doi:10.1016/j.devcel.2022.04.012 Pubmed: 35504288 ]

Sample:

In situ map of the clathrin hub (Cell from Homo sapiens)

EMPIAR-10275

Release date: Dec. 19, 2019
Dataset size: 423.5 GB
Experiment type: EMDB

Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

Plant Physiol. (2019) 181 pp. 1050-1058 [ DOI: 10.1104/pp.19.00885 Pubmed: 31501298 ]

Image sets:

Unaligned multiframe micrographs for synthetic carboxysome shells

EMD-20207

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Synthetic beta-carboxysome shell (T=4)

Release date: Sept. 25, 2019
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6owg
Q-score: 0.634

Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

Plant Physiol (2019) 181 pp. 1050-1058 [ Pubmed: 31501298 DOI: doi:10.1104/pp.19.00885 ]

Sample:

Synthetic beta-carboxysome shell (t=4) (Complex from Halothece sp. PCC 7418)

EMD-20208

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Synthetic beta-carboxysome shell (T=3)

Release date: Sept. 25, 2019
Resolution: 3.0 Å
EM Method: Single-particle

Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

Plant Physiol (2019) 181 pp. 1050-1058 [ Pubmed: 31501298 DOI: doi:10.1104/pp.19.00885 ]

Sample:

Synthetic beta-carboxysome shell (t=3) (Complex from Halothece sp. PCC 7418)

EMD-20209

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Synthetic beta-carboxysome shell (prolate full)

Release date: Sept. 25, 2019
Resolution: 4.1 Å
EM Method: Single-particle

Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

Plant Physiol (2019) 181 pp. 1050-1058 [ Pubmed: 31501298 DOI: doi:10.1104/pp.19.00885 ]

Sample:

Synthetic beta-carboxysome shell (t=4) (Complex from Halothece sp. PCC 7418)

EMD-20210

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Synthetic beta-carboxysome shell (T=4)

Release date: Sept. 25, 2019
Resolution: 3.7 Å
EM Method: Single-particle

Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA

Plant Physiol (2019) [ Pubmed: 31501298 DOI: doi:10.1104/pp.19.00885 ]

Sample:

Synthetic beta-carboxysome shell (prolate symmetry expansion focused refinement) (Complex from Halothece sp. PCC 7418)

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