Cryo-EM structure of phage DEV ejection proteins gp72:gp73
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8vxq
Q-score: 0.345
Cingolani G, Lokareddy R, Hou CF, Forti F, Iglesias S, Li F, Pavlenok M, Niederweis M, Briani F
Res Sq (2024) [ DOI: doi:10.21203/rs.3.rs-3941185/v1 Pubmed: 38463957 ]
- Gp72 (57 kDa, Protein from Pseudomonas phage vB PaeP DEV)
- Pseudomonas phage vb_paep_dev (Virus from Pseudomonas phage vB PaeP DEV)
- N4 gp52-like protein (16 kDa, Protein from Pseudomonas phage vB PaeP DEV)
In situ cryo-EM structure of Pseudomonas phage E217 tail baseplate in C6 map
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 8env
Q-score: 0.413
Li F, Hou CD, Lokareddy RK, Yang R, Forti F, Briani F, Cingolani G
Nat Commun (2023) 14 pp. 4052-4052 [ DOI: doi:10.1038/s41467-023-39756-z Pubmed: 37422479 ]
- Structural protein gp33 (11 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Sheath initiator gp34 (11 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Pseudomonas phage vb_paem_e217 (Virus from Pseudomonas phage vB PaeM E217)
- Sheath protein gp31 (53 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Baseplate_j domain-containing protein gp44 (43 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Ripcord gp36 (16 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Structural protein gp45 (54 kDa, Protein from Pseudomonas phage vB PaeM E217)
Pseudomonas phage E217 baseplate complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8eon
Q-score: 0.439
Li F, Hou CD, Lokareddy RK, Yang R, Forti F, Briani F, Cingolani G
Nat Commun (2023) 14 pp. 4052-4052 [ DOI: doi:10.1038/s41467-023-39756-z Pubmed: 37422479 ]
- Baseplate component gp34 (11 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Triplex gp44-b (43 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Baseplate component gp36 (16 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Baseplate component gp38 (21 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Pseudomonas phage vb_paem_e217 (Virus from Pseudomonas phage vB PaeM E217)
- Baseplate spike gp43 (23 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Baseplate component gp37 (19 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Triplex gp45 (54 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Baseplate component gp33 (11 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Baseplate hub gp41 (32 kDa, Protein from Pseudomonas phage vB PaeM E217)
Pseudomonas phage E217 5-fold vertex (capsid and decorating proteins)
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 8frs
Q-score: 0.567
Li F, Hou CD, Lokareddy RK, Yang R, Forti F, Briani F, Cingolani G
Nat Commun (2023) 14 pp. 4052-4052 [ DOI: doi:10.1038/s41467-023-39756-z Pubmed: 37422479 ]
Pseudomonas phage E217 extended sheath and tail tube
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8fuv
Q-score: 0.55
Li F, Hou CD, Lokareddy RK, Yang R, Forti F, Briani F, Cingolani G
Nat Commun (2023) 14 pp. 4052-4052 [ DOI: doi:10.1038/s41467-023-39756-z Pubmed: 37422479 ]
Pseudomonas phage E217 contracted sheath
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8fvg
Q-score: 0.478
Li F, Hou CD, Lokareddy RK, Yang R, Forti F, Briani F, Cingolani G
Nat Commun (2023) 14 pp. 4052-4052 [ DOI: doi:10.1038/s41467-023-39756-z Pubmed: 37422479 ]
Pseudomonas phage E217 neck (portal, head-to-tail connector, collar and gateway proteins)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8fvh
Q-score: 0.484
Li F, Hou CD, Lokareddy RK, Yang R, Forti F, Briani F, Cingolani G
Nat Commun (2023) 14 pp. 4052-4052 [ DOI: doi:10.1038/s41467-023-39756-z Pubmed: 37422479 ]
- E217 collar protein gp28 (14 kDa, Protein from Pseudomonas phage vB PaeM E217)
- Pseudomonas phage vb_paem_e217 (Virus from Pseudomonas phage vB PaeM E217)
- E217 portal protein gp19 (48 kDa, Protein from Pseudomonas phage vB PaeM E217)
- E217 gateway protein gp29 (21 kDa, Protein from Pseudomonas phage vB PaeM E217)
- E217 head-to-tail connector protein gp27 (16 kDa, Protein from Pseudomonas phage vB PaeM E217)
Pseudomonas phage E217 small terminase (TerS)
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 7uxe
Q-score: 0.459
Lokareddy RK, Hou CD, Doll SG, Li F, Gillilan RE, Forti F, Horner DS, Briani F, Cingolani G
J Mol Biol (2022) 434 pp. 167799-167799 [ Pubmed: 36007626 DOI: doi:10.1016/j.jmb.2022.167799 ]
- Small terminase decamer from pseudomonas phage e217 (210 kDa, Complex from Pseudomonas phage vB PaeM E217)
- Small terminase (21 kDa, Protein from Pseudomonas phage vB PaeM E217)