Cryo-EM structure of the Cetacean morbillivirus nucleoprotein-RNA complex
Resolution: 4.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 7oi3
Q-score: 0.31
Zinzula L, Beck F, Klumpe S, Bohn S, Pfeifer G, Bollschweiler D, Nagy I, Plitzko JM, Baumeister W
J Struct Biol (2021) 213 pp. 107750-107750 [ DOI: doi:10.1016/j.jsb.2021.107750 Pubmed: 34089875 ]
- Cetacean morbillivirus nucleoprotein-rna complex (Complex)
- Cetacean morbillivirus nucleoprotein (Complex from Morbillivirus sp.)
- Poly-a 6-mer (1 kDa, RNA from Morbillivirus sp.)
- Poly-a 6-mer (Complex from Morbillivirus sp.)
- Cetacean morbillivirus nucleoprotein (46 kDa, Protein from Morbillivirus sp.)
AAA-ATPase ring of PAN-proteasomes
Resolution: 4.85 Å
EM Method: Single-particle
Fitted PDBs: 6he4
Q-score: 0.182
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Pan-proteasome (1 MDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome-activating nucleotidase (29 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
20S core particle of PAN-proteasomes
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 6he5
Q-score: 0.266
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- 20s-proteasome (Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome subunit alpha (27 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome subunit beta (23 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome-activating nucleotidase (pan) (Complex from Archaeoglobus fulgidus DSM 4304)
- Pan-proteasome (1 MDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome-activating nucleotidase (45 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
20S proteasome from Archaeoglobus fulgidus
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 6he7
Q-score: 0.383
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- Proteasome subunit alpha (26 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
- 20s proteasome (710 kDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome subunit beta (22 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
Resolution: 6.86 Å
EM Method: Single-particle
Fitted PDBs: 6he8
Q-score: 0.115
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- 20s-proteasome (Complex from Archaeoglobus fulgidus DSM 4304)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Proteasome-activating nucleotidase (pan) (Complex from Archaeoglobus fulgidus DSM 4304)
- Pan-proteasome (1 MDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome-activating nucleotidase (44 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome subunit beta (22 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome subunit alpha (27 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Resolution: 6.35 Å
EM Method: Single-particle
Fitted PDBs: 6he9
Q-score: 0.123
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- 20s-proteasome (Complex from Archaeoglobus fulgidus DSM 4304)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Proteasome-activating nucleotidase (pan) (Complex from Archaeoglobus fulgidus DSM 4304)
- Pan-proteasome (1 MDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome-activating nucleotidase (44 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome subunit beta (22 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome subunit alpha (27 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Resolution: 7.04 Å
EM Method: Single-particle
Fitted PDBs: 6hea
Q-score: 0.114
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- 20s-proteasome (Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome subunit alpha (27 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Proteasome-activating nucleotidase (pan) (Complex from Archaeoglobus fulgidus DSM 4304)
- Pan-proteasome (1 MDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome-activating nucleotidase (44 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Proteasome subunit beta (22 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
Resolution: 6.95 Å
EM Method: Single-particle
Fitted PDBs: 6hec
Q-score: 0.114
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- 20s-proteasome (Complex from Archaeoglobus fulgidus DSM 4304)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Proteasome-activating nucleotidase (pan) (Complex from Archaeoglobus fulgidus DSM 4304)
- Pan-proteasome (1 MDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome-activating nucleotidase (44 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome subunit beta (22 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Proteasome subunit alpha (27 kDa, Protein from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Resolution: 6.95 Å
EM Method: Single-particle
Fitted PDBs: 6hed
Q-score: 0.114
Majumder P, Rudack T, Beck F, Danev R, Pfeifer G, Nagy I, Baumeister W
PNAS (2019) 116 pp. 534-539 [ DOI: doi:10.1073/pnas.1817752116 Pubmed: 30559193 ]
- 20s-proteasome (Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome subunit alpha (27 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Proteasome-activating nucleotidase (pan) (Complex from Archaeoglobus fulgidus DSM 4304)
- Pan-proteasome (1 MDa, Complex from Archaeoglobus fulgidus DSM 4304)
- Proteasome-activating nucleotidase (44 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Proteasome subunit beta (22 kDa, Protein from Archaeoglobus fulgidus DSM 4304)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6fvw
Q-score: 0.204
Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko Jr RJ, Sakata E
Cell Rep (2018) 24 pp. 1301-1315.e5 [ Pubmed: 30067984 DOI: doi:10.1016/j.celrep.2018.07.004 ]
- Proteasome subunit beta type-5 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn13 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 4 homolog (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn8 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-3 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-4 (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 26s proteasome regulatory subunit rpn12 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn1 (106 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn5 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn7 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome subunit rpt4 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-2 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 8 homolog (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome complex subunit sem1 (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn3 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-2 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-7 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-5 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 26s proteasome regulatory subunit rpn9 (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 6b homolog (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Probable proteasome subunit alpha type-7 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-4 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn6 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn2 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 6a (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit 7 homolog (47 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin carboxyl-terminal hydrolase rpn11 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 26s proteasome regulatory subunit rpn10 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-6 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit beta type-6 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Proteasome subunit alpha type-1 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))