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SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up)
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 8zc4
Q-score: 0.372
Liu B, Niu X, Deng Y, Zhang Z, Wang Y, Gao X, Liang H, Li Z, Wang Q, Cheng Y, Chen Q, Huang S, Pan Y, Su M, Lin X, Niu C, Chen Y, Yang W, Zhang Y, Yan Q, He J, Zhao J, Chen L, Xiong X
To Be Published
- Heavy chain of d1f6 fab (24 kDa, Protein from Homo sapiens)
- Light chain of d1f6 fab (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron ba.4 spike trimer (6p) in complex with 3 d1f6 fabs (2 rbd up) (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Omicron BA.1 spike protein in complex with a self-assembling trivalent nanobody Tr67
Qin Q, Jiang X, Huo L, Qian J, Yu H, Zhu H, Du W, Cao Y, Zhang X, Huang Q
J Nanobiotechnology (2024) 22 pp. 58-58 [ DOI: doi:10.1186/s12951-024-02329-3 Pubmed: 38341574 ]
- Sars-cov-2 omicron ba.1 spike protein in complex with a self-assembling trivalent nanobody tr67 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Trivalent nanobody (Complex from synthetic construct)
- Sars-cov-2 omicron ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8xi6
Q-score: 0.612
Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y
J Virol (2024) 98 pp. e0041624-e0041624 [ DOI: doi:10.1128/jvi.00416-24 Pubmed: 38624232 ]
- Complex of spike ectodomain with antibody mo11 fab (500 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Mo11 light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mo11 heavy chain (24 kDa, Protein from Homo sapiens)
S-RBD(Omicron BA.3) in complex with PD of ACE2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8i9e
Q-score: 0.549
To Be Published
- S-rbd (omicron ba.3) (Complex from Homo sapiens)
- S-rbd (omicron ba.3) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Pd of ace2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S-RBD (Omicron BA.2.75) in complex with PD of ACE2
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8i9f
Q-score: 0.573
To Be Published
- S-rbd (omicron ba.2.75) (Complex from Homo sapiens)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Pd of ace2 (Complex)
- S-rbd (omicron ba.2.75) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
S-RBD (Omicron BF.7) in complex with PD of ACE2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8i9g
Q-score: 0.528
To Be Published
- S-rbd (omicron bf.7) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Pd of ace2 (Complex)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S-rbd (omicron bf.7) (Complex from Homo sapiens)
S-RBD (Omicron XBB.1) in complex with PD of ACE2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8i9h
Q-score: 0.51
Li YN, Shen YP, Zhang Y, Yan R
To Be Published
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S-rbd (omicron xbb.1) (Complex from Homo sapiens)
- Processed angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- S-rbd (omicron xbb.1) in complex with pd of ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Pd of ace2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 1)
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8jyk
Q-score: 0.567
Tamura T, Ito J, Uriu K, Zahradnik J, Kida I, Anraku Y, Nasser H, Shofa M, Oda Y, Lytras S, Nao N, Itakura Y, Deguchi S, Suzuki R, Wang L, Begum MM, Kita S, Yajima H, Sasaki J, Sasaki-Tabata K, Shimizu R, Tsuda M, Kosugi Y, Fujita S, Pan L, Sauter D, Yoshimatsu K, Suzuki S, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Yamamoto Y, Nagamoto T, Schreiber G, Maenaka K, Hashiguchi T, Ikeda T, Fukuhara T, Saito A, Tanaka S, Matsuno K, Takayama K, Sato K
To Be Published