Electron Microscopy Data Bank

EMD-31851

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V/A-ATPase from Thermus thermophilus, high ATP, state2-1

Release date: July 13, 2022
Resolution: 3.3 Å
EM Method: Single-particle

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

F subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
V/a-atpase from thermus thermophilus, high atp, state2-1 (700 kDa, Complex from Thermus thermophilus HB8)
C subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
B subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
G subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
E subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)

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EMD-31852

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V/A-ATPase from Thermus thermophilus, high ATP, state2-2

Release date: July 13, 2022
Resolution: 4.0 Å
EM Method: Single-particle

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

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EMD-31853

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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-1

Release date: July 13, 2022
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7van
Q-score: 0.518

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

Phosphate ion (94 Da, Ligand)
V1eg of v/a-atpase from thermus thermophilus, high atp, state2-1 (400 kDa, Complex from Thermus thermophilus HB8)
Magnesium ion (24 Da, Ligand)
V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase, subunit g (13 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
Adenosine-5'-triphosphate (507 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)

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EMD-31854

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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-2

Release date: July 13, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7vao
Q-score: 0.474

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

Phosphate ion (94 Da, Ligand)
Magnesium ion (24 Da, Ligand)
V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase, subunit g (13 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V1eg of v/a-atpase from thermus thermophilus, high atp, state2-2 (400 kDa, Complex from Thermus thermophilus HB8)
V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
Adenosine-5'-triphosphate (507 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)

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EMD-31855

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V/A-ATPase from Thermus thermophilus, high ATP, state3-1

Release date: July 13, 2022
Resolution: 3.3 Å
EM Method: Single-particle

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

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EMD-31856

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V/A-ATPase from Thermus thermophilus, high ATP, state3-2

Release date: July 13, 2022
Resolution: 4.5 Å
EM Method: Single-particle

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

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EMD-31857

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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-2

Release date: July 13, 2022
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7vap
Q-score: 0.511

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

Phosphate ion (94 Da, Ligand)
Magnesium ion (24 Da, Ligand)
V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
V1eg of v/a-atpase from thermus thermophilus, high atp, state3-1 (400 kDa, Complex from Thermus thermophilus HB8)
V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
Adenosine-5'-triphosphate (507 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)

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EMD-31858

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V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state3-2

Release date: July 13, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7vaq
Q-score: 0.444

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

Phosphate ion (94 Da, Ligand)
Magnesium ion (24 Da, Ligand)
V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
V1eg of v/a-atpase from thermus thermophilus, high atp, state3-2 (400 kDa, Complex from Thermus thermophilus HB8)
V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
Adenosine-5'-triphosphate (507 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)

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EMD-31859

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V/A-ATPase from Thermus thermophilus at low ATP concentration, state1

Release date: July 13, 2022
Resolution: 2.7 Å
EM Method: Single-particle

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

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EMD-31860

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V1EG domain of V/A-ATPase from Thermus thermophilus at low ATP concentration, state1-1

Release date: July 13, 2022
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7var
Q-score: 0.551

Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K

Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]

Sample:

V/a-atpase from thermus thermophilus at low atp concentration, state1-1 (500 kDa, Complex from Thermus thermophilus HB8)
Magnesium ion (24 Da, Ligand)
V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
Adenosine-5'-triphosphate (507 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)

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