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Cryo-EM composite map of Euglena gracilis complex I, turnover state
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8j9i
Q-score: 0.584
He Z, Wu M, Tian H, Wang L, Hu Y, Han F, Zhou J, Wang Y, Zhou L
Nat Commun (2024) 15 pp. 1628-1628 [ Pubmed: 38388527 DOI: doi:10.1038/s41467-024-46018-z ]
- Ndufab1-beta (14 kDa, Protein from Euglena gracilis)
- Ndufs1a (43 kDa, Protein from Euglena gracilis)
- Nd2b (15 kDa, Protein from Euglena gracilis)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Ndufs1b (59 kDa, Protein from Euglena gracilis)
- Ndufa12 (33 kDa, Protein from Euglena gracilis)
- Nd5 (68 kDa, Protein from Euglena gracilis)
- Ndufb10 (17 kDa, Protein from Euglena gracilis)
- Ndufa1 (15 kDa, Protein from Euglena gracilis)
- Ndufv2 (25 kDa, Protein from Euglena gracilis)
- Ndufa5 (20 kDa, Protein from Euglena gracilis)
- Ndufs5 (14 kDa, Protein from Euglena gracilis)
- Ndufv1 (57 kDa, Protein from Euglena gracilis)
- Zinc ion (65 Da, Ligand)
- Ndufab1-alpha (14 kDa, Protein from Euglena gracilis)
- Ndueg11 (11 kDa, Protein from Euglena gracilis)
- Nduca3 (28 kDa, Protein from Euglena gracilis)
- Ndufb11 (13 kDa, Protein from Euglena gracilis)
- 1,4-dihydronicotinamide adenine dinucleotide (665 Da, Ligand)
- Ndufs2 (45 kDa, Protein from Euglena gracilis)
- Ndueg4 (41 kDa, Protein from Euglena gracilis)
- Ndueg12 (11 kDa, Protein from Euglena gracilis)
- Ndueg7 (26 kDa, Protein from Euglena gracilis)
- Ndufs4 (23 kDa, Protein from Euglena gracilis)
- Ndueg13 (17 kDa, Protein from Euglena gracilis)
- Ubiquinone-10 (863 Da, Ligand)
- Ndufa2 (21 kDa, Protein from Euglena gracilis)
- Unk-unk-unk-unk-unk-unk-unk-unk-unk-unk-unk-unk (1 kDa, Protein from Euglena gracilis)
- Potassium ion (39 Da, Ligand)
- Ndufa3 (14 kDa, Protein from Euglena gracilis)
- Ndufa7 (16 kDa, Protein from Euglena gracilis)
- Nduca1 (48 kDa, Protein from Euglena gracilis)
- Ndufa9 (54 kDa, Protein from Euglena gracilis)
- Nduca2 (28 kDa, Protein from Euglena gracilis)
- Ndufs8 (24 kDa, Protein from Euglena gracilis)
- Ndufa6 (48 kDa, Protein from Euglena gracilis)
- Ndueg5 (29 kDa, Protein from Euglena gracilis)
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nd3 (34 kDa, Protein from Euglena gracilis)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Nd1 (79 kDa, Protein from Euglena gracilis)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Ndufb6 (10 kDa, Protein from Euglena gracilis)
- Ndueg8 (23 kDa, Protein from Euglena gracilis)
- Ndufa13 (22 kDa, Protein from Euglena gracilis)
- Ndufb2 (17 kDa, Protein from Euglena gracilis)
- Ndufx (37 kDa, Protein from Euglena gracilis)
- Ndufc2 (22 kDa, Protein from Euglena gracilis)
- Ndufb5 (15 kDa, Protein from Euglena gracilis)
- Ndufb4 (19 kDa, Protein from Euglena gracilis)
- Ndueg1 (53 kDa, Protein from Euglena gracilis)
- Nd4l (19 kDa, Protein from Euglena gracilis)
- Ndufb7 (12 kDa, Protein from Euglena gracilis)
- Ndufb9 (18 kDa, Protein from Euglena gracilis)
- Ndueg2 (50 kDa, Protein from Euglena gracilis)
- Ndueg6 (43 kDa, Protein from Euglena gracilis)
- Ndufa8 (25 kDa, Protein from Euglena gracilis)
- Nadh-ubiquinone oxidoreductase chain 4 (56 kDa, Protein from Euglena gracilis)
- Ndufb8 (20 kDa, Protein from Euglena gracilis)
- Ndueg3 (46 kDa, Protein from Euglena gracilis)
- Ndufs3 (32 kDa, Protein from Euglena gracilis)
- Ndufb3 (6 kDa, Protein from Euglena gracilis)
- Ndufs6 (17 kDa, Protein from Euglena gracilis)
- Ndufs7 (22 kDa, Protein from Euglena gracilis)
- Nd2a (35 kDa, Protein from Euglena gracilis)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ndufa11 (32 kDa, Protein from Euglena gracilis)
- Ndueg10 (14 kDa, Protein from Euglena gracilis)
- Euglena gracilis respiratory complex i, turnover state (1 MDa, Complex from Euglena gracilis)
Antibody N3-1 bound to RBDs in the up and down conformations
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8tm1
Q-score: 0.543
Goike J, Hsieh CL, Horton AP, Gardner EC, Zhou L, Bartzoka F, Wang N, Javanmardi K, Herbert A, Abbassi S, Xie X, Xia H, Shi PY, Renberg R, Segall-Shapiro TH, Terrace CI, Wu W, Shroff R, Byrom M, Ellington AD, Marcotte EM, Musser JM, Kuchipudi SV, Kapur V, Georgiou G, Weaver SC, Dye JM, Boutz DR, McLellan JS, Gollihar JD
Commun Biol (2023) 6 pp. 1250-1250 [ DOI: doi:10.1038/s42003-023-05649-6 Pubmed: 38082099 ]
- N3-1 fab (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- N3-1 fab light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- The complex of n3-1 fab bound to two receptor binding domains of the spike (Complex)
- N3-1 fab heavy chain (14 kDa, Protein from Homo sapiens)
Antibody N3-1 bound to SARS-CoV-2 spike
Goike J, Hsieh CL, Horton AP, Gardner EC, Zhou L, Bartzoka F, Wang N, Javanmardi K, Herbert A, Abbassi S, Xie X, Xia H, Shi PY, Renberg R, Segall-Shapiro TH, Terrace CI, Wu W, Shroff R, Byrom M, Ellington AD, Marcotte EM, Musser JM, Kuchipudi SV, Kapur V, Georgiou G, Weaver SC, Dye JM, Boutz DR, McLellan JS, Gollihar JD
Commun Biol (2023) 6 pp. 1250-1250 [ DOI: doi:10.1038/s42003-023-05649-6 Pubmed: 38082099 ]
- Sars-cov-2 spike (Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of n3-1 bound to sars-cov-2 spike (Complex)
- N3-1 fab light chain (Protein from Homo sapiens)
- N3-1 fab heavy chain (Protein from Homo sapiens)
- N3-1 (Complex from Homo sapiens)
Cryo-EM map of Tetrahymena thermophila megacomplex IV2+(I+III2+II)2