EMD-62357

Single-particle
2.55 Å
EMD-62357
3D View Gallery
Deposition: 11/11/2024
Map released: 19/02/2025
Last modified: 19/02/2025
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-62357

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-9khv summary report (pdf.gz) Map-9khv FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

Structure of DdmD dimer with ssDNA without nucleotide

EMD-62357

Single-particle
2.55 Å
EMD-62357
3D View Gallery
Deposition: 11/11/2024
Map released: 19/02/2025
Last modified: 19/02/2025
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Vibrio cholerae O1 biovar El Tor str. N16961, synthetic construct
Sample: DdmD dimer with ssDNA without nucleotide
Fitted models: 9khv

Deposition Authors: Lin ZH, Gao HS, Liu YS, Li RY
A gate-clamp mechanism for ssDNA translocation by DdmD in Vibrio cholerae plasmid defense.
Li R, Liu Y, Gao H , Lin Z
(2025) Nucleic Acids Res , 53
PUBMED: 39907109
DOI: doi:10.1093/nar/gkaf064
ISSN: 1362-4962
ASTM: NARHAD