EMD-39578

Single-particle
2.39 Å
EMD-39578
3D View Gallery
Deposition: 28/03/2024
Map released: 06/11/2024
Last modified: 01/07/2026
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-39578

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-8yup summary report (pdf.gz) Map-8yup FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

EMD-39578

Single-particle
2.39 Å
EMD-39578
3D View Gallery
Deposition: 28/03/2024
Map released: 06/11/2024
Last modified: 01/07/2026
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Escherichia coli, Escherichia coli BW25113, Pseudomonas putida NBRC 14164
Sample: The complex of E. coli 70S ribosome with mRNA and A-, P- site tRNA
Fitted models: 8yup

Deposition Authors: Akiyama N , Ishiguro K , Shirouzu M , Suzuki T
A tRNA modification with aminovaleramide facilitates AUA decoding in protein synthesis.
Miyauchi K , Kimura S , Akiyama N , Inoue K, Ishiguro K , Vu TS, Srisuknimit V , Koyama K, Hayashi G , Soma A, Nagao A, Shirouzu M , Okamoto A , Waldor MK , Suzuki T
(2025) Nat Chem Biol , 21 , 522 - 531
PUBMED: 39300229
DOI: doi:10.1038/s41589-024-01726-x
ISSN: 1552-4469