EMD-39185

Single-particle
8.0 Å
EMD-39185
3D View Gallery
Deposition: 21/02/2024
Map released: 15/01/2025
Last modified: 30/07/2025
Overview 3D View Sample Experiment Validation Additional data Links
Overview 3D View Sample Experiment Validation Additional data Links

EMD-39185

Archive Files (Depositor)

Primary 3D volume (map.gz) Half-map 1 Half-map 2 (map.gz) Experimental metadata (xml) Experimental metadata (cif.gz)

Validation (wwPDB)

Map-only validation report (pdf.gz) Map-8ydy summary report (pdf.gz) Map-8ydy FULL report (pdf.gz)

EMDB Annotations

EMICSS entry mapping (xml)

EMDB Files

VA raw map (map) VA resolution mask (mrc)

Cryo-EM structure of SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE, class 1

EMD-39185

Single-particle
8.0 Å
EMD-39185
3D View Gallery
Deposition: 21/02/2024
Map released: 15/01/2025
Last modified: 30/07/2025
Overview 3D View Sample Experiment Validation Additional data Links
Sample Organism: Severe acute respiratory syndrome coronavirus 2, synthetic construct
Sample: SARS-CoV-2 spike ectodomain (HexaPro, Omicron BA.5 variant) in complex with CeSPIACE
Fitted models: 8ydy

Deposition Authors: Suzuki H, Nakamura S , Fujiyoshi Y
Structure-guided engineering of a mutation-tolerant inhibitor peptide against variable SARS-CoV-2 spikes.
Nakamura S , Tanimura Y, Nomura R, Suzuki H, Nishikawa K, Kamegawa A , Numoto N , Tanaka A , Kawabata S , Sakaguchi S , Emi A, Suzuki Y , Fujiyoshi Y
(2025) PNAS , 122 , e2413465122 - e2413465122
PUBMED: 39854234
DOI: doi:10.1073/pnas.2413465122
ISSN: 1091-6490
ASTM: PNASA6