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database:EMPIAR

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Current Database

  • EMPIAR [2265]

Current status

  • REL [2265]

Release Date

  • 2025 [319]
  • 2024 [415]
  • 2023 [402]
  • 2022 [379]
  • 2021 [273]
  • 2020 [210]
  • 2019 [85]
  • 2018 [76]
  • 2017 [38]
  • 2016 [30]
  • 2015 [22]
  • 2014 [12]
  • 2013 [4]

Author by name

  • Potter CS [59]
  • Carragher B [58]
  • Chen J [53]
  • Noble AJ [45]
  • Shapiro L [45]
  • Kotecha A [43]
  • Eng ET [40]
  • Zhang Z [40]
  • Dandey VP [39]
  • Tan YZ [36]
  • Darst SA [32]
  • Nishizawa T [32]
  • Brasch J [31]
  • Wei H [31]
  • Kwong PD [30]
  • Rapp M [30]
  • Ranson NA [29]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Fraser JS [27]
  • Scheres SHW [27]
  • Seiple IB [27]
  • Chiu W [26]
  • Beck M [25]
  • Cheng Y [25]
  • Cheng A [24]
  • Kato T [24]
  • Namba K [24]
  • Des Georges A [24]
  • Danev R [23]
  • Hirst J [23]
  • Murzin AG [23]
  • Shi Y [23]
  • Glatt S [22]
  • Lee Y [22]
  • Nureki O [22]
  • Steyer AM [22]
  • Campbell EA [21]
  • Cerutti G [21]
  • Ghetti B [21]
  • Paulino C [21]
  • Brohawn SG [20]
  • Butcher SJ [20]
  • Clarke OB [20]
  • Kim LY [20]
  • Negro CJ [20]
  • Acharya P [19]
  • Chase J [19]
  • Jeruzalmi D [19]
  • Scapin G [19]
  • Skiniotis G [19]
  • Garringer HJ [18]
  • Herzik Jr Ma [18]
  • Li S [18]
  • Makino F [18]
  • Rheinberger J [18]
  • Vidal R [18]
  • Grant T [17]
  • Plitzko JM [17]
  • Bhabha G [16]
  • Fändrich M [16]
  • Goedert M [16]
  • Harkiolaki M [16]
  • Huang W [16]
  • Koziej L [16]
  • Lander GC [16]
  • Mahamid J [16]
  • Masiulis S [16]
  • Rice WJ [16]
  • Schmidt M [16]
  • Schwab Y [16]
  • Stahlberg H [16]
  • Yamashita K [16]
  • Zhang K [16]
  • Zhang W [16]
  • Aricescu AR [15]
  • Arseni D [15]
  • Das R [15]
  • Jinek M [15]
  • Kounatidis I [15]
  • Passmore LA [15]
  • Turoňová B [15]
  • Villa E [15]
  • Yin Z [15]
  • Zhang B [15]
  • Bridges HR [14]
  • Collinson L [14]
  • Egelman EH [14]
  • He Q [14]
  • Katsamba PS [14]
  • Kusakizako T [14]
  • Liu Y [14]
  • Malinauskas T [14]
  • Naydenova K [14]
  • Nye G [14]
  • Okolo CA [14]
  • Wilson DN [14]
  • Zhang J [14]
  • Zhang X [14]
  • Zhou X [14]

Journal

  • NAT COMMUN [300]
  • BIORXIV [294]
  • NATURE [212]
  • NAT STRUCT MOL BIOL [139]
  • ELIFE [120]
  • PNAS [98]
  • MOL CELL [89]
  • SCIENCE [77]
  • CELL [72]
  • SCI ADV [68]
  • STRUCTURE [45]
  • J STRUCT BIOL [43]
  • CELL REP [40]
  • STRUCTURE (LONDON, ENGLAND : 1993) [35]
  • COMMUN BIOL [27]
  • NAT METHODS [23]
  • EMBO J [22]
  • NUCLEIC ACIDS RES [19]
  • COMMUNICATIONS BIOLOGY [18]
  • SCI REP [16]
  • IUCRJ [14]
  • J BIOL CHEM [14]
  • J STRUCT BIOL X [13]
  • ACTA CRYSTALLOGR D STRUCT BIOL [12]
  • COMMUN. BIOL. [12]
  • NAT CELL BIOL [12]
  • NAT MICROBIOL [12]
  • NAT PROTOC [12]
  • NAT CHEM BIOL [11]
  • GLIA [9]
  • J CELL BIOL [9]
  • J MOL BIOL [9]
  • NAT PLANTS [9]
  • COMMUN CHEM [8]
  • COMMUNICATIONS CHEMISTRY [8]
  • EMBO REP [8]
  • J AM CHEM SOC [8]
  • J MED CHEM [8]
  • JOURNAL OF MEDICINAL CHEMISTRY [8]
  • JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [8]
  • BMC BIOL [7]
  • BMC BIOLOGY [7]
  • CELL HOST MICROBE [7]
  • DRUG DISCOV TODAY [7]
  • J VIROL [7]
  • DIS MODEL MECH [6]
  • J MICROSC [6]
  • PLOS PATHOG [6]
  • FRONT MOL BIOSCI [5]
  • GENOME BIOL EVOL [5]
  • IMMUNITY [5]
  • LIFE SCI ALLIANCE [5]
  • MICROSCOPY [5]
  • PLOS BIOL [5]
  • RESEARCH SQUARE [5]
  • DEV CELL [4]
  • METHODS IN CELL BIOLOGY [4]
  • MOL BIOL CELL [4]
  • PLOS ONE [4]
  • PNAS NEXUS [4]
  • SCI SIGNAL [4]
  • SCIENCE SIGNALING [4]
  • STRUCT. [4]
  • BIOMOLECULES [3]
  • FRONT MICROBIOL [3]
  • FRONTIERS [3]
  • INT J MOL SCI [3]
  • INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [3]
  • J BACTERIOL [3]
  • JBC [3]
  • MBIO [3]
  • METH CELL BIOL [3]
  • METHODS IN MICROSCOPY [3]
  • NAT COMM [3]
  • NATURE CATALYSIS [3]
  • NEURON [3]
  • PROG BIOPHYS MOL BIOL [3]
  • SCI ADV. [3]
  • SCI IMMUNOL [3]
  • SCIENCE IMMUNOLOGY [3]
  • VIRUSES [3]
  • ACS CATALYSIS [2]
  • ANAL CHEM [2]
  • ANGEW CHEM INT ED ENGL [2]
  • ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [2]
  • ARXIV [2]
  • BIOCHEM J [2]
  • BIOPHYS REV [2]
  • BLOOD [2]
  • CELL REP PHYS SCI [2]
  • CELL REPORTS METHODS [2]
  • CELL REPORTS. PHYSICAL SCIENCE [2]
  • CHEM [2]
  • COMMS.BIOL. [2]
  • EMBO REPORTS [2]
  • FRONTIERS IN MICROBIOLOGY [2]
  • ISCIENCE [2]
  • J CELL SCI [2]
  • J MUSCLE RES CELL MOTIL [2]
  • J VIS EXP [2]

EMPIAR Experiment type

  • EMDB [2062]
  • FIB-SEM [78]
  • SBF-SEM [41]
  • EXCEPTION [17]
  • CLEM [15]
  • SSET [14]
  • SXT [12]
  • CLXM [11]
  • ATUM-SEM [5]
  • HARD X-RAY/X-RAY MICROCT [4]
  • MICROED [4]
  • IHM [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1609]
  • MICROGRAPHS - SINGLE FRAME [487]
  • TILT SERIES [265]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [103]
  • RECONSTRUCTED VOLUMES [101]
  • PICKED PARTICLES - MULTIFRAME - PROCESSED [76]
  • PICKED PARTICLES - MULTIFRAME - UNPROCESSED [23]
  • PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [19]
  • CLASS AVERAGES [14]
  • SUBTOMOGRAMS [7]
  • DIFFRACTION IMAGES [6]
  • STITCHED MAPS [4]
  • PARTICLE PICKING [3]
  • MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [2]
  • ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
  • MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
  • MODEL [1]
  • SOFT X-RAY TOMOGRAMS [1]

External links

  • EMDB [2058]
  • BioImage Archive [26]
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EMPIAR-12689
Related EMDB
EMD-41154
Integrin αvβ6 in complex with minibinder
Release date: July 10, 2025
Dataset size: 1.7 TB
Experiment type: EMDB

Roy A, Shi L, Chang A, Dong X, Fernandez A, Kraft JC, Li J, Le VQ, Winegar RV, Cherf GM, Slocum D, Poulson PD, Casper GE, Vallecillo-Zuniga ML, Valdoz JC, Miranda MC, Bai H, Kipnis Y, Olshefsky A, Priya T, Carter L, Ravichandran R, Chow CM, Johnson MR, Cheng S, Smith M, Overed-Sayer C, Finch DK, Lowe D, Bera AK, Matute-Bello G, Birkland TP, DiMaio F, Raghu G, Cochran JR, Stewart LJ, Campbell MG, Van Ry PM, Springer T, Baker D

Nat Commun (2023) 14 [ DOI: 10.1038/s41467-023-41272-z Pubmed: 37704610 ]

Image sets:
  • Unaligned multiframe micrographs of integrin avB6 headpiece in complex with minibinder
EMPIAR-12856
Related EMDB
EMD-53458
Cryo-electron tomography of permeabilised CEM T lymphoblasts incubated with isolated HIV-1 cores
Release date: July 10, 2025
Dataset size: 9.9 GB
Experiment type: EMDB

Hou Z

To Be Published

Image sets:
  • Motion corrected stacks of tilt series of permeabilised CEM T lymphoblast cells incubated with isolated HIV-1 VLP cores
EMPIAR-12157
IsoVEM: Accurate and Robust Isotropic Reconstruction for Volume Electron Microscopy Using a Video Transformer
Release date: July 8, 2025
Dataset size: 4.4 GB
Experiment type: ATUM-SEM

Zhang Y

To Be Published

Image sets:
  • Raw micrographs of curved spermatotubule in mouse testis collected by AutoCuts-SEM
EMPIAR-12202
Related EMDB
EMD-45746
Micrographs for EMD-45746, EMD-45645, EMD-45646, and EMD-45665: Structure of WT DosP bound to c-di-GMP
Release date: July 8, 2025
Dataset size: 3.6 TB
Experiment type: EMDB

Wu W, Kumar P, Brautigam CA, Tso SC, Baniasadi HR, Kober DL, Gilles-Gonzalez MA

Nat Commun (2024) 15 [ Pubmed: 39511182 DOI: 10.1038/s41467-024-53942-7 ]

Image sets:
  • raw micrographs for substrate-bound DosP-FLAG
EMPIAR-12305
Related EMDB
EMD-10829 EMD-10830 EMD-10828
Raw cryo-EM micrographs from the publication "Structure and Function of Stator Units of the Bacterial Flagellar Motor"
Release date: July 8, 2025
Dataset size: 25.6 TB
Experiment type: EMDB

Santiveri M, Roa-Eguiara A, Kühne C, Wadhwa N, Hu H, Berg HC, Erhardt M, Taylor NMI

Cell (2020) 183 pp. 244-257.e16 [ DOI: 10.1016/j.cell.2020.08.016 Pubmed: 32931735 ]

Image sets:
  • Raw micrographs from the manuscript 'Structure and Function of Stator Units of the Bacterial Flagellar Motor'
EMPIAR-12403
Related EMDB
EMD-14121 EMD-15905
Cryo electron microscopy unaligned movie frames for single particle analysis of the Escherichia coli 70S ribosome with Myxovalargin B
Release date: July 8, 2025
Dataset size: 5.3 TB
Experiment type: EMDB

Koller TO, Scheid U, Kösel T, Herrmann J, Krug D, Boshoff HIM, Beckert B, Evans JC, Schlemmer J, Sloan B, Weiner DM, Via LE, Moosa A, Ioerger TR, Graf M, Zinshteyn B, Abdelshahid M, Nguyen F, Arenz S, Gille F, Siebke M, Seedorf T, Plettenburg O, Green R, Warnke AL, Ullrich J, Warrass R, Barry CE, Warner DF, Mizrahi V, Kirschning A, Wilson DN, Müller R

Journal of the American Chemical Society (2023) 145 pp. 851-863 [ DOI: 10.1021/jacs.2c08816 Pubmed: 36603206 ]

Image sets:
  • Unaligned movies of cryo-EM data collection of antimicrobial peptide Myxovalaring B from Myxococcus fulvus bound to the 70S E.coli ribosome
EMPIAR-12473
Electron tomography - Myotubes:Fam134bKO and WT
Release date: July 8, 2025
Dataset size: 1.4 GB
Experiment type: ssET

Grumati G, Cortese M, Swuec P, Silva M

EMBO Reports ()

Image sets:
  • Myotubes_WT and Myotubes_Fam134bKO
EMPIAR-12659
FIB-SEM Nicotiana benthamiana epidermal cell
Release date: July 8, 2025
Dataset size: 623.5 GB
Experiment type: FIB-SEM

Wickramanayake J, Czymmek KJ

Methods in Cell Biology () [ DOI: 10.1016/bs.mcb.2023.04.008 ]

Image sets:
  • FIB-SEM Nicotiana benthamiana epidermal cell dataset - Merge images aligned by Amira
  • FIB-SEM Nicotiana benthamiana epidermal cell dataset - Manual user annotation of ROI on Low resolution image
  • FIB-SEM Nicotiana benthamiana epidermal cell dataset - Low resolution
  • FIB-SEM Nicotiana benthamiana epidermal cell dataset - High resolution of ROI
[Show more]
EMPIAR-12674
FIB-SEM Mouse kidney tissue samples
Release date: July 8, 2025
Dataset size: 9.1 GB
Experiment type: FIB-SEM

Fitzpatrick JAJ, Czymmek KJ, Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S

To Be Published

Image sets:
  • FIB-SEM Kidney tissue dataset
EMPIAR-12675
FIB-SEM Rat brain tissue samples
Release date: July 8, 2025
Dataset size: 829.7 MB
Experiment type: FIB-SEM

Fitzpatrick JAJ, Czymmek KJ, Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S

To Be Published

Image sets:
  • FIB-SEM Rat brain tissue dataset
  • FIB-SEM Rat brain tissue dataset - annotation by user
Sort by: Download
Showing 1 - 10 of 2265. Page 1 of 227
Display:
Statistics
×

Download










































Preview first 10
Download

Filter By

Current Database

  • EMPIAR [2265]

Current status

  • REL [2265]

Release Date

  • 2025 [319]
  • 2024 [415]
  • 2023 [402]
  • 2022 [379]
  • 2021 [273]
  • 2020 [210]
  • 2019 [85]
  • 2018 [76]
  • 2017 [38]
  • 2016 [30]
  • 2015 [22]
  • 2014 [12]
  • 2013 [4]

Author by name

  • Potter CS [59]
  • Carragher B [58]
  • Chen J [53]
  • Noble AJ [45]
  • Shapiro L [45]
  • Kotecha A [43]
  • Eng ET [40]
  • Zhang Z [40]
  • Dandey VP [39]
  • Tan YZ [36]
  • Darst SA [32]
  • Nishizawa T [32]
  • Brasch J [31]
  • Wei H [31]
  • Kwong PD [30]
  • Rapp M [30]
  • Ranson NA [29]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Fraser JS [27]
  • Scheres SHW [27]
  • Seiple IB [27]
  • Chiu W [26]
  • Beck M [25]
  • Cheng Y [25]
  • Cheng A [24]
  • Kato T [24]
  • Namba K [24]
  • Des Georges A [24]
  • Danev R [23]
  • Hirst J [23]
  • Murzin AG [23]
  • Shi Y [23]
  • Glatt S [22]
  • Lee Y [22]
  • Nureki O [22]
  • Steyer AM [22]
  • Campbell EA [21]
  • Cerutti G [21]
  • Ghetti B [21]
  • Paulino C [21]
  • Brohawn SG [20]
  • Butcher SJ [20]
  • Clarke OB [20]
  • Kim LY [20]
  • Negro CJ [20]
  • Acharya P [19]
  • Chase J [19]
  • Jeruzalmi D [19]
  • Scapin G [19]
  • Skiniotis G [19]
  • Garringer HJ [18]
  • Herzik Jr Ma [18]
  • Li S [18]
  • Makino F [18]
  • Rheinberger J [18]
  • Vidal R [18]
  • Grant T [17]
  • Plitzko JM [17]
  • Bhabha G [16]
  • Fändrich M [16]
  • Goedert M [16]
  • Harkiolaki M [16]
  • Huang W [16]
  • Koziej L [16]
  • Lander GC [16]
  • Mahamid J [16]
  • Masiulis S [16]
  • Rice WJ [16]
  • Schmidt M [16]
  • Schwab Y [16]
  • Stahlberg H [16]
  • Yamashita K [16]
  • Zhang K [16]
  • Zhang W [16]
  • Aricescu AR [15]
  • Arseni D [15]
  • Das R [15]
  • Jinek M [15]
  • Kounatidis I [15]
  • Passmore LA [15]
  • Turoňová B [15]
  • Villa E [15]
  • Yin Z [15]
  • Zhang B [15]
  • Bridges HR [14]
  • Collinson L [14]
  • Egelman EH [14]
  • He Q [14]
  • Katsamba PS [14]
  • Kusakizako T [14]
  • Liu Y [14]
  • Malinauskas T [14]
  • Naydenova K [14]
  • Nye G [14]
  • Okolo CA [14]
  • Wilson DN [14]
  • Zhang J [14]
  • Zhang X [14]
  • Zhou X [14]

Journal

  • NAT COMMUN [300]
  • BIORXIV [294]
  • NATURE [212]
  • NAT STRUCT MOL BIOL [139]
  • ELIFE [120]
  • PNAS [98]
  • MOL CELL [89]
  • SCIENCE [77]
  • CELL [72]
  • SCI ADV [68]
  • STRUCTURE [45]
  • J STRUCT BIOL [43]
  • CELL REP [40]
  • STRUCTURE (LONDON, ENGLAND : 1993) [35]
  • COMMUN BIOL [27]
  • NAT METHODS [23]
  • EMBO J [22]
  • NUCLEIC ACIDS RES [19]
  • COMMUNICATIONS BIOLOGY [18]
  • SCI REP [16]
  • IUCRJ [14]
  • J BIOL CHEM [14]
  • J STRUCT BIOL X [13]
  • ACTA CRYSTALLOGR D STRUCT BIOL [12]
  • COMMUN. BIOL. [12]
  • NAT CELL BIOL [12]
  • NAT MICROBIOL [12]
  • NAT PROTOC [12]
  • NAT CHEM BIOL [11]
  • GLIA [9]
  • J CELL BIOL [9]
  • J MOL BIOL [9]
  • NAT PLANTS [9]
  • COMMUN CHEM [8]
  • COMMUNICATIONS CHEMISTRY [8]
  • EMBO REP [8]
  • J AM CHEM SOC [8]
  • J MED CHEM [8]
  • JOURNAL OF MEDICINAL CHEMISTRY [8]
  • JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [8]
  • BMC BIOL [7]
  • BMC BIOLOGY [7]
  • CELL HOST MICROBE [7]
  • DRUG DISCOV TODAY [7]
  • J VIROL [7]
  • DIS MODEL MECH [6]
  • J MICROSC [6]
  • PLOS PATHOG [6]
  • FRONT MOL BIOSCI [5]
  • GENOME BIOL EVOL [5]
  • IMMUNITY [5]
  • LIFE SCI ALLIANCE [5]
  • MICROSCOPY [5]
  • PLOS BIOL [5]
  • RESEARCH SQUARE [5]
  • DEV CELL [4]
  • METHODS IN CELL BIOLOGY [4]
  • MOL BIOL CELL [4]
  • PLOS ONE [4]
  • PNAS NEXUS [4]
  • SCI SIGNAL [4]
  • SCIENCE SIGNALING [4]
  • STRUCT. [4]
  • BIOMOLECULES [3]
  • FRONT MICROBIOL [3]
  • FRONTIERS [3]
  • INT J MOL SCI [3]
  • INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [3]
  • J BACTERIOL [3]
  • JBC [3]
  • MBIO [3]
  • METH CELL BIOL [3]
  • METHODS IN MICROSCOPY [3]
  • NAT COMM [3]
  • NATURE CATALYSIS [3]
  • NEURON [3]
  • PROG BIOPHYS MOL BIOL [3]
  • SCI ADV. [3]
  • SCI IMMUNOL [3]
  • SCIENCE IMMUNOLOGY [3]
  • VIRUSES [3]
  • ACS CATALYSIS [2]
  • ANAL CHEM [2]
  • ANGEW CHEM INT ED ENGL [2]
  • ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [2]
  • ARXIV [2]
  • BIOCHEM J [2]
  • BIOPHYS REV [2]
  • BLOOD [2]
  • CELL REP PHYS SCI [2]
  • CELL REPORTS METHODS [2]
  • CELL REPORTS. PHYSICAL SCIENCE [2]
  • CHEM [2]
  • COMMS.BIOL. [2]
  • EMBO REPORTS [2]
  • FRONTIERS IN MICROBIOLOGY [2]
  • ISCIENCE [2]
  • J CELL SCI [2]
  • J MUSCLE RES CELL MOTIL [2]
  • J VIS EXP [2]

EMPIAR Experiment type

  • EMDB [2062]
  • FIB-SEM [78]
  • SBF-SEM [41]
  • EXCEPTION [17]
  • CLEM [15]
  • SSET [14]
  • SXT [12]
  • CLXM [11]
  • ATUM-SEM [5]
  • HARD X-RAY/X-RAY MICROCT [4]
  • MICROED [4]
  • IHM [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1609]
  • MICROGRAPHS - SINGLE FRAME [487]
  • TILT SERIES [265]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [103]
  • RECONSTRUCTED VOLUMES [101]
  • PICKED PARTICLES - MULTIFRAME - PROCESSED [76]
  • PICKED PARTICLES - MULTIFRAME - UNPROCESSED [23]
  • PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [19]
  • CLASS AVERAGES [14]
  • SUBTOMOGRAMS [7]
  • DIFFRACTION IMAGES [6]
  • STITCHED MAPS [4]
  • PARTICLE PICKING [3]
  • MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [2]
  • ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
  • MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
  • MODEL [1]
  • SOFT X-RAY TOMOGRAMS [1]

External links

  • EMDB [2058]
  • BioImage Archive [26]