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database:EMPIAR

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Current Database

  • EMPIAR [2770]

Current status

  • REL [2770]

Release Date

  • 2026 [158]
  • 2025 [665]
  • 2024 [416]
  • 2023 [402]
  • 2022 [379]
  • 2021 [273]
  • 2020 [210]
  • 2019 [85]
  • 2018 [76]
  • 2017 [38]
  • 2016 [30]
  • 2015 [22]
  • 2014 [12]
  • 2013 [4]

Author by name

  • Chen J [60]
  • Potter CS [59]
  • Carragher B [58]
  • Noble AJ [45]
  • Shapiro L [45]
  • Eng ET [43]
  • Kotecha A [43]
  • Zhang Z [40]
  • Dandey VP [39]
  • Darst SA [38]
  • Drabbels M [38]
  • Lorenz UJ [38]
  • Tan YZ [36]
  • Ranson NA [34]
  • Wei H [34]
  • Nishizawa T [32]
  • Barrass SV [31]
  • Brasch J [31]
  • Beck M [30]
  • Kwong PD [30]
  • Rapp M [30]
  • Chiu W [28]
  • Glatt S [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Fraser JS [27]
  • Harder OF [27]
  • Scheres SHW [27]
  • Seiple IB [27]
  • Cheng Y [26]
  • Campbell EA [25]
  • Danev R [25]
  • Hirst J [25]
  • Hruby J [25]
  • Cheng A [24]
  • Kato T [24]
  • Namba K [24]
  • Des Georges A [24]
  • Murzin AG [23]
  • Nureki O [23]
  • Shi Y [23]
  • Lee Y [22]
  • Steyer AM [22]
  • Bhabha G [21]
  • Butcher SJ [21]
  • Cerutti G [21]
  • Ghetti B [21]
  • Herzik Jr Ma [21]
  • Paulino C [21]
  • Stahlberg H [21]
  • Brohawn SG [20]
  • Clarke OB [20]
  • Kim LY [20]
  • Koziej L [20]
  • Li S [20]
  • Negro CJ [20]
  • Yamashita K [20]
  • Acharya P [19]
  • Chase J [19]
  • Jeruzalmi D [19]
  • Mowry NJ [19]
  • Pacesa M [19]
  • Podobnik M [19]
  • Scapin G [19]
  • Skiniotis G [19]
  • Villa E [19]
  • Garringer HJ [18]
  • Kežar A [18]
  • Makino F [18]
  • Plitzko JM [18]
  • Rheinberger J [18]
  • Vidal R [18]
  • Grant T [17]
  • He Q [17]
  • Jinek M [17]
  • Schwab Y [17]
  • Wang F [17]
  • Zhang K [17]
  • Das R [16]
  • Fändrich M [16]
  • Goedert M [16]
  • Harkiolaki M [16]
  • Huang W [16]
  • Inoue T [16]
  • Koritnik N [16]
  • Lander GC [16]
  • Lee J [16]
  • Liu Y [16]
  • Mahamid J [16]
  • Masiulis S [16]
  • Rice WJ [16]
  • Sawaya MR [16]
  • Schmidt M [16]
  • Zhang W [16]
  • Aricescu AR [15]
  • Arseni D [15]
  • Chirgadze DY [15]
  • Grigorieff N [15]
  • Kounatidis I [15]
  • Kusakizako T [15]

Journal

  • NAT COMMUN [381]
  • BIORXIV [351]
  • NATURE [222]
  • NAT STRUCT MOL BIOL [154]
  • ELIFE [128]
  • PNAS [124]
  • MOL CELL [94]
  • CELL [84]
  • SCI ADV [84]
  • SCIENCE [82]
  • STRUCTURE [55]
  • CELL REP [47]
  • J STRUCT BIOL [43]
  • STRUCTURE (LONDON, ENGLAND : 1993) [43]
  • NAT METHODS [37]
  • COMMUN BIOL [34]
  • EMBO J [31]
  • NUCLEIC ACIDS RES [29]
  • J BIOL CHEM [28]
  • COMMUNICATIONS BIOLOGY [21]
  • SCI REP [18]
  • NAT CELL BIOL [16]
  • NAT MICROBIOL [16]
  • COMMUN. BIOL. [15]
  • IUCRJ [15]
  • NAT CHEM BIOL [15]
  • J STRUCT BIOL X [14]
  • ACTA CRYSTALLOGR D STRUCT BIOL [13]
  • J VIROL [12]
  • NAT PROTOC [12]
  • CELL REPORTS METHODS [11]
  • CELL REP METHODS [10]
  • J AM CHEM SOC [10]
  • J CELL BIOL [10]
  • JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [10]
  • COMMUN CHEM [9]
  • COMMUNICATIONS CHEMISTRY [9]
  • GLIA [9]
  • J MOL BIOL [9]
  • NAT PLANTS [9]
  • EMBO REP [8]
  • J MED CHEM [8]
  • JOURNAL OF MEDICINAL CHEMISTRY [8]
  • BMC BIOL [7]
  • BMC BIOLOGY [7]
  • CELL HOST MICROBE [7]
  • DRUG DISCOV TODAY [7]
  • J MICROSC [7]
  • NAT COMM [7]
  • PLOS PATHOG [7]
  • DIS MODEL MECH [6]
  • PLOS BIOL [6]
  • FRONT MOL BIOSCI [5]
  • GENOME BIOL EVOL [5]
  • IMMUNITY [5]
  • LIFE SCI ALLIANCE [5]
  • MICROSCOPY [5]
  • RESEARCH SQUARE [5]
  • SCI SIGNAL [5]
  • SCIENCE SIGNALING [5]
  • DEV CELL [4]
  • INT J MOL SCI [4]
  • INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [4]
  • METHODS IN CELL BIOLOGY [4]
  • MOL BIOL CELL [4]
  • NAR [4]
  • NATURE CATALYSIS [4]
  • PLOS ONE [4]
  • PNAS NEXUS [4]
  • SCI IMMUNOL [4]
  • SCIENCE IMMUNOLOGY [4]
  • STRUCT. [4]
  • VIRUSES [4]
  • ANGEW CHEM INT ED ENGL [3]
  • ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [3]
  • BIOMOLECULES [3]
  • FRONT MICROBIOL [3]
  • FRONTIERS [3]
  • J BACTERIOL [3]
  • JBC [3]
  • MBIO [3]
  • METH CELL BIOL [3]
  • METHODS IN MICROSCOPY [3]
  • NAT BIOTECHNOL [3]
  • NATURE BIOTECHNOLOGY [3]
  • NEURON [3]
  • NUCLEIC ACID RESEARCH [3]
  • PROG BIOPHYS MOL BIOL [3]
  • SCI ADV. [3]
  • ACS CATALYSIS [2]
  • ADV SCI (WEINH) [2]
  • ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) [2]
  • ANAL CHEM [2]
  • ARXIV [2]
  • BIOCHEM J [2]
  • BIOCHEMISTRY [2]
  • BIOPHYS REV [2]
  • BLOOD [2]
  • CELL REP PHYS SCI [2]
  • CELL REPORTS. PHYSICAL SCIENCE [2]

EMPIAR Experiment type

  • EMDB [2530]
  • FIB-SEM [92]
  • SBF-SEM [47]
  • EXCEPTION [20]
  • SSET [19]
  • CLEM [17]
  • SXT [15]
  • CLXM [11]
  • IHM [6]
  • ATUM-SEM [5]
  • HARD X-RAY/X-RAY MICROCT [5]
  • MICROED [3]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2008]
  • MICROGRAPHS - SINGLE FRAME [581]
  • TILT SERIES [302]
  • RECONSTRUCTED VOLUMES [142]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [125]
  • PICKED PARTICLES - MULTIFRAME - PROCESSED [82]
  • PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [28]
  • PICKED PARTICLES - MULTIFRAME - UNPROCESSED [24]
  • CLASS AVERAGES [14]
  • DIFFRACTION IMAGES [7]
  • SUBTOMOGRAMS [7]
  • STITCHED MAPS [5]
  • PARTICLE PICKING [3]
  • MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [2]
  • ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
  • MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
  • MODEL [1]
  • SOFT X-RAY TOMOGRAMS [1]

External links

  • EMDB [2525]
  • BioImage Archive [28]
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EMPIAR-13315
Related EMDB
EMD-52634
Single Particle cryo-EM dataset of Fab fragment, Fab20, bound to recombinant human CD40 ligand
Release date: March 23, 2026
Dataset size: 2.0 TB
Experiment type: EMDB

Kristoffersen EL, Schinkel T

To Be Published

Image sets:
  • raw micrographs of recombinant human CD40L in complex with Fab fragment (Fab20)
EMPIAR-13124
Related EMDB
EMD-55761
Single particle cryo-EM dataset of mouse heavy chain apoferritin prepared by jet vitrification
Release date: March 22, 2026
Dataset size: 653.8 GB
Experiment type: EMDB

Haubner M, Williams HM, Hruby J, Straub MS, Guskov A, Kovalev K, Drabbels M, Lorenz UJ

To Be Published

Image sets:
  • Raw micrographs of mouse heavy chain apoferritin prepared by jet vitrification
EMPIAR-12167
Related EMDB
EMD-45443
Dissecting human monoclonal antibody responses from mRNA- and protein-based booster vaccinations against XBB.1.5 SARS-CoV-2
Release date: March 20, 2026
Dataset size: 536.7 GB
Experiment type: EMDB

Fantin RF, Clark JJ, Cohn H, Jaiswal D, Bozarth B, Rao V, Civljak A, Lobo I, Nardulli JR, Srivastava K, Yong JS, Andreata-Santos R, Bushfield K, Lee ES, Singh G, Kleinstein SH, Krammer F, Simon V, Bajic G, Coelho CH

The Lancet. Microbe (2025) 6 [ DOI: 10.1016/j.lanmic.2025.101103 Pubmed: 40456237 ]

Image sets:
  • Aligned micrographs of SARS-CoV-2 Hexapro Spike with M39 Fab
EMPIAR-12414
Related EMDB
EMD-47426
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 mAb 52
Release date: March 20, 2026
Dataset size: 600.1 GB
Experiment type: EMDB

Malladi SK, Jaiswal D, Ying B, Alsoussi WB, Darling TL, Dadonaite B, Civljak A, Horvath SC, Zhou JQ, Kim W, Turner JS, Schmitz AJ, Han F, Scheaffer SM, Farnsworth CW, Nachbagauer R, Nestorova B, Chalkias S, Klebert MK, Edwards DK, Paris R, Strnad BS, Middleton WD, O'Halloran JA, Presti RM, Bloom JD, Boon ACM, Diamond MS, Bajic G, Ellebedy AH

Science immunology (2025) 10 [ Pubmed: 41071904 DOI: 10.1126/sciimmunol.adu4107 ]

Image sets:
  • Aligned micrographs of SARS-CoV-2 Hexapro Spike with Fab-52
EMPIAR-13115
Related EMDB
EMD-55034 EMD-55030 EMD-55031 EMD-55033 EMD-55032
Single particle cryo-EM dataset of as-prepared Bos taurus mitochondrial complex I in MSP2N2 nanodiscs treated with NADH
Release date: March 20, 2026
Dataset size: 5.2 TB
Experiment type: EMDB

Chung I, Pereira CS, Wright JJ, Arantes GM, Hirst J

Nat Commun (2026) [ Pubmed: 41786699 DOI: 10.1038/s41467-026-70030-0 ]

Image sets:
  • Unaligned multi-frame micrographs of Bos taurus mitochondrial complex I from an as-prepared sample solubilised in DDM and reconstituted in to MSP2N2 nanodiscs, with 10 micromolar NADH added.
EMPIAR-13132
Related EMDB
EMD-14139 EMD-14140 EMD-14133 EMD-14132 EMD-14134
Single particle cryo-EM dataset of as-prepared Bos taurus mitochondrial complex I (oxidised) in MSP2N2
Release date: March 20, 2026
Dataset size: 3.0 TB
Experiment type: EMDB

Chung I, Wright JJ, Bridges HR, Ivanov BS, Biner O, Pereira CS, Arantes GM, Hirst J

Nat. Commun. (2022) 13 [ Pubmed: 35589726 DOI: 10.1038/s41467-022-30506-1 ]

Image sets:
  • Unaligned multi-frame micrographs of Bos taurus mitochondrial complex I from an as-prepared sample solubilised in DDM and reconstituted in to MSP2N2 nanodiscs.
EMPIAR-13379
Clostridium butyricum Argonaute catalytic mutant in ternary form (bound to guide DNA and target DNA)
Release date: March 20, 2026
Dataset size: 4.7 TB
Experiment type: IHM

Barendse P, van Drimmelen M, Pacesa M, Sivaraman A, Zhang DK, Nickel L, Niault T, Lindhoud S, Roosjen M, Hegge JW, Park K, Correia BE, van der Oost J, Joo C, Westphal AH, Swarts DC

To Be Published

Image sets:
  • Movies of CbAgo catalytic mutant in ternary form, complexed with guide DNA and target DNA, mix of dimers and monomers
EMPIAR-12151
Related EMDB
EMD-45444
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Release date: March 19, 2026
Dataset size: 529.8 GB
Experiment type: EMDB

Civljak AC

To Be Published

Image sets:
  • Aligned micrograhs of SARS-CoV-2 Hexapro Spike with M2 Fab
EMPIAR-12412
Related EMDB
EMD-51784 EMD-51779 EMD-51781 EMD-51778 EMD-51780 EMD-51777 EMD-51783 EMD-51782
Reducing the effects of radiation damage in cryo-EM using liquid helium cooling
Release date: March 19, 2026
Dataset size: 381.8 GB
Experiment type: EMDB

Dickerson JL, Naydenova K, Peet MJ, Wilson H, Nandy B, McMullan G, Morrison R, Russo CJ

To Be Published

Image sets:
  • Raw data and per-frame reconstructions for EMDB 51777 to 51784
EMPIAR-13148
Related EMDB
EMD-48507
Convergent and clonotype-specific mutations in the light chain drive affinity maturation of a public antibody targeting a cryptic epitope on S2 of sarbecoviruses
Release date: March 19, 2026
Dataset size: 1.5 TB
Experiment type: EMDB

Sapse IA, Cohn H, Yoo DK, Tong P, Clark JJ, Bozarth B, Chen Y, Srivastava K, Singh G, Krammer F, Simon V, Wesemann DR, Bajic G, Coelho CH

Cell Rep (2025) 44 [ Pubmed: 40803328 DOI: 10.1016/j.celrep.2025.116122 ]

Image sets:
  • movies of SARS-CoV2 S2-M15 Fab Complex
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Filter By

Current Database

  • EMPIAR [2770]

Current status

  • REL [2770]

Release Date

  • 2026 [158]
  • 2025 [665]
  • 2024 [416]
  • 2023 [402]
  • 2022 [379]
  • 2021 [273]
  • 2020 [210]
  • 2019 [85]
  • 2018 [76]
  • 2017 [38]
  • 2016 [30]
  • 2015 [22]
  • 2014 [12]
  • 2013 [4]

Author by name

  • Chen J [60]
  • Potter CS [59]
  • Carragher B [58]
  • Noble AJ [45]
  • Shapiro L [45]
  • Eng ET [43]
  • Kotecha A [43]
  • Zhang Z [40]
  • Dandey VP [39]
  • Darst SA [38]
  • Drabbels M [38]
  • Lorenz UJ [38]
  • Tan YZ [36]
  • Ranson NA [34]
  • Wei H [34]
  • Nishizawa T [32]
  • Barrass SV [31]
  • Brasch J [31]
  • Beck M [30]
  • Kwong PD [30]
  • Rapp M [30]
  • Chiu W [28]
  • Glatt S [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Fraser JS [27]
  • Harder OF [27]
  • Scheres SHW [27]
  • Seiple IB [27]
  • Cheng Y [26]
  • Campbell EA [25]
  • Danev R [25]
  • Hirst J [25]
  • Hruby J [25]
  • Cheng A [24]
  • Kato T [24]
  • Namba K [24]
  • Des Georges A [24]
  • Murzin AG [23]
  • Nureki O [23]
  • Shi Y [23]
  • Lee Y [22]
  • Steyer AM [22]
  • Bhabha G [21]
  • Butcher SJ [21]
  • Cerutti G [21]
  • Ghetti B [21]
  • Herzik Jr Ma [21]
  • Paulino C [21]
  • Stahlberg H [21]
  • Brohawn SG [20]
  • Clarke OB [20]
  • Kim LY [20]
  • Koziej L [20]
  • Li S [20]
  • Negro CJ [20]
  • Yamashita K [20]
  • Acharya P [19]
  • Chase J [19]
  • Jeruzalmi D [19]
  • Mowry NJ [19]
  • Pacesa M [19]
  • Podobnik M [19]
  • Scapin G [19]
  • Skiniotis G [19]
  • Villa E [19]
  • Garringer HJ [18]
  • Kežar A [18]
  • Makino F [18]
  • Plitzko JM [18]
  • Rheinberger J [18]
  • Vidal R [18]
  • Grant T [17]
  • He Q [17]
  • Jinek M [17]
  • Schwab Y [17]
  • Wang F [17]
  • Zhang K [17]
  • Das R [16]
  • Fändrich M [16]
  • Goedert M [16]
  • Harkiolaki M [16]
  • Huang W [16]
  • Inoue T [16]
  • Koritnik N [16]
  • Lander GC [16]
  • Lee J [16]
  • Liu Y [16]
  • Mahamid J [16]
  • Masiulis S [16]
  • Rice WJ [16]
  • Sawaya MR [16]
  • Schmidt M [16]
  • Zhang W [16]
  • Aricescu AR [15]
  • Arseni D [15]
  • Chirgadze DY [15]
  • Grigorieff N [15]
  • Kounatidis I [15]
  • Kusakizako T [15]

Journal

  • NAT COMMUN [381]
  • BIORXIV [351]
  • NATURE [222]
  • NAT STRUCT MOL BIOL [154]
  • ELIFE [128]
  • PNAS [124]
  • MOL CELL [94]
  • CELL [84]
  • SCI ADV [84]
  • SCIENCE [82]
  • STRUCTURE [55]
  • CELL REP [47]
  • J STRUCT BIOL [43]
  • STRUCTURE (LONDON, ENGLAND : 1993) [43]
  • NAT METHODS [37]
  • COMMUN BIOL [34]
  • EMBO J [31]
  • NUCLEIC ACIDS RES [29]
  • J BIOL CHEM [28]
  • COMMUNICATIONS BIOLOGY [21]
  • SCI REP [18]
  • NAT CELL BIOL [16]
  • NAT MICROBIOL [16]
  • COMMUN. BIOL. [15]
  • IUCRJ [15]
  • NAT CHEM BIOL [15]
  • J STRUCT BIOL X [14]
  • ACTA CRYSTALLOGR D STRUCT BIOL [13]
  • J VIROL [12]
  • NAT PROTOC [12]
  • CELL REPORTS METHODS [11]
  • CELL REP METHODS [10]
  • J AM CHEM SOC [10]
  • J CELL BIOL [10]
  • JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [10]
  • COMMUN CHEM [9]
  • COMMUNICATIONS CHEMISTRY [9]
  • GLIA [9]
  • J MOL BIOL [9]
  • NAT PLANTS [9]
  • EMBO REP [8]
  • J MED CHEM [8]
  • JOURNAL OF MEDICINAL CHEMISTRY [8]
  • BMC BIOL [7]
  • BMC BIOLOGY [7]
  • CELL HOST MICROBE [7]
  • DRUG DISCOV TODAY [7]
  • J MICROSC [7]
  • NAT COMM [7]
  • PLOS PATHOG [7]
  • DIS MODEL MECH [6]
  • PLOS BIOL [6]
  • FRONT MOL BIOSCI [5]
  • GENOME BIOL EVOL [5]
  • IMMUNITY [5]
  • LIFE SCI ALLIANCE [5]
  • MICROSCOPY [5]
  • RESEARCH SQUARE [5]
  • SCI SIGNAL [5]
  • SCIENCE SIGNALING [5]
  • DEV CELL [4]
  • INT J MOL SCI [4]
  • INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [4]
  • METHODS IN CELL BIOLOGY [4]
  • MOL BIOL CELL [4]
  • NAR [4]
  • NATURE CATALYSIS [4]
  • PLOS ONE [4]
  • PNAS NEXUS [4]
  • SCI IMMUNOL [4]
  • SCIENCE IMMUNOLOGY [4]
  • STRUCT. [4]
  • VIRUSES [4]
  • ANGEW CHEM INT ED ENGL [3]
  • ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [3]
  • BIOMOLECULES [3]
  • FRONT MICROBIOL [3]
  • FRONTIERS [3]
  • J BACTERIOL [3]
  • JBC [3]
  • MBIO [3]
  • METH CELL BIOL [3]
  • METHODS IN MICROSCOPY [3]
  • NAT BIOTECHNOL [3]
  • NATURE BIOTECHNOLOGY [3]
  • NEURON [3]
  • NUCLEIC ACID RESEARCH [3]
  • PROG BIOPHYS MOL BIOL [3]
  • SCI ADV. [3]
  • ACS CATALYSIS [2]
  • ADV SCI (WEINH) [2]
  • ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) [2]
  • ANAL CHEM [2]
  • ARXIV [2]
  • BIOCHEM J [2]
  • BIOCHEMISTRY [2]
  • BIOPHYS REV [2]
  • BLOOD [2]
  • CELL REP PHYS SCI [2]
  • CELL REPORTS. PHYSICAL SCIENCE [2]

EMPIAR Experiment type

  • EMDB [2530]
  • FIB-SEM [92]
  • SBF-SEM [47]
  • EXCEPTION [20]
  • SSET [19]
  • CLEM [17]
  • SXT [15]
  • CLXM [11]
  • IHM [6]
  • ATUM-SEM [5]
  • HARD X-RAY/X-RAY MICROCT [5]
  • MICROED [3]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2008]
  • MICROGRAPHS - SINGLE FRAME [581]
  • TILT SERIES [302]
  • RECONSTRUCTED VOLUMES [142]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [125]
  • PICKED PARTICLES - MULTIFRAME - PROCESSED [82]
  • PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [28]
  • PICKED PARTICLES - MULTIFRAME - UNPROCESSED [24]
  • CLASS AVERAGES [14]
  • DIFFRACTION IMAGES [7]
  • SUBTOMOGRAMS [7]
  • STITCHED MAPS [5]
  • PARTICLE PICKING [3]
  • MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [2]
  • ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
  • MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
  • MODEL [1]
  • SOFT X-RAY TOMOGRAMS [1]

External links

  • EMDB [2525]
  • BioImage Archive [28]