Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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Current Database
- EMDB [2850]
Current status
- REL [2850]
Sample type
- Virus [2850]
- Protein [1355]
- Sample [620]
- Ligand [286]
- Complex [113]
- RNA [51]
- DNA [28]
- Cellular component [23]
- Other [15]
- Cell [4]
Organism
- Homo sapiens [153]
- Human immunodeficiency virus 1 [92]
- Severe acute respiratory syndrome coronavirus [64]
- Mus musculus [53]
- Adeno-associated virus [43]
- Enterovirus d [42]
- Hepatitis b virus [38]
- Enterovirus a [37]
- Brome mosaic virus [35]
- Cypovirus 1 [33]
- Chikungunya virus [33]
- Paramecium bursaria chlorella virus 1 [31]
- Mycolicibacterium smegmatis [31]
- Staphylococcus phage 812 [31]
- Mycobacterium phage bxb1 [30]
- Enterovirus c [29]
- Zika virus [29]
- Tobacco mosaic virus [25]
- Enterovirus a [25]
- Pseudomonas phage jbd30 [24]
- Nudaurelia capensis omega virus [23]
- Escherichia virus t7 [22]
- Human mastadenovirus c [22]
- Human herpesvirus 1 [21]
- Escherichia phage ms2 [21]
- Tequintavirus dt57c [21]
- Rice dwarf virus [19]
- Zaire ebolavirus [19]
- Salmonella phage p22 [18]
- Rift valley fever phlebovirus [18]
- Norwalk virus [18]
- Rotavirus a [18]
- Suid alphaherpesvirus 1 [17]
- Pseudomonas phage phi6 [17]
- Eastern equine encephalitis virus [17]
- Enterovirus b [17]
- Escherichia virus t5 [17]
- Human herpesvirus 8 [17]
- Felixounavirus johannrwettstein [16]
- Synthetic construct [16]
- Vaccinia virus [15]
- Human cytomegalovirus [15]
- Epstein-barr virus (strain gd1) [15]
- Mammalian orthoreovirus [15]
- Orthoflavivirus flavi [15]
- Human herpesvirus 3 [14]
- Human cytomegalovirus [14]
- Enterobacteria phage t4 [14]
- Dengue virus [14]
- Staphylococcus phage p68 [14]
- Certrevirus phite [13]
- Indiana vesiculovirus [13]
- Enterovirus b [13]
- Deformed wing virus [13]
- Eastern chimpanzee simian foamy virus [13]
- Enquatrovirus n4 [13]
- Autographa californica multiple nucleopolyhedrovirus [13]
- Epstein-barr virus (strain gd1) [12]
- African swine fever virus [12]
- Rhinovirus b [12]
- Sulfolobus monocaudavirus smv1 [12]
- Escherichia virus qbeta [12]
- Rotavirus a [12]
- Human herpesvirus 1 [11]
- Pseudomonas virus prd1 [11]
- Western equine encephalitis virus [11]
- Measles morbillivirus [11]
- Simian immunodeficiency virus [11]
- Enterovirus b [11]
- Agrobacterium phage milano [11]
- Alphapapillomavirus 9 [11]
- Alphabaculovirus aucalifornicae [11]
- Enterovirus b [11]
- Enterovirus b [10]
- Cowpea chlorotic mottle virus [10]
- Escherichia virus su10 [10]
- Salmonella phage p22 [10]
- Alphapapillomavirus 9 [10]
- Getah virus [10]
- Alphapapillomavirus 9 [9]
- Bluetongue virus [9]
- Schmittlotzvirus sv771 [9]
- Enterovirus c [9]
- Foot-and-mouth disease virus [9]
- Melbournevirus [9]
- Pseudomonas phage phikz [9]
- Influenza a virus [9]
- Escherichia phage lambda [9]
- Norwalk virus [9]
- Recovirus a [9]
- Mammalian orthoreovirus [9]
- Porcine circovirus 2 [9]
- (no species) [8]
- Rotavirus a [8]
- Phimunavirus fm1 [8]
- Dengue virus [8]
- Acinetobacter phage ap205 [8]
- Zika virus [8]
- Macrobrachium rosenbergii nodavirus [8]
- Kehishuvirus primarius [8]
EM Method
- Single-particle [2282]
- Subtomogram averaging [352]
- Tomography [119]
- Helical reconstruction [96]
- Electron Crystallography [1]
Resolution
- < 2Å [15]
- ≥ 2Å and < 3Å [340]
- ≥ 3Å and < 4Å [860]
- ≥ 4Å and < 5Å [319]
- ≥ 5Å and < 6Å [75]
- ≥ 6Å and < 8Å [202]
- ≥ 8Å and < 12Å [338]
- ≥ 12Å and < 16Å [152]
- ≥ 16Å and < 20Å [102]
- ≥ 20Å and < 30Å [185]
- ≥ 30Å [109]
Model molecular weight
- 0-50 kDa [22]
- 50-100 kDa [32]
- 100-250 kDa [107]
- 250-500 kDa [138]
- 500-1000 kDa [100]
- 1-2 MDa [137]
- 2-5 MDa [203]
- 5-10 MDa [303]
- > 10 MDa [286]
Release Date
- 2025 [379]
- 2024 [398]
- 2023 [296]
- 2022 [224]
- 2021 [188]
- 2020 [232]
- 2019 [205]
- 2018 [139]
- 2017 [105]
- 2016 [129]
- 2015 [74]
- 2014 [64]
- 2013 [94]
- 2012 [72]
- 2011 [37]
- 2010 [46]
- 2009 [56]
- 2008 [14]
- 2007 [48]
- 2006 [17]
- 2005 [21]
- 2004 [4]
- 2003 [4]
- 2002 [4]
Author by name
- Zhou ZH [230]
- Rossmann MG [169]
- Plevka P [153]
- Fuzik T [120]
- Li S [116]
- Huiskonen JT [111]
- Chiu W [109]
- Klose T [101]
- Zhang X [98]
- Zhang J [97]
- Conway JF [92]
- Novacek J [90]
- Cui Y [87]
- Wang X [85]
- Liu H [84]
- Jacobs-sera D [83]
- Jiang W [81]
- Li Z [80]
- Liu Y [77]
- Zhang Y [73]
- Butcher SJ [72]
- Kuhn RJ [72]
- Zhao X [70]
- Briggs JAG [69]
- Hatfull GF [68]
- Liu X [68]
- Freeman KG [67]
- Liu S [67]
- Chen Z [66]
- Chipman P [65]
- Ho MC [65]
- Lowary TL [65]
- Macale LS [65]
- Mckenna R [65]
- Perez RJ [65]
- Liu J [63]
- Chen W [62]
- Fang Q [62]
- Krausslich HG [61]
- Mietzsch M [60]
- Wang J [60]
- Yu H [58]
- Huet A [57]
- Wolf M [57]
- Zheng Q [57]
- Stuart DI [56]
- Wang Y [56]
- Murata K [55]
- Xia N [55]
- Bostina M [53]
- Cui YX [53]
- Huang Y [53]
- Shao Q [53]
- Liu C [52]
- Liu W [52]
- Ayala R [51]
- Xiao H [51]
- Wang P [50]
- Cheng L [49]
- Jakana J [49]
- Wang A [49]
- Hafenstein S [48]
- Kotecha A [48]
- White SJ [48]
- Yu X [48]
- Baker TS [47]
- Ranson NA [47]
- He M [46]
- Li Y [46]
- Schmid MF [45]
- Liu Z [44]
- Rao Z [44]
- Zhang Q [44]
- Glass B [43]
- Hrebik D [43]
- Gao GF [42]
- Hodgkinson-bean J [42]
- Schoehn G [42]
- Siborova M [41]
- Liu HR [40]
- Wang F [40]
- Dai X [39]
- Gu Y [39]
- Li L [39]
- Que Y [39]
- Rosenthal PB [39]
- Sun R [39]
- Benesik M [38]
- Chipman PR [38]
- Qi J [38]
- Wang CH [38]
- Bamford DH [37]
- Pantucek R [37]
- Peng R [37]
- Rutter GL [37]
- Chen Y [36]
- Effantin G [36]
- Egelman EH [36]
- Skubnik K [36]
- Song J [36]
Author by ORCID
- Plevka P [151]
- Zhou ZH [143]
- Fuzik T [119]
- Huiskonen JT [110]
- Chiu W [97]
- Conway JF [90]
- Novacek J [72]
- Jiang W [70]
- Butcher SJ [68]
- Klose T [67]
- Cui Y [66]
- Chipman P [61]
- Briggs JAG [58]
- Mietzsch M [55]
- Zheng Q [54]
- Bostina M [53]
- Mckenna R [52]
- Wolf M [51]
- Ayala R [51]
- Xiao H [49]
- Kotecha A [48]
- Ranson NA [46]
- Li S [45]
- Baker TS [44]
- Krausslich HG [44]
- Xia N [44]
- Hrebik D [42]
- Siborova M [41]
- Hodgkinson-bean J [39]
- Dai X [39]
- Benesik M [38]
- Chipman PR [38]
- Peng R [37]
- Pantucek R [37]
- Rutter GL [37]
- Murata K [36]
- Schoehn G [36]
- Wang F [36]
- Liao YT [35]
- Schmid MF [35]
- Maharana J [35]
- Franklin A [35]
- Effantin G [34]
- Li S [34]
- Shao Q [33]
- Mattei S [33]
- Stuart DI [33]
- Gao GF [33]
- Xia X [32]
- Lee H [32]
- Bamford DH [32]
- Ke Z [32]
- Fang Q [32]
- Kuhn RJ [32]
- Hagen WJ [31]
- Zhang J [31]
- Qi J [31]
- Zheng J [31]
- Mondal S [30]
- Coulibaly F [30]
- Briggs JA [30]
- Jih J [29]
- Krupovic M [29]
- Domanska A [29]
- Guo M [29]
- Ilca SL [29]
- Wang A [29]
- Zhao X [29]
- Lok SM [29]
- Bi GQ [28]
- Dunigan DD [28]
- Zhu R [28]
- Bottcher B [28]
- Luque D [27]
- Skubnik K [27]
- Calcraft T [27]
- Leiman PG [27]
- Kostyuchenko VA [26]
- Zhu D [26]
- Pridal A [26]
- Cheng L [26]
- Sokolova OS [26]
- Cheng T [25]
- Van Etten Jl [25]
- Filman DJ [25]
- Liu Y [25]
- Noel EA [25]
- Agarkova IV [25]
- Crowe AJM [25]
- Mcjarrow-keller K [25]
- Chakravarty A [24]
- Watterson D [24]
- Liu W [24]
- Beren C [24]
- Song H [24]
- Hogle JM [24]
- Rao ALN [24]
- Newton ND [24]
- Pospisil J [24]
- Valentova L [24]
Journal
- NAT COMMUN [443]
- PNAS [308]
- J VIROL [304]
- TO BE PUBLISHED [269]
- SCI ADV [135]
- CELL [124]
- STRUCTURE [122]
- J MOL BIOL [100]
- PLOS PATHOG [99]
- NATURE [77]
- COMMUN BIOL [68]
- SCIENCE [62]
- NAT STRUCT MOL BIOL [57]
- EMBO J [56]
- J STRUCT BIOL [55]
- BIORXIV [53]
- VIRUSES [52]
- NAT MICROBIOL [42]
- CELL REP [39]
- PLOS BIOL [31]
- VIROLOGY [31]
- ELIFE [30]
- CELL HOST MICROBE [25]
- SCI REP [24]
- MBIO [19]
- PROTEIN CELL [15]
- CELL DISCOV [13]
- J MED CHEM [12]
- PNAS NEXUS [12]
- INT J MOL SCI [11]
- J GEN VIROL [11]
- RES SQ [11]
- CHIN SCI BULL [10]
- NUCLEIC ACIDS RES [10]
- ACTA CRYSTALLOGR D STRUCT BIOL [9]
- MICROORGANISMS [9]
- CELL RES [8]
- HLIFE [8]
- NANOSCALE [8]
- NAT METHODS [8]
- PLOS ONE [8]
- J BIOL CHEM [7]
- PROTEIN SCI [7]
- BIOMOLECULES [6]
- FRONT IMMUNOL [5]
- MOL THER [5]
- MOL THER METHODS CLIN DEV [5]
- NATL SCI REV [5]
- SCI TRANSL MED [5]
- CELL MICROBIOL [4]
- MICROSC MICROANAL [4]
- NPJ DRUG DISCOV [4]
- SCI BULL (BEIJING) [4]
- SMALL [4]
- BIOCHIM BIOPHYS ACTA [3]
- BIOPHYS J [3]
- ENVIRON SCI TECHNOL. [3]
- IUCRJ [3]
- ULTRAMICROSCOPY [3]
- ACS NANO [2]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [2]
- CLIN VACCINE IMMUNOL [2]
- COMPUT STRUCT BIOTECHNOL J [2]
- EMBO REP [2]
- EMERG MICROBES INFECT [2]
- ENVIRON SCI TECHNOL [2]
- J IMMUNOL [2]
- MICROLIFE [2]
- MOL CELL [2]
- MOL MICROBIOL [2]
- NPJ VIRUSES [2]
- PATHOG IMMUN [2]
- RNA [2]
- SCI IMMUNOL [2]
- VIROL J [2]
- BIOTECHNOL REP [1]
- DIAN ZI XIAN WEI XUE BAO [1]
- EBIOMEDICINE [1]
- EMBO MOL MED [1]
- FRONT MICROBIOL [1]
- HUM GENE THER [1]
- ISCIENCE [1]
- J BIOCHEM [1]
- J CLIN INV [1]
- J VIROL METHODS [1]
- J VIS EXP [1]
- MICROB BIOTECHNOL [1]
- MSPHERE [1]
- NAT IMMUNOL [1]
- NAT MED [1]
- NOT PUBLISHED [1]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [1]
- VIRUS RES [1]
Software
- RELION [857]
- CTFFIND [186]
- CRYOSPARC [176]
- JSPR [115]
- IMOD [86]
- AUTO3DEM [73]
- EMAN [56]
- CHIMERA [51]
- GCTF [51]
- EMAN2 [49]
- CISTEM [46]
- DYNAMO [42]
- AV3 [39]
- FREALIGN [38]
- TOM TOOLBOX [38]
- SPIDER [35]
- MATLAB [28]
- EMFIT [27]
- NOVACTF [26]
- CTFPHASEFLIP [25]
- PEET [25]
- ETOMO [22]
- IMIRS [22]
- J3DR [21]
- MPSA [20]
- EM3DR2 [19]
- JALIGN [19]
- WARP [19]
- XMIPP [19]
- IMAGIC [17]
- MULTI-PATH SA [16]
- SPRING [14]
- PROTOMO [13]
- IMOD, DYNAMO [12]
- MRC [12]
- BSOFT [11]
- EMAN2, SPIDER, XMIPP [10]
- TOM [10]
- NOVASTA [9]
- CTFFIND3 [8]
- EMAN, EMAN2, MPSA [8]
- UCSF CHIMERA [8]
- AMIRAFPM [7]
- EMCLARITY [7]
- PFT2, EM3DR2 [7]
- PFT2, EM3DR2, POR, P3DR [7]
- PHENIX [7]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PROTOMO, I3, EMAN [6]
- SAVR [6]
- CHIMERA, SITUS [5]
- COOT, SPDBV, REFMAC5 [5]
- CRYOLO [5]
- EMAN, FREALIGN [5]
- MPSA, EMAN, EMAN2 [5]
- PFT [5]
- PFT2 AND EM3DR2 [5]
- SITUS [5]
- URO [5]
- AMIRA [4]
- EMAN, IMAGIC, SPIDER [4]
- EMBL, P3DR [4]
- EMPFT EM3DR [4]
- IMOD AND BSOFT [4]
- IMOD, RAPTOR, PROTOMO [4]
- PRIISM/IVE [4]
- SCIPION [4]
- SPIDER, EMAN [4]
- CHIMERA, NAMD/MDFF [3]
- COOT [3]
- EMAN, MPSA [3]
- EMAN, SPIDER [3]
- FOLDHUNTER [3]
- I3 [3]
- IHRSR [3]
- IMIRS, EMAN1 [3]
- IMOD, EMAN, EMAN2, TOMOHUNTER [3]
- IMOD, XMIPP, TOMO3D [3]
- JSPR, EMAN, EMAN2 [3]
- JSPR, EMAN2, EMAN [3]
- P3DR [3]
- PFT2 EM3DR2 [3]
- SPIDER, XMIPP [3]
- SPIDER,XMIPP [3]
- STOPGAP [3]
- AUTO3DEM V3.13 [2]
- AUTO3DEM, CTFFIND3 [2]
- AUTO3DEM, RELION, EMAN2 [2]
- AUTO3DEM, ROBEM, AUTOPP [2]
- CHARMM [2]
- CHIMERA, COOT, NAMD/MDFF [2]
- CHIMERA, SEGGER [2]
- CNSSOLVE [2]
- EM3DR [2]
- EM3DR2, PFT2, CTFMIX [2]
- EMAN, AUTO3DEM [2]
- EMAN1/2 [2]
- EMBL-ICOS [2]
- EMBL-ICOS, MRC [2]
Microscope
- FEI TITAN KRIOS [1480]
- TFS KRIOS [345]
- FEI POLARA 300 [169]
- FEI TECNAI F20 [160]
- FEI TECNAI F30 [104]
- JEOL 2200FS [73]
- FEI TALOS ARCTICA [67]
- FEI/PHILIPS CM300FEG/T [63]
- FEI/PHILIPS CM200FEG [49]
- FEI TECNAI ARCTICA [44]
- JEOL 3200FSC [44]
- JEOL CRYO ARM 300 [33]
- TFS GLACIOS [26]
- FEI TITAN [22]
- FEI TECNAI 20 [20]
- JEOL 4000 [17]
- JEOL 3200FS [15]
- FEI/PHILIPS CM120T [14]
- FEI/PHILIPS CM200T [12]
- JEOL 2010F [10]
- FEI TECNAI 12 [9]
- JEOL 2100 [9]
- JEOL 2200FSC [9]
- TFS TALOS [8]
- TFS TALOS F200C [8]
- FEI TECNAI SPIRIT [7]
- FEI/PHILIPS CM200FEG/ST [6]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 3000SFF [5]
- FEI/PHILIPS CM300FEG/HE [3]
- JEOL 1000EES [3]
- JEOL 1200EXII [3]
- FEI TECNAI SPHERA [2]
- JEOL 1200 [2]
- JEOL 4000EX [2]
- OTHER [2]
- ZEISS LIBRA120PLUS [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS EM400 [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- JEOL 2100F [1]
- JEOL CRYO ARM 200 [1]
Electron Source
- FIELD EMISSION GUN [2747]
- LAB6 [78]
- TUNGSTEN HAIRPIN [19]
- OTHER [6]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [580]
- GATAN K3 6K X 4K [377]
- FEI FALCON III 4K X 4K [316]
- KODAK SO-163 FILM [269]
- GATAN K3 BIOQUANTUM 6K X 4K [245]
- FEI FALCON II 4K X 4K [218]
- GATAN K2 QUANTUM 4K X 4K [157]
- FEI FALCON IV 4K X 4K [148]
- GATAN ULTRASCAN 4000 4K X 4K [118]
- DIRECT ELECTRON DE-20 5K X 3K [45]
- GENERIC CCD [34]
- GATAN K2 4K X 4K [25]
- TFS FALCON 4I 4K X 4K [25]
- GENERIC TVIPS 4K X 4K [22]
- OTHER [22]
- FEI EAGLE 4K X 4K [21]
- TVIPS TEMCAM-F415 4K X 4K [20]
- GATAN K2 BASE 4K X 4K [19]
- TVIPS TEMCAM-F416 4K X 4K [16]
- TVIPS TEMCAM-F224 2K X 2K [15]
- DIRECT ELECTRON DE-64 8K X 8K [13]
- GATAN K3 BIOCONTINUUM 6K X 4K [11]
- GENERIC GATAN 4K X 4K [9]
- DIRECT ELECTRON DE-16 4K X 4K [8]
- FEI FALCON I 4K X 4K [8]
- FEI EAGLE 2K X 2K [7]
- DIRECT ELECTRON DE-12 4K X 3K [6]
- GATAN ULTRASCAN 1000 2K X 2K [6]
- GATAN MULTISCAN [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC GATAN [5]
- GENERIC TVIPS [5]
- AGFA SCIENTA FILM [4]
- DECTRIS ARINA 0.2K X 0.2K [4]
- GATAN ULTRASCAN 10000 10K X 10K [4]
- DECTRIS ELA 1K X 0.5K [3]
- GATAN K2 IS 4K X 4K [3]
- GENERIC FILM [2]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- KODAK 4489 FILM [1]
External links
- PDB [1340]
- UniProt [1109]
- PDBe-Kb [908]
- Pfam [780]
- InterPro [765]
- Gene Ontology [687]
- ChEBI [268]
- ChEMBL [196]
- DrugBank [179]
- EMPIAR [156]
- AlphaFold DB [129]
- CATH [52]
- SCOP2 [45]
- Complex Portal [19]
Release date: Dec. 31, 2025
Resolution: 3.11 Å
EM Method: Single-particle
Resolution: 3.11 Å
EM Method: Single-particle
Liang SJ, Lou ZY
To Be Published
Fokine A, Zhu J, Klose T, Vago F, Arnaud C, Wang Z, Khare B, Rossmann MG, Chen Z, Sun L, Fang Q, Kuhn R, Rao VB
To Be Published
Release date: Dec. 24, 2025
Resolution: 7.82 Å
EM Method: Subtomogram averaging
Resolution: 7.82 Å
EM Method: Subtomogram averaging
Arndt WG, Ramezani A, Talledge N, Yu G, Yang H, Chen B, Perilla JR, Zhang W, Mansky LM
Nat Commun (2025) [ Pubmed: 41381513 DOI: doi:10.1038/s41467-025-67129-1 ]
Release date: Dec. 24, 2025
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9n0w
Q-score: 0.367
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9n0w
Q-score: 0.367
Arndt WG, Ramezani A, Talledge N, Yu G, Yang H, Chen B, Perilla JR, Zhang W, Mansky LM
Nat Commun (2025) [ Pubmed: 41381513 DOI: doi:10.1038/s41467-025-67129-1 ]
Xu KE, Chen YT
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 9kr4
Q-score: 0.684
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 9kr4
Q-score: 0.684
Tang L, Cao S, Chen Q, Zhong C, Wang F, Liu Z, Zhang X, Ke C
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 9uea
Q-score: 0.55
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 9uea
Q-score: 0.55
Wang X, Lin Z
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9ueb
Q-score: 0.596
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9ueb
Q-score: 0.596
Wang X, Lin Z
To Be Published
Release date: Dec. 24, 2025
Resolution: 2.93 Å
EM Method: Single-particle
Resolution: 2.93 Å
EM Method: Single-particle
Hu Z, SunKang Y, Liu Z, Huang L, Qi W, Yan R
iScience (2025) 28 pp. 114155- [ DOI: doi:10.1016/j.isci.2025.114155 ]
Release date: Dec. 24, 2025
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Huang QJ, McDaniel CN, Griffith AA, Schiffer CA, Somasundaran M
J Vis Exp (2025) [ DOI: doi:10.3791/68636 Pubmed: 41284633 ]
Filter By
Current Database
- EMDB [2850]
Current status
- REL [2850]
Sample type
- Virus [2850]
- Protein [1355]
- Sample [620]
- Ligand [286]
- Complex [113]
- RNA [51]
- DNA [28]
- Cellular component [23]
- Other [15]
- Cell [4]
Organism
- Homo sapiens [153]
- Human immunodeficiency virus 1 [92]
- Severe acute respiratory syndrome coronavirus [64]
- Mus musculus [53]
- Adeno-associated virus [43]
- Enterovirus d [42]
- Hepatitis b virus [38]
- Enterovirus a [37]
- Brome mosaic virus [35]
- Cypovirus 1 [33]
- Chikungunya virus [33]
- Paramecium bursaria chlorella virus 1 [31]
- Mycolicibacterium smegmatis [31]
- Staphylococcus phage 812 [31]
- Mycobacterium phage bxb1 [30]
- Enterovirus c [29]
- Zika virus [29]
- Tobacco mosaic virus [25]
- Enterovirus a [25]
- Pseudomonas phage jbd30 [24]
- Nudaurelia capensis omega virus [23]
- Escherichia virus t7 [22]
- Human mastadenovirus c [22]
- Human herpesvirus 1 [21]
- Escherichia phage ms2 [21]
- Tequintavirus dt57c [21]
- Rice dwarf virus [19]
- Zaire ebolavirus [19]
- Salmonella phage p22 [18]
- Rift valley fever phlebovirus [18]
- Norwalk virus [18]
- Rotavirus a [18]
- Suid alphaherpesvirus 1 [17]
- Pseudomonas phage phi6 [17]
- Eastern equine encephalitis virus [17]
- Enterovirus b [17]
- Escherichia virus t5 [17]
- Human herpesvirus 8 [17]
- Felixounavirus johannrwettstein [16]
- Synthetic construct [16]
- Vaccinia virus [15]
- Human cytomegalovirus [15]
- Epstein-barr virus (strain gd1) [15]
- Mammalian orthoreovirus [15]
- Orthoflavivirus flavi [15]
- Human herpesvirus 3 [14]
- Human cytomegalovirus [14]
- Enterobacteria phage t4 [14]
- Dengue virus [14]
- Staphylococcus phage p68 [14]
- Certrevirus phite [13]
- Indiana vesiculovirus [13]
- Enterovirus b [13]
- Deformed wing virus [13]
- Eastern chimpanzee simian foamy virus [13]
- Enquatrovirus n4 [13]
- Autographa californica multiple nucleopolyhedrovirus [13]
- Epstein-barr virus (strain gd1) [12]
- African swine fever virus [12]
- Rhinovirus b [12]
- Sulfolobus monocaudavirus smv1 [12]
- Escherichia virus qbeta [12]
- Rotavirus a [12]
- Human herpesvirus 1 [11]
- Pseudomonas virus prd1 [11]
- Western equine encephalitis virus [11]
- Measles morbillivirus [11]
- Simian immunodeficiency virus [11]
- Enterovirus b [11]
- Agrobacterium phage milano [11]
- Alphapapillomavirus 9 [11]
- Alphabaculovirus aucalifornicae [11]
- Enterovirus b [11]
- Enterovirus b [10]
- Cowpea chlorotic mottle virus [10]
- Escherichia virus su10 [10]
- Salmonella phage p22 [10]
- Alphapapillomavirus 9 [10]
- Getah virus [10]
- Alphapapillomavirus 9 [9]
- Bluetongue virus [9]
- Schmittlotzvirus sv771 [9]
- Enterovirus c [9]
- Foot-and-mouth disease virus [9]
- Melbournevirus [9]
- Pseudomonas phage phikz [9]
- Influenza a virus [9]
- Escherichia phage lambda [9]
- Norwalk virus [9]
- Recovirus a [9]
- Mammalian orthoreovirus [9]
- Porcine circovirus 2 [9]
- (no species) [8]
- Rotavirus a [8]
- Phimunavirus fm1 [8]
- Dengue virus [8]
- Acinetobacter phage ap205 [8]
- Zika virus [8]
- Macrobrachium rosenbergii nodavirus [8]
- Kehishuvirus primarius [8]
EM Method
- Single-particle [2282]
- Subtomogram averaging [352]
- Tomography [119]
- Helical reconstruction [96]
- Electron Crystallography [1]
Resolution
- < 2Å [15]
- ≥ 2Å and < 3Å [340]
- ≥ 3Å and < 4Å [860]
- ≥ 4Å and < 5Å [319]
- ≥ 5Å and < 6Å [75]
- ≥ 6Å and < 8Å [202]
- ≥ 8Å and < 12Å [338]
- ≥ 12Å and < 16Å [152]
- ≥ 16Å and < 20Å [102]
- ≥ 20Å and < 30Å [185]
- ≥ 30Å [109]
Model molecular weight
- 0-50 kDa [22]
- 50-100 kDa [32]
- 100-250 kDa [107]
- 250-500 kDa [138]
- 500-1000 kDa [100]
- 1-2 MDa [137]
- 2-5 MDa [203]
- 5-10 MDa [303]
- > 10 MDa [286]
Release Date
- 2025 [379]
- 2024 [398]
- 2023 [296]
- 2022 [224]
- 2021 [188]
- 2020 [232]
- 2019 [205]
- 2018 [139]
- 2017 [105]
- 2016 [129]
- 2015 [74]
- 2014 [64]
- 2013 [94]
- 2012 [72]
- 2011 [37]
- 2010 [46]
- 2009 [56]
- 2008 [14]
- 2007 [48]
- 2006 [17]
- 2005 [21]
- 2004 [4]
- 2003 [4]
- 2002 [4]
Author by name
- Zhou ZH [230]
- Rossmann MG [169]
- Plevka P [153]
- Fuzik T [120]
- Li S [116]
- Huiskonen JT [111]
- Chiu W [109]
- Klose T [101]
- Zhang X [98]
- Zhang J [97]
- Conway JF [92]
- Novacek J [90]
- Cui Y [87]
- Wang X [85]
- Liu H [84]
- Jacobs-sera D [83]
- Jiang W [81]
- Li Z [80]
- Liu Y [77]
- Zhang Y [73]
- Butcher SJ [72]
- Kuhn RJ [72]
- Zhao X [70]
- Briggs JAG [69]
- Hatfull GF [68]
- Liu X [68]
- Freeman KG [67]
- Liu S [67]
- Chen Z [66]
- Chipman P [65]
- Ho MC [65]
- Lowary TL [65]
- Macale LS [65]
- Mckenna R [65]
- Perez RJ [65]
- Liu J [63]
- Chen W [62]
- Fang Q [62]
- Krausslich HG [61]
- Mietzsch M [60]
- Wang J [60]
- Yu H [58]
- Huet A [57]
- Wolf M [57]
- Zheng Q [57]
- Stuart DI [56]
- Wang Y [56]
- Murata K [55]
- Xia N [55]
- Bostina M [53]
- Cui YX [53]
- Huang Y [53]
- Shao Q [53]
- Liu C [52]
- Liu W [52]
- Ayala R [51]
- Xiao H [51]
- Wang P [50]
- Cheng L [49]
- Jakana J [49]
- Wang A [49]
- Hafenstein S [48]
- Kotecha A [48]
- White SJ [48]
- Yu X [48]
- Baker TS [47]
- Ranson NA [47]
- He M [46]
- Li Y [46]
- Schmid MF [45]
- Liu Z [44]
- Rao Z [44]
- Zhang Q [44]
- Glass B [43]
- Hrebik D [43]
- Gao GF [42]
- Hodgkinson-bean J [42]
- Schoehn G [42]
- Siborova M [41]
- Liu HR [40]
- Wang F [40]
- Dai X [39]
- Gu Y [39]
- Li L [39]
- Que Y [39]
- Rosenthal PB [39]
- Sun R [39]
- Benesik M [38]
- Chipman PR [38]
- Qi J [38]
- Wang CH [38]
- Bamford DH [37]
- Pantucek R [37]
- Peng R [37]
- Rutter GL [37]
- Chen Y [36]
- Effantin G [36]
- Egelman EH [36]
- Skubnik K [36]
- Song J [36]
Author by ORCID
- Plevka P [151]
- Zhou ZH [143]
- Fuzik T [119]
- Huiskonen JT [110]
- Chiu W [97]
- Conway JF [90]
- Novacek J [72]
- Jiang W [70]
- Butcher SJ [68]
- Klose T [67]
- Cui Y [66]
- Chipman P [61]
- Briggs JAG [58]
- Mietzsch M [55]
- Zheng Q [54]
- Bostina M [53]
- Mckenna R [52]
- Wolf M [51]
- Ayala R [51]
- Xiao H [49]
- Kotecha A [48]
- Ranson NA [46]
- Li S [45]
- Baker TS [44]
- Krausslich HG [44]
- Xia N [44]
- Hrebik D [42]
- Siborova M [41]
- Hodgkinson-bean J [39]
- Dai X [39]
- Benesik M [38]
- Chipman PR [38]
- Peng R [37]
- Pantucek R [37]
- Rutter GL [37]
- Murata K [36]
- Schoehn G [36]
- Wang F [36]
- Liao YT [35]
- Schmid MF [35]
- Maharana J [35]
- Franklin A [35]
- Effantin G [34]
- Li S [34]
- Shao Q [33]
- Mattei S [33]
- Stuart DI [33]
- Gao GF [33]
- Xia X [32]
- Lee H [32]
- Bamford DH [32]
- Ke Z [32]
- Fang Q [32]
- Kuhn RJ [32]
- Hagen WJ [31]
- Zhang J [31]
- Qi J [31]
- Zheng J [31]
- Mondal S [30]
- Coulibaly F [30]
- Briggs JA [30]
- Jih J [29]
- Krupovic M [29]
- Domanska A [29]
- Guo M [29]
- Ilca SL [29]
- Wang A [29]
- Zhao X [29]
- Lok SM [29]
- Bi GQ [28]
- Dunigan DD [28]
- Zhu R [28]
- Bottcher B [28]
- Luque D [27]
- Skubnik K [27]
- Calcraft T [27]
- Leiman PG [27]
- Kostyuchenko VA [26]
- Zhu D [26]
- Pridal A [26]
- Cheng L [26]
- Sokolova OS [26]
- Cheng T [25]
- Van Etten Jl [25]
- Filman DJ [25]
- Liu Y [25]
- Noel EA [25]
- Agarkova IV [25]
- Crowe AJM [25]
- Mcjarrow-keller K [25]
- Chakravarty A [24]
- Watterson D [24]
- Liu W [24]
- Beren C [24]
- Song H [24]
- Hogle JM [24]
- Rao ALN [24]
- Newton ND [24]
- Pospisil J [24]
- Valentova L [24]
Journal
- NAT COMMUN [443]
- PNAS [308]
- J VIROL [304]
- TO BE PUBLISHED [269]
- SCI ADV [135]
- CELL [124]
- STRUCTURE [122]
- J MOL BIOL [100]
- PLOS PATHOG [99]
- NATURE [77]
- COMMUN BIOL [68]
- SCIENCE [62]
- NAT STRUCT MOL BIOL [57]
- EMBO J [56]
- J STRUCT BIOL [55]
- BIORXIV [53]
- VIRUSES [52]
- NAT MICROBIOL [42]
- CELL REP [39]
- PLOS BIOL [31]
- VIROLOGY [31]
- ELIFE [30]
- CELL HOST MICROBE [25]
- SCI REP [24]
- MBIO [19]
- PROTEIN CELL [15]
- CELL DISCOV [13]
- J MED CHEM [12]
- PNAS NEXUS [12]
- INT J MOL SCI [11]
- J GEN VIROL [11]
- RES SQ [11]
- CHIN SCI BULL [10]
- NUCLEIC ACIDS RES [10]
- ACTA CRYSTALLOGR D STRUCT BIOL [9]
- MICROORGANISMS [9]
- CELL RES [8]
- HLIFE [8]
- NANOSCALE [8]
- NAT METHODS [8]
- PLOS ONE [8]
- J BIOL CHEM [7]
- PROTEIN SCI [7]
- BIOMOLECULES [6]
- FRONT IMMUNOL [5]
- MOL THER [5]
- MOL THER METHODS CLIN DEV [5]
- NATL SCI REV [5]
- SCI TRANSL MED [5]
- CELL MICROBIOL [4]
- MICROSC MICROANAL [4]
- NPJ DRUG DISCOV [4]
- SCI BULL (BEIJING) [4]
- SMALL [4]
- BIOCHIM BIOPHYS ACTA [3]
- BIOPHYS J [3]
- ENVIRON SCI TECHNOL. [3]
- IUCRJ [3]
- ULTRAMICROSCOPY [3]
- ACS NANO [2]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [2]
- CLIN VACCINE IMMUNOL [2]
- COMPUT STRUCT BIOTECHNOL J [2]
- EMBO REP [2]
- EMERG MICROBES INFECT [2]
- ENVIRON SCI TECHNOL [2]
- J IMMUNOL [2]
- MICROLIFE [2]
- MOL CELL [2]
- MOL MICROBIOL [2]
- NPJ VIRUSES [2]
- PATHOG IMMUN [2]
- RNA [2]
- SCI IMMUNOL [2]
- VIROL J [2]
- BIOTECHNOL REP [1]
- DIAN ZI XIAN WEI XUE BAO [1]
- EBIOMEDICINE [1]
- EMBO MOL MED [1]
- FRONT MICROBIOL [1]
- HUM GENE THER [1]
- ISCIENCE [1]
- J BIOCHEM [1]
- J CLIN INV [1]
- J VIROL METHODS [1]
- J VIS EXP [1]
- MICROB BIOTECHNOL [1]
- MSPHERE [1]
- NAT IMMUNOL [1]
- NAT MED [1]
- NOT PUBLISHED [1]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [1]
- VIRUS RES [1]
Software
- RELION [857]
- CTFFIND [186]
- CRYOSPARC [176]
- JSPR [115]
- IMOD [86]
- AUTO3DEM [73]
- EMAN [56]
- CHIMERA [51]
- GCTF [51]
- EMAN2 [49]
- CISTEM [46]
- DYNAMO [42]
- AV3 [39]
- FREALIGN [38]
- TOM TOOLBOX [38]
- SPIDER [35]
- MATLAB [28]
- EMFIT [27]
- NOVACTF [26]
- CTFPHASEFLIP [25]
- PEET [25]
- ETOMO [22]
- IMIRS [22]
- J3DR [21]
- MPSA [20]
- EM3DR2 [19]
- JALIGN [19]
- WARP [19]
- XMIPP [19]
- IMAGIC [17]
- MULTI-PATH SA [16]
- SPRING [14]
- PROTOMO [13]
- IMOD, DYNAMO [12]
- MRC [12]
- BSOFT [11]
- EMAN2, SPIDER, XMIPP [10]
- TOM [10]
- NOVASTA [9]
- CTFFIND3 [8]
- EMAN, EMAN2, MPSA [8]
- UCSF CHIMERA [8]
- AMIRAFPM [7]
- EMCLARITY [7]
- PFT2, EM3DR2 [7]
- PFT2, EM3DR2, POR, P3DR [7]
- PHENIX [7]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PROTOMO, I3, EMAN [6]
- SAVR [6]
- CHIMERA, SITUS [5]
- COOT, SPDBV, REFMAC5 [5]
- CRYOLO [5]
- EMAN, FREALIGN [5]
- MPSA, EMAN, EMAN2 [5]
- PFT [5]
- PFT2 AND EM3DR2 [5]
- SITUS [5]
- URO [5]
- AMIRA [4]
- EMAN, IMAGIC, SPIDER [4]
- EMBL, P3DR [4]
- EMPFT EM3DR [4]
- IMOD AND BSOFT [4]
- IMOD, RAPTOR, PROTOMO [4]
- PRIISM/IVE [4]
- SCIPION [4]
- SPIDER, EMAN [4]
- CHIMERA, NAMD/MDFF [3]
- COOT [3]
- EMAN, MPSA [3]
- EMAN, SPIDER [3]
- FOLDHUNTER [3]
- I3 [3]
- IHRSR [3]
- IMIRS, EMAN1 [3]
- IMOD, EMAN, EMAN2, TOMOHUNTER [3]
- IMOD, XMIPP, TOMO3D [3]
- JSPR, EMAN, EMAN2 [3]
- JSPR, EMAN2, EMAN [3]
- P3DR [3]
- PFT2 EM3DR2 [3]
- SPIDER, XMIPP [3]
- SPIDER,XMIPP [3]
- STOPGAP [3]
- AUTO3DEM V3.13 [2]
- AUTO3DEM, CTFFIND3 [2]
- AUTO3DEM, RELION, EMAN2 [2]
- AUTO3DEM, ROBEM, AUTOPP [2]
- CHARMM [2]
- CHIMERA, COOT, NAMD/MDFF [2]
- CHIMERA, SEGGER [2]
- CNSSOLVE [2]
- EM3DR [2]
- EM3DR2, PFT2, CTFMIX [2]
- EMAN, AUTO3DEM [2]
- EMAN1/2 [2]
- EMBL-ICOS [2]
- EMBL-ICOS, MRC [2]
Microscope
- FEI TITAN KRIOS [1480]
- TFS KRIOS [345]
- FEI POLARA 300 [169]
- FEI TECNAI F20 [160]
- FEI TECNAI F30 [104]
- JEOL 2200FS [73]
- FEI TALOS ARCTICA [67]
- FEI/PHILIPS CM300FEG/T [63]
- FEI/PHILIPS CM200FEG [49]
- FEI TECNAI ARCTICA [44]
- JEOL 3200FSC [44]
- JEOL CRYO ARM 300 [33]
- TFS GLACIOS [26]
- FEI TITAN [22]
- FEI TECNAI 20 [20]
- JEOL 4000 [17]
- JEOL 3200FS [15]
- FEI/PHILIPS CM120T [14]
- FEI/PHILIPS CM200T [12]
- JEOL 2010F [10]
- FEI TECNAI 12 [9]
- JEOL 2100 [9]
- JEOL 2200FSC [9]
- TFS TALOS [8]
- TFS TALOS F200C [8]
- FEI TECNAI SPIRIT [7]
- FEI/PHILIPS CM200FEG/ST [6]
- FEI/PHILIPS CM300FEG/ST [5]
- JEOL 3000SFF [5]
- FEI/PHILIPS CM300FEG/HE [3]
- JEOL 1000EES [3]
- JEOL 1200EXII [3]
- FEI TECNAI SPHERA [2]
- JEOL 1200 [2]
- JEOL 4000EX [2]
- OTHER [2]
- ZEISS LIBRA120PLUS [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS EM400 [1]
- FEI/PHILIPS EM420 [1]
- JEOL 2010 [1]
- JEOL 2100F [1]
- JEOL CRYO ARM 200 [1]
Electron Source
- FIELD EMISSION GUN [2747]
- LAB6 [78]
- TUNGSTEN HAIRPIN [19]
- OTHER [6]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [580]
- GATAN K3 6K X 4K [377]
- FEI FALCON III 4K X 4K [316]
- KODAK SO-163 FILM [269]
- GATAN K3 BIOQUANTUM 6K X 4K [245]
- FEI FALCON II 4K X 4K [218]
- GATAN K2 QUANTUM 4K X 4K [157]
- FEI FALCON IV 4K X 4K [148]
- GATAN ULTRASCAN 4000 4K X 4K [118]
- DIRECT ELECTRON DE-20 5K X 3K [45]
- GENERIC CCD [34]
- GATAN K2 4K X 4K [25]
- TFS FALCON 4I 4K X 4K [25]
- GENERIC TVIPS 4K X 4K [22]
- OTHER [22]
- FEI EAGLE 4K X 4K [21]
- TVIPS TEMCAM-F415 4K X 4K [20]
- GATAN K2 BASE 4K X 4K [19]
- TVIPS TEMCAM-F416 4K X 4K [16]
- TVIPS TEMCAM-F224 2K X 2K [15]
- DIRECT ELECTRON DE-64 8K X 8K [13]
- GATAN K3 BIOCONTINUUM 6K X 4K [11]
- GENERIC GATAN 4K X 4K [9]
- DIRECT ELECTRON DE-16 4K X 4K [8]
- FEI FALCON I 4K X 4K [8]
- FEI EAGLE 2K X 2K [7]
- DIRECT ELECTRON DE-12 4K X 3K [6]
- GATAN ULTRASCAN 1000 2K X 2K [6]
- GATAN MULTISCAN [5]
- GENERIC CCD 2K X 2K [5]
- GENERIC GATAN [5]
- GENERIC TVIPS [5]
- AGFA SCIENTA FILM [4]
- DECTRIS ARINA 0.2K X 0.2K [4]
- GATAN ULTRASCAN 10000 10K X 10K [4]
- DECTRIS ELA 1K X 0.5K [3]
- GATAN K2 IS 4K X 4K [3]
- GENERIC FILM [2]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- KODAK 4489 FILM [1]
External links
- PDB [1340]
- UniProt [1109]
- PDBe-Kb [908]
- Pfam [780]
- InterPro [765]
- Gene Ontology [687]
- ChEBI [268]
- ChEMBL [196]
- DrugBank [179]
- EMPIAR [156]
- AlphaFold DB [129]
- CATH [52]
- SCOP2 [45]
- Complex Portal [19]