Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Synthetic construct [348]
Homo sapiens [51]
Sulfolobus acidocaldarius [13]
Rattus norvegicus [12]
Mesorhizobium japonicum [11]
Escherichia coli [11]
Sus scrofa [10]
Mus musculus [9]
Gallus gallus [9]
Oryctolagus cuniculus [6]
Danio rerio [5]
Thunnus albacares [5]
Corynebacterium glutamicum [4]
Methylococcus capsulatus [4]
Nitrosopumilus maritimus [4]
Drosophila melanogaster [4]
Lama glama [4]
Human herpesvirus 1 [3]
Human cytomegalovirus [3]
Helicobacter pylori [3]
Human cytomegalovirus [3]
Rhizobium loti [3]
Acinetobacter baumannii [3]
Ovis aries [3]
Pseudomonas phage phipa3 [3]
Human immunodeficiency virus 1 [2]
Sorangium cellulosum [2]
Borrelia burgdorferi [2]
Bacillus cereus [2]
Haloferax volcanii [2]
Sulfolobus acidocaldarius [2]
Severe acute respiratory syndrome coronavirus [2]
Methylorubrum extorquens [2]
Thermus thermophilus [2]
Amygdalobacter nucleatus [2]
Euglena gracilis [2]
Chlamydomonas reinhardtii [2]
Sulfolobus islandicus [2]
Fannyhessea vaginae [2]
Aequorea victoria [2]
Caenorhabditis elegans [2]
Adeno-associated dependoparvovirus b [2]
Mycobacterium tuberculosis [2]
Adeno-associated dependoparvovirus a [2]
Helicobacter pylori [2]
Bos taurus [2]
Klebsiella aerogenes [1]
Enterobacteria phage t4 [1]
Escherichia virus t7 [1]
Rift valley fever phlebovirus [1]
Desmonostoc muscorum [1]
Enterovirus c [1]
Deinococcus radiodurans [1]
Enterococcus faecalis [1]
Bacillus anthracis [1]
Mycolicibacterium smegmatis [1]
Mycobacterium tuberculosis [1]
Cyanobium sp. pcc 7001 [1]
Trypanosoma brucei [1]
Zika virus [1]
Methanocaldococcus jannaschii [1]
Candidatus methylomirabilis lanthanidiphila [1]
Halobacterium salinarum [1]
Nitrosomonas europaea [1]
Deinococcus radiodurans [1]
Enterococus phage vipetofem [1]
Clostridioides difficile [1]
Thermus filiformis [1]
Caldalkalibacillus thermarum [1]
Vicugna pacos [1]
Haloferax volcanii [1]
Nitrosospira briensis [1]
Brucella abortus [1]
Saccharomyces cerevisiae [1]
Phaeodactylum tricornutum [1]
Klebsiella pneumoniae [1]
Methylocystis sp. atcc 49242 [1]
Clostridioides difficile [1]
Adeno-associated dependoparvovirus a [1]
Limulus polyphemus [1]
Pasteurella multocida [1]
Oxalobacter formigenes [1]

EM Method

Resolution

Release Date

Author by name

Liu J [352]
Wang S [346]
Wu H [345]
Zhang M [344]
Gang O [343]
Hu Z [343]
Ren G [343]
Fujiyoshi Y [20]
Tani K [19]
Stahlberg H [18]
Zhang X [16]
Chami M [15]
Biyani N [13]
Hou H [13]
Kowal J [13]
Subramaniam S [13]
Wang C [13]
Wang YH [13]
Wu Y [13]
Zhou J [13]
Berezuk A [12]
Caffrey B [12]
Chittori S [12]
Righetto R [12]
Righetto RD [12]
Tuttle K [12]
Zhu X [12]
Dai H [10]
Wang J [10]
Xu CH [10]
Yang B [10]
Zhang L [10]
Zhu Y [10]
Abe K [9]
Liu L [9]
Lovell S [9]
Seattle Structural Genomics Center For Infectious Disease Ssgcid [9]
Alva V [8]
Bharat TAM [8]
Cassidy CK [8]
Hammons AM [8]
Sun Y [8]
Taylor DW [8]
Taylor KA [8]
Hiroaki Y [7]
Rosenzweig AC [7]
Tucci FJ [7]
Derosier DJ [6]
Grushin K [6]
Hampton CM [6]
Kalyana Sundaram Rv [6]
Li S [6]
Rothman JE [6]
Zhang R [6]
Von Kuegelgen A [6]
Von Kugelgen A [6]
Bharat T [5]
Cao L [5]
Chang G [5]
Cui M [5]
Daum B [5]
Ding W [5]
Frydman J [5]
Gambelli L [5]
Gestaut D [5]
Hamdoun A [5]
Hu M [5]
Iwata S [5]
Kim H [5]
Leitner A [5]
Li Y [5]
Lim S [5]
Lou Z [5]
Nicklisch SCT [5]
Nishizawa T [5]
Nomura N [5]
Opoku-nsiah KA [5]
Oshima A [5]
Park J [5]
Rao Z [5]
Rees SD [5]
Roh SH [5]
Sindelar CV [5]
Stansfeld PJ [5]
Stowell M [5]
Stowell MHB [5]
Sun Z [5]
Wang H [5]
Young MA [5]
Zhou ZH [5]
Van Dorst S [5]
Albers SV [4]
Arthur CP [4]
Bamba T [4]
Batters C [4]
Cheng Y [4]
Chiu P-L [4]
Demo G [4]
Dutcher RC [4]
Ford Z [4]

Journal

TO BE PUBLISHED [364]
NAT COMMUN [47]
PNAS [25]
J BIOL CHEM [19]
NUCLEIC ACIDS RES [12]
STRUCTURE [11]
J MOL BIOL [9]
NAT STRUCT MOL BIOL [9]
NATURE [8]
ELIFE [7]
CELL [6]
EMBO J [5]
ENVIRON SCI TECHNOL. [5]
MOL CELL [4]
BIORXIV [3]
LIFE SCI ALLIANCE [3]
MBIO [3]
MOL.CANCER THER. [3]
PLOS PATHOG [3]
SCI REP [3]
ACS SYNTH BIOL [2]
ACTA CRYSTALLOGR D STRUCT BIOL [2]
COMMUN BIOL [2]
EMBO MOL MED [2]
J CELL BIOL [2]
MICROSCOPY [2]
NAT CELL BIOL [2]
SCI ADV [2]
ACS CATAL [1]
CELL REP [1]
CHEM SCI [1]
EMBO REP [1]
FRONT MICROBIOL [1]
J MED CHEM [1]
J STRUCT BIOL [1]
NAT CHEM BIOL [1]
NAT MICROBIOL [1]
PHYS REV E [1]
PLOS BIOL [1]
RES SQ [1]
SCI TRANSL MED [1]
SCIENCE [1]
VIROL J [1]
VIRUSES [1]

Software

GCTF [343]
IPET [343]
TOMOCTF [343]
CRYOSPARC [54]
RELION [28]
MRC [26]
FOCUS [10]
FREALIGN [10]
IMOD [10]
2DX [7]
PEET [7]
PROTOMO [7]
CISTEM [6]
UCSF CHIMERAX [6]
CHIMERA [3]
SITUS [3]
2DX, AND, MRC [2]
CCP4 [2]
CNS [2]
CTFFIND [2]
CTFPHASEFLIP [2]
UCSF CHIMERA [2]
2DX PCO MODULE [1]
2DX, BHP [1]
COOT [1]
CTFTILT [1]
DYNAMO [1]
EMAN [1]
EMAN, JSPR [1]
EMAN2 [1]
EMCLARITY [1]
FOLDHUNTER AND HOMEMADE SOFTWARE [1]
IMAGE2000 [1]
JSPR [1]
MRC IMAGE PROCESSING PACKAGE [1]
MRC, CCP4, HOMEMADE [1]
NMFF [1]
O [1]
SITUS AND NMFF [1]
WARP [1]

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 572. Page 1 of 58

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EMD-79135

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Cryo EM structure of a formate acetyltransferase PFL from Fannyhessea vaginae in complex with CoA

CryoEM

Release date: Sept. 30, 2026
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 38td

Q-score: 0.509
Similar entry percentile: 56%

Liu L, Lovell S, Hammons AM

To Be Published

EMD-72792

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3D View

RNA polymerase II on Super pause sequence in the sidetracked state

CryoEM

Release date: Sept. 23, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9ycz

Q-score: 0.51
Similar entry percentile: 54%

Vazquez Nunez R, Vos SM

To Be Published

EMD-72795

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RNA polymerase II on Super pause sequence in the pre-translocated state

CryoEM

Release date: Sept. 23, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9yd5

Q-score: 0.502
Similar entry percentile: 44%

Vazquez Nunez R, Vos SM

To Be Published

EMD-79027

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3D View

Cryo EM structure of a formate acetyltransferase PFL from Amygdalobacter nucleatus in complex with CoA

CryoEM

Release date: Sept. 23, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 38pa

Q-score: 0.507
Similar entry percentile: 40%

Liu L, Lovell S, Hammons AM

To Be Published

EMD-78897

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3D View

Cryo EM structure of a peroxidoxin from Trypanosoma brucei reduced form

CryoEM

Release date: Sept. 9, 2026
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 38ky

Q-score: 0.477
Similar entry percentile: 51%

Lanyi Lari N, Lovell S, Hammons AM

To Be Published

EMD-78898

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3D View

Cryo EM structure of GTP cyclohydrolase 1 FolE from Mycobacterium tuberculosis in complex with 8-oxo GTP

CryoEM

Release date: Sept. 9, 2026
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 38kz

Q-score: 0.478
Similar entry percentile: 44%

Liu L, Lovell S, Hammons AM

To Be Published

EMD-78899

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3D View

Cryo EM structure of a formate acetyltransferase PFL from Amygdalobacter nucleatus

Release date: Sept. 9, 2026
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 38la

Q-score: 0.539
Similar entry percentile: 60%

Liu L, Lovell S, Hammons AM

To Be Published

EMD-78900

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3D View

Cryo EM structure of a formate acetyltransferase PFL from Fannyhessea vaginae

Release date: Sept. 9, 2026
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 38lb

Q-score: 0.469
Similar entry percentile: 47%

Liu L, Lovell S, Hammons AM

To Be Published

EMD-75807

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3D View

Particulate methane monooxygenase in membrane arrays

CryoEM

Release date: Aug. 26, 2026
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 11ll

Q-score: 0.07
Similar entry percentile: 7%

Miller CG, Tucci FJ, Nemeth GR, Stolyar S, Lidstrom ME, Rosenzweig AC

J Biol Chem (2026) 302 pp. 113435-113435 [ Pubmed: 42586432 DOI: doi:10.1016/j.jbc.2026.113435 ]

EMD-73963

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cryoEM structure of COMMD-like protein S4Y171 octamer

CryoEM

Release date: June 10, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9za1

Q-score: 0.37
Similar entry percentile: 19%

Liu M, Moody ERR, Blades F, Puente-Lelievre C, Chen KE, Stephens EJ, Michie KA, Cater RJ, Williams TA, Collins BM, Healy MD

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-73536-9 Pubmed: 42215467 ]

Sort by: Download

Showing 1 - 10 of 572. Page 1 of 58

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Synthetic construct [348]
Homo sapiens [51]
Sulfolobus acidocaldarius [13]
Rattus norvegicus [12]
Mesorhizobium japonicum [11]
Escherichia coli [11]
Sus scrofa [10]
Mus musculus [9]
Gallus gallus [9]
Oryctolagus cuniculus [6]
Danio rerio [5]
Thunnus albacares [5]
Corynebacterium glutamicum [4]
Methylococcus capsulatus [4]
Nitrosopumilus maritimus [4]
Drosophila melanogaster [4]
Lama glama [4]
Human herpesvirus 1 [3]
Human cytomegalovirus [3]
Helicobacter pylori [3]
Human cytomegalovirus [3]
Rhizobium loti [3]
Acinetobacter baumannii [3]
Ovis aries [3]
Pseudomonas phage phipa3 [3]
Human immunodeficiency virus 1 [2]
Sorangium cellulosum [2]
Borrelia burgdorferi [2]
Bacillus cereus [2]
Haloferax volcanii [2]
Sulfolobus acidocaldarius [2]
Severe acute respiratory syndrome coronavirus [2]
Methylorubrum extorquens [2]
Thermus thermophilus [2]
Amygdalobacter nucleatus [2]
Euglena gracilis [2]
Chlamydomonas reinhardtii [2]
Sulfolobus islandicus [2]
Fannyhessea vaginae [2]
Aequorea victoria [2]
Caenorhabditis elegans [2]
Adeno-associated dependoparvovirus b [2]
Mycobacterium tuberculosis [2]
Adeno-associated dependoparvovirus a [2]
Helicobacter pylori [2]
Bos taurus [2]
Klebsiella aerogenes [1]
Enterobacteria phage t4 [1]
Escherichia virus t7 [1]
Rift valley fever phlebovirus [1]
Desmonostoc muscorum [1]
Enterovirus c [1]
Deinococcus radiodurans [1]
Enterococcus faecalis [1]
Bacillus anthracis [1]
Mycolicibacterium smegmatis [1]
Mycobacterium tuberculosis [1]
Cyanobium sp. pcc 7001 [1]
Trypanosoma brucei [1]
Zika virus [1]
Methanocaldococcus jannaschii [1]
Candidatus methylomirabilis lanthanidiphila [1]
Halobacterium salinarum [1]
Nitrosomonas europaea [1]
Deinococcus radiodurans [1]
Enterococus phage vipetofem [1]
Clostridioides difficile [1]
Thermus filiformis [1]
Caldalkalibacillus thermarum [1]
Vicugna pacos [1]
Haloferax volcanii [1]
Nitrosospira briensis [1]
Brucella abortus [1]
Saccharomyces cerevisiae [1]
Phaeodactylum tricornutum [1]
Klebsiella pneumoniae [1]
Methylocystis sp. atcc 49242 [1]
Clostridioides difficile [1]
Adeno-associated dependoparvovirus a [1]
Limulus polyphemus [1]
Pasteurella multocida [1]
Oxalobacter formigenes [1]

EM Method

Resolution

Release Date

Author by name

Liu J [352]
Wang S [346]
Wu H [345]
Zhang M [344]
Gang O [343]
Hu Z [343]
Ren G [343]
Fujiyoshi Y [20]
Tani K [19]
Stahlberg H [18]
Zhang X [16]
Chami M [15]
Biyani N [13]
Hou H [13]
Kowal J [13]
Subramaniam S [13]
Wang C [13]
Wang YH [13]
Wu Y [13]
Zhou J [13]
Berezuk A [12]
Caffrey B [12]
Chittori S [12]
Righetto R [12]
Righetto RD [12]
Tuttle K [12]
Zhu X [12]
Dai H [10]
Wang J [10]
Xu CH [10]
Yang B [10]
Zhang L [10]
Zhu Y [10]
Abe K [9]
Liu L [9]
Lovell S [9]
Seattle Structural Genomics Center For Infectious Disease Ssgcid [9]
Alva V [8]
Bharat TAM [8]
Cassidy CK [8]
Hammons AM [8]
Sun Y [8]
Taylor DW [8]
Taylor KA [8]
Hiroaki Y [7]
Rosenzweig AC [7]
Tucci FJ [7]
Derosier DJ [6]
Grushin K [6]
Hampton CM [6]
Kalyana Sundaram Rv [6]
Li S [6]
Rothman JE [6]
Zhang R [6]
Von Kuegelgen A [6]
Von Kugelgen A [6]
Bharat T [5]
Cao L [5]
Chang G [5]
Cui M [5]
Daum B [5]
Ding W [5]
Frydman J [5]
Gambelli L [5]
Gestaut D [5]
Hamdoun A [5]
Hu M [5]
Iwata S [5]
Kim H [5]
Leitner A [5]
Li Y [5]
Lim S [5]
Lou Z [5]
Nicklisch SCT [5]
Nishizawa T [5]
Nomura N [5]
Opoku-nsiah KA [5]
Oshima A [5]
Park J [5]
Rao Z [5]
Rees SD [5]
Roh SH [5]
Sindelar CV [5]
Stansfeld PJ [5]
Stowell M [5]
Stowell MHB [5]
Sun Z [5]
Wang H [5]
Young MA [5]
Zhou ZH [5]
Van Dorst S [5]
Albers SV [4]
Arthur CP [4]
Bamba T [4]
Batters C [4]
Cheng Y [4]
Chiu P-L [4]
Demo G [4]
Dutcher RC [4]
Ford Z [4]

Journal

TO BE PUBLISHED [364]
NAT COMMUN [47]
PNAS [25]
J BIOL CHEM [19]
NUCLEIC ACIDS RES [12]
STRUCTURE [11]
J MOL BIOL [9]
NAT STRUCT MOL BIOL [9]
NATURE [8]
ELIFE [7]
CELL [6]
EMBO J [5]
ENVIRON SCI TECHNOL. [5]
MOL CELL [4]
BIORXIV [3]
LIFE SCI ALLIANCE [3]
MBIO [3]
MOL.CANCER THER. [3]
PLOS PATHOG [3]
SCI REP [3]
ACS SYNTH BIOL [2]
ACTA CRYSTALLOGR D STRUCT BIOL [2]
COMMUN BIOL [2]
EMBO MOL MED [2]
J CELL BIOL [2]
MICROSCOPY [2]
NAT CELL BIOL [2]
SCI ADV [2]
ACS CATAL [1]
CELL REP [1]
CHEM SCI [1]
EMBO REP [1]
FRONT MICROBIOL [1]
J MED CHEM [1]
J STRUCT BIOL [1]
NAT CHEM BIOL [1]
NAT MICROBIOL [1]
PHYS REV E [1]
PLOS BIOL [1]
RES SQ [1]
SCI TRANSL MED [1]
SCIENCE [1]
VIROL J [1]
VIRUSES [1]

Software

GCTF [343]
IPET [343]
TOMOCTF [343]
CRYOSPARC [54]
RELION [28]
MRC [26]
FOCUS [10]
FREALIGN [10]
IMOD [10]
2DX [7]
PEET [7]
PROTOMO [7]
CISTEM [6]
UCSF CHIMERAX [6]
CHIMERA [3]
SITUS [3]
2DX, AND, MRC [2]
CCP4 [2]
CNS [2]
CTFFIND [2]
CTFPHASEFLIP [2]
UCSF CHIMERA [2]
2DX PCO MODULE [1]
2DX, BHP [1]
COOT [1]
CTFTILT [1]
DYNAMO [1]
EMAN [1]
EMAN, JSPR [1]
EMAN2 [1]
EMCLARITY [1]
FOLDHUNTER AND HOMEMADE SOFTWARE [1]
IMAGE2000 [1]
JSPR [1]
MRC IMAGE PROCESSING PACKAGE [1]
MRC, CCP4, HOMEMADE [1]
NMFF [1]
O [1]
SITUS AND NMFF [1]
WARP [1]

Microscope

Electron Source

Film or detector model

External links