Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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tomography
Filter By
Current Database
- EMDB [3543]
- EMPIAR [199]
Current status
- REL [3742]
Sample type
- Complex [1576]
- Cell [935]
- Cellular component [625]
- Sample [341]
- Virus [286]
- Protein [255]
- RNA [217]
- Tissue [66]
- Ligand [23]
- Other [19]
- DNA [16]
- Em label [1]
Organism
- Synthetic construct [665]
- Homo sapiens [473]
- Mus musculus [320]
- Xenopus laevis [229]
- Bos taurus [137]
- Enterobacteria phage m13 [130]
- Chlamydomonas reinhardtii [125]
- Saccharomyces cerevisiae [101]
- (no species) [57]
- Escherichia coli [50]
- Human immunodeficiency virus 1 [49]
- Mycoplasma pneumoniae [43]
- Oryctolagus cuniculus [40]
- Rattus norvegicus [39]
- Drosophila melanogaster [38]
- Severe acute respiratory syndrome coronavirus [31]
- Escherichia coli [30]
- Candidatus arthromitus sp. sfb-mouse-nl [26]
- Yersinia entomophaga [25]
- Caenorhabditis elegans [24]
- Sus scrofa [24]
- (no species) [22]
- (no species) [19]
- Zaire ebolavirus [17]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [16]
- Schizosaccharomyces pombe [16]
- Toxoplasma gondii [16]
- Streptomyces coelicolor [15]
- (no species) [15]
- Plasmodium falciparum [15]
- Sus scrofa [15]
- Candidatus arthromitus sp. sfb-rat-yit [14]
- Enterovirus c [14]
- Apilactobacillus kunkeei [14]
- Chikungunya virus [13]
- Plasmodium falciparum [13]
- Caulobacter vibrioides [12]
- Measles morbillivirus [11]
- Indiana vesiculovirus [11]
- Influenza a virus [11]
- Borrelia burgdorferi [11]
- Chlorocebus aethiops [11]
- Human herpesvirus 1 [10]
- Mycoplasma genitalium [10]
- Spinacia oleracea [10]
- Danio rerio [10]
- Canis lupus [10]
- Bacillus subtilis [9]
- Influenza a virus [9]
- (no species) [9]
- Nanobdella aerobiophila [9]
- Tequintavirus dt57c [9]
- Thalassiosira pseudonana [9]
- Cryptosporidium parvum [9]
- Trypanosoma brucei [9]
- Tetrahymena thermophila [9]
- Gallus gallus [9]
- Caulobacter vibrioides [8]
- Synthetic bacterium jcvi-syn3a [8]
- Rotavirus a [8]
- Candidatus amoebophilus asiaticus [8]
- Aggregatibacter actinomycetemcomitans [8]
- Pseudomonas virus prd1 [7]
- Enterobacteria phage t4 [7]
- Chrysotila carterae [7]
- Chaetomium thermophilum [7]
- Synechococcus elongatus [6]
- Simian immunodeficiency virus [6]
- Murine leukemia virus [6]
- Listeria monocytogenes [6]
- Porcine epidemic diarrhea virus [6]
- Pseudomonas aeruginosa [6]
- 3144506 [6]
- Algoriphagus machipongonensis [6]
- Allium cepa [6]
- Trypanosoma brucei [6]
- Shigella flexneri [6]
- Vaccinia virus [6]
- Salmonella phage p22 [5]
- Synechocystis sp. pcc 6803 [5]
- Acanthamoeba polyphaga mimivirus [5]
- Campylobacter jejuni [5]
- Human respiratory syncytial virus [5]
- Candidatus lokiarchaeum ossiferum [5]
- Porphyridium purpureum [5]
- Dictyostelium discoideum [5]
- Paramecium tetraurelia [5]
- Adeno-associated dependoparvovirus b [5]
- Escherichia virus t7 [4]
- Human respirovirus 3 [4]
- Unidentified influenza virus [4]
- Equine infectious anemia virus [4]
- Mason-pfizer monkey virus [4]
- Mycoplasmoides pneumoniae [4]
- Human immunodeficiency virus [4]
- Pseudomonas aeruginosa [4]
- Enterococcus faecalis [4]
- Synechococcus sp. wh 8109 [4]
- Candidatus thioglobus autotrophicus [4]
- (no species) [4]
EM Method
- Tomography [2736]
- Subtomogram averaging [746]
- Single-particle [55]
- Helical reconstruction [6]
Resolution
- < 2Å [1]
- ≥ 2Å and < 3Å [13]
- ≥ 3Å and < 4Å [33]
- ≥ 4Å and < 5Å [28]
- ≥ 5Å and < 6Å [14]
- ≥ 6Å and < 8Å [42]
- ≥ 8Å and < 12Å [143]
- ≥ 12Å and < 16Å [302]
- ≥ 16Å and < 20Å [76]
- ≥ 20Å and < 30Å [347]
- ≥ 30Å [866]
Model molecular weight
- 50-100 kDa [1]
- 100-250 kDa [12]
- 250-500 kDa [17]
- 500-1000 kDa [20]
- 1-2 MDa [10]
- 2-5 MDa [30]
- 5-10 MDa [2]
- > 10 MDa [4]
Release Date
- 2025 [681]
- 2024 [580]
- 2023 [663]
- 2022 [372]
- 2021 [167]
- 2020 [193]
- 2019 [254]
- 2018 [344]
- 2017 [98]
- 2016 [100]
- 2015 [60]
- 2014 [43]
- 2013 [46]
- 2012 [67]
- 2011 [10]
- 2010 [23]
- 2009 [24]
- 2008 [8]
- 2007 [1]
- 2006 [4]
- 2003 [3]
- 2002 [1]
Author by name
- Liu J [1230]
- Ren G [1204]
- Zhang M [776]
- Liu JF [366]
- Wu H [345]
- Wang S [341]
- Hu Z [338]
- Gang O [337]
- Lei D [264]
- Bustamante C [249]
- Diaz-celis C [249]
- Ashby PD [223]
- Celis CD [223]
- Tao J [223]
- Baumeister W [213]
- Andersen ES [186]
- Geary C [186]
- Mcrae EKS [186]
- Pilhofer M [180]
- Rudenko G [144]
- White MA [143]
- Castro C [131]
- Castro CE [131]
- Huang C [131]
- Huang CM [131]
- Marras A [131]
- Marras AE [131]
- Su H [131]
- Su HJ [131]
- Zhou L [131]
- Misra A [130]
- Reddy S [130]
- Reddy MVVVS [111]
- Mahamid J [109]
- Beck F [94]
- Chiu W [94]
- Zhang X [86]
- Lei M [80]
- Liu H [80]
- Marino JP [80]
- Schmid MF [72]
- Plitzko JM [71]
- Medalia O [70]
- Nicastro D [70]
- Engel BD [69]
- Carragher B [68]
- Potter CS [68]
- Akhouri RR [67]
- Fernandez-busnadiego R [67]
- Skoglund U [67]
- Wan W [66]
- Xu J [64]
- Chlanda P [63]
- Yu Y [63]
- Briggs JAG [62]
- Weiss GL [62]
- Li W [60]
- Jasnin M [58]
- Liu X [58]
- Noble AJ [56]
- Sun L [56]
- Zhang Z [56]
- Sali A [55]
- Martinez-sanchez A [54]
- Ofverstedt LG [52]
- Purba ER [52]
- Wilken G [52]
- Zhao X [52]
- Erdmann PS [51]
- Maruyama IN [51]
- Saita EI [51]
- Shapiro L [51]
- Li A [50]
- Stevens R [50]
- Stevens RC [50]
- White K [50]
- White KL [50]
- Yu B [50]
- Bartesaghi A [49]
- Hartl FU [49]
- Dandey VP [48]
- Schur FKM [48]
- Brasch J [47]
- Oda T [47]
- Agard DA [46]
- Wachsmuth-melm M [46]
- Wei H [45]
- Guo Q [44]
- Tan YZ [44]
- Villa E [44]
- Wimmer B [44]
- Des Georges A [44]
- Krauss R [43]
- Krauss RM [43]
- Kuang Y [43]
- Kuang YL [43]
- Wollweber F [43]
- Gazi A [42]
- Xue L [42]
- Yu Z [42]
Author by ORCID
- Ren G [1142]
- Liu J [1030]
- Zhang M [396]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Andersen ES [186]
- Geary C [186]
- Pilhofer M [133]
- Baumeister W [132]
- Zhou L [131]
- Castro CE [131]
- Marras AE [131]
- Su HJ [131]
- White MA [124]
- Mahamid J [98]
- Chiu W [87]
- Lei M [80]
- Medalia O [64]
- Weiss GL [61]
- Chlanda P [61]
- Engel BD [59]
- Jasnin M [58]
- Sali A [50]
- Sun L [50]
- Xu J [50]
- Zhang X [50]
- Plitzko JM [48]
- Schmid MF [48]
- Briggs JAG [48]
- Oda T [47]
- Fernandez-busnadiego R [46]
- Nicastro D [44]
- Wan W [43]
- Gazi A [42]
- Wollweber F [42]
- Xue L [42]
- Pehau-arnaudet G [40]
- Sartori-rupp A [40]
- Berard M [40]
- Teo TH [40]
- Ayme G [40]
- Legrand A [40]
- Lafaye P [40]
- Wimmer B [40]
- Brier S [40]
- Schnupf P [40]
- Cruz AR [40]
- Feldmuller M [39]
- Noble AJ [38]
- Wachsmuth-melm M [38]
- Chang YW [37]
- Guo Q [36]
- Hartl FU [35]
- Klumpe S [34]
- Chakraborty S [33]
- Agard DA [33]
- Skinner WM [32]
- Chen Z [32]
- Schur FKM [32]
- Rappsilber J [31]
- Wagner J [31]
- Lien YW [31]
- Toro-nahuelpan M [30]
- Kikkawa M [30]
- Bracher A [30]
- Gouaux E [30]
- Bui KH [30]
- Liu J [30]
- Cramer P [29]
- Zimmermann-kogadeeva M [29]
- Bohn S [29]
- Bork P [29]
- Kukulski W [29]
- Chao LH [29]
- Lenz S [29]
- Zhou Y [28]
- Ericson CF [28]
- Bartesaghi A [28]
- Lishko PV [28]
- Carragher B [27]
- Vien M [26]
- Guerin A [26]
- Afanasyev P [26]
- Ren G [26]
- Elferich J [26]
- Martinez M [26]
- Vale RD [26]
- Tan YZ [25]
- Liu Y [25]
- Yu Z [25]
- Subramaniam S [25]
- Wilfling F [24]
- Yanagisawa H [24]
- Borgnia MJ [23]
- Martinez-sanchez A [23]
- Huang Q [23]
- Villa E [23]
- Inde Z [22]
- Ge Y [22]
Journal
- NAT COMMUN [849]
- TO BE PUBLISHED [544]
- BIORXIV [336]
- PNAS [201]
- ELIFE [195]
- J MOL BIOL [128]
- NATURE [123]
- CELL [110]
- SCI REP [108]
- NAT METHODS [91]
- NAT STRUCT MOL BIOL [91]
- NAT MICROBIOL [81]
- J CELL BIOL [73]
- J STRUCT BIOL [70]
- SCIENCE [65]
- PLOS PATHOG [52]
- FRONT ENDOCRINOL [51]
- SCI ADV [51]
- STRUCTURE [47]
- MOL CELL [46]
- EMBO J [41]
- CELL REP [40]
- J VIROL [37]
- DEV CELL [33]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- MOL BIOL CELL [27]
- CELL HOST MICROBE [26]
- J BIOL CHEM [24]
- NAT CELL BIOL [24]
- COMMUN BIOL [23]
- MBIO [23]
- PLOS BIOL [22]
- J CELL SCI [21]
- J BACTERIOL [17]
- NAT NANOTECHNOL [16]
- EMBO REP [14]
- PLOS ONE [14]
- ACTA CRYSTALLOGR D STRUCT BIOL [12]
- J LIPID RES [12]
- COMMUN. BIOL. [11]
- COMMUNICATIONS BIOLOGY [11]
- GENOME BIOL EVOL [10]
- MICROLIFE [9]
- NAT PROTOC [9]
- ACTA NEUROPATHOL [8]
- FRONT MICROBIOL [8]
- ISME J [8]
- J MICROSC [8]
- MOL MICROBIOL [8]
- CURR BIOL [7]
- MICROSC MICROANAL [7]
- FRONT MOL BIOSCI [6]
- PNAS NEXUS [6]
- CELL MICROBIOL [5]
- J STRUCT BIOL X [5]
- NANOSCALE [5]
- BIOCHEM BIOPHYS RES COMMUN [4]
- BLOOD [4]
- CELL DISCOV [4]
- ENVIRON MICROBIOL [4]
- INFECT.IMMUN. [4]
- ISCIENCE [4]
- NPJ BIOFILMS MICROBIOMES [4]
- RES SQ [4]
- ADV SCI [3]
- BIOCHEMISTRY [3]
- BIOCHIM BIOPHYS ACTA [3]
- BIOL IMAGING [3]
- CYTOSKELETON [3]
- FASEB J [3]
- J VIS EXP [3]
- LIFE SCI ALLIANCE [3]
- METHODS IN MICROSCOPY [3]
- MSPHERE [3]
- NAT COMM [3]
- PLOS COMPUT BIOL [3]
- PLOS GENET [3]
- PROTEIN SCI [3]
- BIOCHEM J [2]
- BIOMACROMOLECULES [2]
- EMBO REPORTS [2]
- FEBS LETT [2]
- FRONTIERS IN MICROBIOLOGY [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J NEUROSCI [2]
- J.BIOCHEM. [2]
- J.MUSCLE RES.CELL.MOTIL. [2]
- METHODS MICROSC [2]
- MICRO PUBL BIOL [2]
- NAT CHEM [2]
- NAT PLANTS [2]
- NUCLEIC ACIDS RES [2]
- VIROLOGY [2]
- ANTIMICROB.AGENTS CHEMOTHER. [1]
- APPL ENVIRON MICROBIOL [1]
- BIOLOGICAL IMAGING [1]
- BIOMOLECULES [1]
- BIOPHYS J [1]
- CELL REP METHODS [1]
Software
- IMOD [875]
- TOMOCTF [520]
- IPET [433]
- GCTF [340]
- RELION [239]
- SPIDER [229]
- ETOMO [95]
- WARP [91]
- TOMO3D [62]
- EMAN2 [59]
- PEET [51]
- DYNAMO [50]
- CTFFIND [49]
- CHIMERA [39]
- PYTOM [31]
- PROTOMO [30]
- CRYOSPARC [28]
- MATLAB [23]
- PRIISM/IVE [23]
- CTFPHASEFLIP [22]
- STOPGAP [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- COMET [15]
- TOMOALIGN [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- EMCLARITY [13]
- NOVACTF [13]
- PEET, RUBY-HELIX [13]
- SERIALEM [13]
- AV3 [11]
- IMOD, RAPTOR, PROTOMO [11]
- MOTIONCORR2 [11]
- CRYOLO [10]
- TOM [10]
- EMAN [9]
- BSOFT [8]
- EMIRA [8]
- IMOD, EMAN2 [7]
- IMOD, PROTOMO, I3, EMAN [7]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [7]
- UCSF CHIMERA [7]
- UCSF CHIMERAX [7]
- I3, PROTOMO [6]
- IMOD, DYNAMO [6]
- TOM TOOLBOX [6]
- IMOD, TOMO3D [5]
- EM [4]
- ETOMO, IMOD [4]
- IMOD AND BSOFT [4]
- IMOD, PEET [4]
- IPET, AND, FETR [4]
- M [4]
- MPSA [4]
- PROJALIGN [4]
- AMIRAMOL 3.0 [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- PROTOMO, IMOD [3]
- TOM, AV3, PYTOM [3]
- XMIPP [3]
- AMIRA, IMOD [2]
- CISTEM [2]
- EMAN1 [2]
- ETOMO, DYNAMO [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, TOM, AV3 [2]
- IMOD, TOMOHUNTER [2]
- INDIVIDUAL-PARTCILE, ELECTRON, TOMOGRPHY, IPET , AND, FETR [2]
- JSUBTOMO [2]
- MANUAL [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- SUPER-SAMPLING SART [2]
- TOM, AV3 [2]
- 3DMOD [1]
- APPION [1]
- AUTO3DEM [1]
- CHIMERA, NAMD [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- FLEX-EM [1]
- FREALIGN [1]
- ICON [1]
- IMOD, AV3, TOM, DYNAMO [1]
- IMOD, PEET, TOMOCTF [1]
- IMOD, RAPTOR [1]
- IMOD, TOM, PYTOM [1]
- IMOD, TOMO3D, RELION [1]
- IMOD, XMIPP, AV3 [1]
- IMOD,AV3,MATLAB [1]
- IMOD,RAPTOR,PROTOMO [1]
- IPET, SPIDER, EMAN, TOMOCTF, IMOD [1]
- LEGINON [1]
- MD [1]
- MDFF [1]
- MRC IMAGE PROCESSING PACKAGE [1]
- NAMD [1]
- PFT [1]
- RAPTOR [1]
Microscope
- FEI TITAN KRIOS [1914]
- ZEISS LIBRA120PLUS [465]
- TFS KRIOS [389]
- FEI POLARA 300 [145]
- FEI TECNAI F20 [125]
- JEOL 2200FS [53]
- FEI TITAN [52]
- FEI TECNAI 20 [51]
- FEI TECNAI F30 [50]
- FEI TALOS ARCTICA [46]
- JEOL 3200FSC [43]
- JEOL 3100FFC [37]
- FEI/PHILIPS CM300FEG/T [34]
- TFS GLACIOS [21]
- JEOL 2100 [20]
- FEI TECNAI 12 [19]
- JEOL 1400 [14]
- TFS TALOS [13]
- JEOL 2200FSC [11]
- FEI/PHILIPS CM200FEG [8]
- JEOL 3100FEF [7]
- FEI TECNAI ARCTICA [6]
- FEI TECNAI SPIRIT [5]
- HITACHI H3000 UHVEM [4]
- JEOL CRYO ARM 300 [4]
- JEOL 2100F [3]
- FEI/PHILIPS CM120T [1]
- FEI/PHILIPS CM300FEG/ST [1]
- FEI/PHILIPS EM400 [1]
- JEOL 2010F [1]
- OTHER [1]
- TFS TALOS F200C [1]
Electron Source
- FIELD EMISSION GUN [2964]
- LAB6 [541]
- OTHER [21]
- TUNGSTEN HAIRPIN [17]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [785]
- GATAN K2 SUMMIT 4K X 4K [694]
- GATAN ULTRASCAN 4000 4K X 4K [548]
- GATAN K2 QUANTUM 4K X 4K [358]
- GATAN K3 6K X 4K [309]
- FEI FALCON IV 4K X 4K [162]
- FEI FALCON II 4K X 4K [106]
- OTHER [63]
- TVIPS TEMCAM-F416 4K X 4K [62]
- GATAN ULTRASCAN 1000 2K X 2K [53]
- FEI FALCON III 4K X 4K [47]
- GATAN K3 BIOCONTINUUM 6K X 4K [43]
- TFS FALCON 4I 4K X 4K [34]
- DIRECT ELECTRON DE-20 5K X 3K [28]
- GENERIC CCD [23]
- TVIPS TEMCAM-F415 4K X 4K [23]
- TVIPS TEMCAM-F224 2K X 2K [21]
- GENERIC GATAN [19]
- GATAN MULTISCAN [18]
- FEI EAGLE 4K X 4K [15]
- GATAN K2 4K X 4K [14]
- GENERIC GATAN 2K X 2K [13]
- GATAN K2 BASE 4K X 4K [11]
- TVIPS TEMCAM-F216 2K X 2K [11]
- GENERIC TVIPS 4K X 4K [10]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC CCD 2K X 2K [6]
- GATAN ORIUS SC1000 4K X 2.7K [5]
- DECTRIS ARINA 0.2K X 0.2K [4]
- GATAN ORIUS SC200 2K X 2K [4]
- GENERIC GATAN 4K X 4K [4]
- DIRECT ELECTRON DE-12 4K X 3K [3]
- DIRECT ELECTRON DE-64 8K X 8K [2]
- FEI EAGLE 2K X 2K [2]
- FEI FALCON I 4K X 4K [2]
- TVIPS TEMCAM-F816 8K X 8K [2]
- FEI CETA 4K X 4K [1]
- KODAK SO-163 FILM [1]
EMPIAR Experiment type
- EMDB [165]
- CLXM [11]
- SSET [11]
- ATUM-SEM [4]
- SXT [4]
- HARD X-RAY/X-RAY MICROCT [2]
- CLEM [1]
- EXCEPTION [1]
EMPIAR Image category
- TILT SERIES [135]
- MICROGRAPHS - MULTIFRAME [53]
- RECONSTRUCTED VOLUMES [45]
- MICROGRAPHS - SINGLE FRAME [25]
- SUBTOMOGRAMS [5]
- CLASS AVERAGES [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [1]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [1]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]
- SOFT X-RAY TOMOGRAMS [1]
- STITCHED MAPS [1]
External links
- EMPIAR [322]
- EMDB [166]
- UniProt [146]
- PDBe-Kb [141]
- AlphaFold DB [127]
- PDB [97]
- InterPro [77]
- Gene Ontology [72]
- Pfam [69]
- Complex Portal [30]
- ChEBI [20]
- ChEMBL [19]
- DrugBank [19]
- SCOP2 [17]
- BioImage Archive [12]
Release date: Dec. 24, 2025
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Huang QJ, McDaniel CN, Griffith AA, Schiffer CA, Somasundaran M
J Vis Exp (2025) [ Pubmed: 41284633 DOI: doi:10.3791/68636 ]
Release date: Dec. 17, 2025
Resolution: 31.0 Å
EM Method: Subtomogram averaging
Resolution: 31.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 34.0 Å
EM Method: Subtomogram averaging
Resolution: 34.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 28.0 Å
EM Method: Subtomogram averaging
Resolution: 28.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 32.0 Å
EM Method: Subtomogram averaging
Resolution: 32.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 28.0 Å
EM Method: Subtomogram averaging
Resolution: 28.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 32.0 Å
EM Method: Subtomogram averaging
Resolution: 32.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 33.0 Å
EM Method: Subtomogram averaging
Resolution: 33.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Release date: Dec. 17, 2025
Resolution: 32.0 Å
EM Method: Subtomogram averaging
Resolution: 32.0 Å
EM Method: Subtomogram averaging
Buzzard E, McLaren M, Knapp-Wilson A, Zhang D, White R, Daum B, Kuwabara PE, Collinson I, Gold VAM
To Be Published
Filter By
Current Database
- EMDB [3543]
- EMPIAR [199]
Current status
- REL [3742]
Sample type
- Complex [1576]
- Cell [935]
- Cellular component [625]
- Sample [341]
- Virus [286]
- Protein [255]
- RNA [217]
- Tissue [66]
- Ligand [23]
- Other [19]
- DNA [16]
- Em label [1]
Organism
- Synthetic construct [665]
- Homo sapiens [473]
- Mus musculus [320]
- Xenopus laevis [229]
- Bos taurus [137]
- Enterobacteria phage m13 [130]
- Chlamydomonas reinhardtii [125]
- Saccharomyces cerevisiae [101]
- (no species) [57]
- Escherichia coli [50]
- Human immunodeficiency virus 1 [49]
- Mycoplasma pneumoniae [43]
- Oryctolagus cuniculus [40]
- Rattus norvegicus [39]
- Drosophila melanogaster [38]
- Severe acute respiratory syndrome coronavirus [31]
- Escherichia coli [30]
- Candidatus arthromitus sp. sfb-mouse-nl [26]
- Yersinia entomophaga [25]
- Caenorhabditis elegans [24]
- Sus scrofa [24]
- (no species) [22]
- (no species) [19]
- Zaire ebolavirus [17]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [16]
- Schizosaccharomyces pombe [16]
- Toxoplasma gondii [16]
- Streptomyces coelicolor [15]
- (no species) [15]
- Plasmodium falciparum [15]
- Sus scrofa [15]
- Candidatus arthromitus sp. sfb-rat-yit [14]
- Enterovirus c [14]
- Apilactobacillus kunkeei [14]
- Chikungunya virus [13]
- Plasmodium falciparum [13]
- Caulobacter vibrioides [12]
- Measles morbillivirus [11]
- Indiana vesiculovirus [11]
- Influenza a virus [11]
- Borrelia burgdorferi [11]
- Chlorocebus aethiops [11]
- Human herpesvirus 1 [10]
- Mycoplasma genitalium [10]
- Spinacia oleracea [10]
- Danio rerio [10]
- Canis lupus [10]
- Bacillus subtilis [9]
- Influenza a virus [9]
- (no species) [9]
- Nanobdella aerobiophila [9]
- Tequintavirus dt57c [9]
- Thalassiosira pseudonana [9]
- Cryptosporidium parvum [9]
- Trypanosoma brucei [9]
- Tetrahymena thermophila [9]
- Gallus gallus [9]
- Caulobacter vibrioides [8]
- Synthetic bacterium jcvi-syn3a [8]
- Rotavirus a [8]
- Candidatus amoebophilus asiaticus [8]
- Aggregatibacter actinomycetemcomitans [8]
- Pseudomonas virus prd1 [7]
- Enterobacteria phage t4 [7]
- Chrysotila carterae [7]
- Chaetomium thermophilum [7]
- Synechococcus elongatus [6]
- Simian immunodeficiency virus [6]
- Murine leukemia virus [6]
- Listeria monocytogenes [6]
- Porcine epidemic diarrhea virus [6]
- Pseudomonas aeruginosa [6]
- 3144506 [6]
- Algoriphagus machipongonensis [6]
- Allium cepa [6]
- Trypanosoma brucei [6]
- Shigella flexneri [6]
- Vaccinia virus [6]
- Salmonella phage p22 [5]
- Synechocystis sp. pcc 6803 [5]
- Acanthamoeba polyphaga mimivirus [5]
- Campylobacter jejuni [5]
- Human respiratory syncytial virus [5]
- Candidatus lokiarchaeum ossiferum [5]
- Porphyridium purpureum [5]
- Dictyostelium discoideum [5]
- Paramecium tetraurelia [5]
- Adeno-associated dependoparvovirus b [5]
- Escherichia virus t7 [4]
- Human respirovirus 3 [4]
- Unidentified influenza virus [4]
- Equine infectious anemia virus [4]
- Mason-pfizer monkey virus [4]
- Mycoplasmoides pneumoniae [4]
- Human immunodeficiency virus [4]
- Pseudomonas aeruginosa [4]
- Enterococcus faecalis [4]
- Synechococcus sp. wh 8109 [4]
- Candidatus thioglobus autotrophicus [4]
- (no species) [4]
EM Method
- Tomography [2736]
- Subtomogram averaging [746]
- Single-particle [55]
- Helical reconstruction [6]
Resolution
- < 2Å [1]
- ≥ 2Å and < 3Å [13]
- ≥ 3Å and < 4Å [33]
- ≥ 4Å and < 5Å [28]
- ≥ 5Å and < 6Å [14]
- ≥ 6Å and < 8Å [42]
- ≥ 8Å and < 12Å [143]
- ≥ 12Å and < 16Å [302]
- ≥ 16Å and < 20Å [76]
- ≥ 20Å and < 30Å [347]
- ≥ 30Å [866]
Model molecular weight
- 50-100 kDa [1]
- 100-250 kDa [12]
- 250-500 kDa [17]
- 500-1000 kDa [20]
- 1-2 MDa [10]
- 2-5 MDa [30]
- 5-10 MDa [2]
- > 10 MDa [4]
Release Date
- 2025 [681]
- 2024 [580]
- 2023 [663]
- 2022 [372]
- 2021 [167]
- 2020 [193]
- 2019 [254]
- 2018 [344]
- 2017 [98]
- 2016 [100]
- 2015 [60]
- 2014 [43]
- 2013 [46]
- 2012 [67]
- 2011 [10]
- 2010 [23]
- 2009 [24]
- 2008 [8]
- 2007 [1]
- 2006 [4]
- 2003 [3]
- 2002 [1]
Author by name
- Liu J [1230]
- Ren G [1204]
- Zhang M [776]
- Liu JF [366]
- Wu H [345]
- Wang S [341]
- Hu Z [338]
- Gang O [337]
- Lei D [264]
- Bustamante C [249]
- Diaz-celis C [249]
- Ashby PD [223]
- Celis CD [223]
- Tao J [223]
- Baumeister W [213]
- Andersen ES [186]
- Geary C [186]
- Mcrae EKS [186]
- Pilhofer M [180]
- Rudenko G [144]
- White MA [143]
- Castro C [131]
- Castro CE [131]
- Huang C [131]
- Huang CM [131]
- Marras A [131]
- Marras AE [131]
- Su H [131]
- Su HJ [131]
- Zhou L [131]
- Misra A [130]
- Reddy S [130]
- Reddy MVVVS [111]
- Mahamid J [109]
- Beck F [94]
- Chiu W [94]
- Zhang X [86]
- Lei M [80]
- Liu H [80]
- Marino JP [80]
- Schmid MF [72]
- Plitzko JM [71]
- Medalia O [70]
- Nicastro D [70]
- Engel BD [69]
- Carragher B [68]
- Potter CS [68]
- Akhouri RR [67]
- Fernandez-busnadiego R [67]
- Skoglund U [67]
- Wan W [66]
- Xu J [64]
- Chlanda P [63]
- Yu Y [63]
- Briggs JAG [62]
- Weiss GL [62]
- Li W [60]
- Jasnin M [58]
- Liu X [58]
- Noble AJ [56]
- Sun L [56]
- Zhang Z [56]
- Sali A [55]
- Martinez-sanchez A [54]
- Ofverstedt LG [52]
- Purba ER [52]
- Wilken G [52]
- Zhao X [52]
- Erdmann PS [51]
- Maruyama IN [51]
- Saita EI [51]
- Shapiro L [51]
- Li A [50]
- Stevens R [50]
- Stevens RC [50]
- White K [50]
- White KL [50]
- Yu B [50]
- Bartesaghi A [49]
- Hartl FU [49]
- Dandey VP [48]
- Schur FKM [48]
- Brasch J [47]
- Oda T [47]
- Agard DA [46]
- Wachsmuth-melm M [46]
- Wei H [45]
- Guo Q [44]
- Tan YZ [44]
- Villa E [44]
- Wimmer B [44]
- Des Georges A [44]
- Krauss R [43]
- Krauss RM [43]
- Kuang Y [43]
- Kuang YL [43]
- Wollweber F [43]
- Gazi A [42]
- Xue L [42]
- Yu Z [42]
Author by ORCID
- Ren G [1142]
- Liu J [1030]
- Zhang M [396]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Andersen ES [186]
- Geary C [186]
- Pilhofer M [133]
- Baumeister W [132]
- Zhou L [131]
- Castro CE [131]
- Marras AE [131]
- Su HJ [131]
- White MA [124]
- Mahamid J [98]
- Chiu W [87]
- Lei M [80]
- Medalia O [64]
- Weiss GL [61]
- Chlanda P [61]
- Engel BD [59]
- Jasnin M [58]
- Sali A [50]
- Sun L [50]
- Xu J [50]
- Zhang X [50]
- Plitzko JM [48]
- Schmid MF [48]
- Briggs JAG [48]
- Oda T [47]
- Fernandez-busnadiego R [46]
- Nicastro D [44]
- Wan W [43]
- Gazi A [42]
- Wollweber F [42]
- Xue L [42]
- Pehau-arnaudet G [40]
- Sartori-rupp A [40]
- Berard M [40]
- Teo TH [40]
- Ayme G [40]
- Legrand A [40]
- Lafaye P [40]
- Wimmer B [40]
- Brier S [40]
- Schnupf P [40]
- Cruz AR [40]
- Feldmuller M [39]
- Noble AJ [38]
- Wachsmuth-melm M [38]
- Chang YW [37]
- Guo Q [36]
- Hartl FU [35]
- Klumpe S [34]
- Chakraborty S [33]
- Agard DA [33]
- Skinner WM [32]
- Chen Z [32]
- Schur FKM [32]
- Rappsilber J [31]
- Wagner J [31]
- Lien YW [31]
- Toro-nahuelpan M [30]
- Kikkawa M [30]
- Bracher A [30]
- Gouaux E [30]
- Bui KH [30]
- Liu J [30]
- Cramer P [29]
- Zimmermann-kogadeeva M [29]
- Bohn S [29]
- Bork P [29]
- Kukulski W [29]
- Chao LH [29]
- Lenz S [29]
- Zhou Y [28]
- Ericson CF [28]
- Bartesaghi A [28]
- Lishko PV [28]
- Carragher B [27]
- Vien M [26]
- Guerin A [26]
- Afanasyev P [26]
- Ren G [26]
- Elferich J [26]
- Martinez M [26]
- Vale RD [26]
- Tan YZ [25]
- Liu Y [25]
- Yu Z [25]
- Subramaniam S [25]
- Wilfling F [24]
- Yanagisawa H [24]
- Borgnia MJ [23]
- Martinez-sanchez A [23]
- Huang Q [23]
- Villa E [23]
- Inde Z [22]
- Ge Y [22]
Journal
- NAT COMMUN [849]
- TO BE PUBLISHED [544]
- BIORXIV [336]
- PNAS [201]
- ELIFE [195]
- J MOL BIOL [128]
- NATURE [123]
- CELL [110]
- SCI REP [108]
- NAT METHODS [91]
- NAT STRUCT MOL BIOL [91]
- NAT MICROBIOL [81]
- J CELL BIOL [73]
- J STRUCT BIOL [70]
- SCIENCE [65]
- PLOS PATHOG [52]
- FRONT ENDOCRINOL [51]
- SCI ADV [51]
- STRUCTURE [47]
- MOL CELL [46]
- EMBO J [41]
- CELL REP [40]
- J VIROL [37]
- DEV CELL [33]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- MOL BIOL CELL [27]
- CELL HOST MICROBE [26]
- J BIOL CHEM [24]
- NAT CELL BIOL [24]
- COMMUN BIOL [23]
- MBIO [23]
- PLOS BIOL [22]
- J CELL SCI [21]
- J BACTERIOL [17]
- NAT NANOTECHNOL [16]
- EMBO REP [14]
- PLOS ONE [14]
- ACTA CRYSTALLOGR D STRUCT BIOL [12]
- J LIPID RES [12]
- COMMUN. BIOL. [11]
- COMMUNICATIONS BIOLOGY [11]
- GENOME BIOL EVOL [10]
- MICROLIFE [9]
- NAT PROTOC [9]
- ACTA NEUROPATHOL [8]
- FRONT MICROBIOL [8]
- ISME J [8]
- J MICROSC [8]
- MOL MICROBIOL [8]
- CURR BIOL [7]
- MICROSC MICROANAL [7]
- FRONT MOL BIOSCI [6]
- PNAS NEXUS [6]
- CELL MICROBIOL [5]
- J STRUCT BIOL X [5]
- NANOSCALE [5]
- BIOCHEM BIOPHYS RES COMMUN [4]
- BLOOD [4]
- CELL DISCOV [4]
- ENVIRON MICROBIOL [4]
- INFECT.IMMUN. [4]
- ISCIENCE [4]
- NPJ BIOFILMS MICROBIOMES [4]
- RES SQ [4]
- ADV SCI [3]
- BIOCHEMISTRY [3]
- BIOCHIM BIOPHYS ACTA [3]
- BIOL IMAGING [3]
- CYTOSKELETON [3]
- FASEB J [3]
- J VIS EXP [3]
- LIFE SCI ALLIANCE [3]
- METHODS IN MICROSCOPY [3]
- MSPHERE [3]
- NAT COMM [3]
- PLOS COMPUT BIOL [3]
- PLOS GENET [3]
- PROTEIN SCI [3]
- BIOCHEM J [2]
- BIOMACROMOLECULES [2]
- EMBO REPORTS [2]
- FEBS LETT [2]
- FRONTIERS IN MICROBIOLOGY [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J NEUROSCI [2]
- J.BIOCHEM. [2]
- J.MUSCLE RES.CELL.MOTIL. [2]
- METHODS MICROSC [2]
- MICRO PUBL BIOL [2]
- NAT CHEM [2]
- NAT PLANTS [2]
- NUCLEIC ACIDS RES [2]
- VIROLOGY [2]
- ANTIMICROB.AGENTS CHEMOTHER. [1]
- APPL ENVIRON MICROBIOL [1]
- BIOLOGICAL IMAGING [1]
- BIOMOLECULES [1]
- BIOPHYS J [1]
- CELL REP METHODS [1]
Software
- IMOD [875]
- TOMOCTF [520]
- IPET [433]
- GCTF [340]
- RELION [239]
- SPIDER [229]
- ETOMO [95]
- WARP [91]
- TOMO3D [62]
- EMAN2 [59]
- PEET [51]
- DYNAMO [50]
- CTFFIND [49]
- CHIMERA [39]
- PYTOM [31]
- PROTOMO [30]
- CRYOSPARC [28]
- MATLAB [23]
- PRIISM/IVE [23]
- CTFPHASEFLIP [22]
- STOPGAP [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- COMET [15]
- TOMOALIGN [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- EMCLARITY [13]
- NOVACTF [13]
- PEET, RUBY-HELIX [13]
- SERIALEM [13]
- AV3 [11]
- IMOD, RAPTOR, PROTOMO [11]
- MOTIONCORR2 [11]
- CRYOLO [10]
- TOM [10]
- EMAN [9]
- BSOFT [8]
- EMIRA [8]
- IMOD, EMAN2 [7]
- IMOD, PROTOMO, I3, EMAN [7]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [7]
- UCSF CHIMERA [7]
- UCSF CHIMERAX [7]
- I3, PROTOMO [6]
- IMOD, DYNAMO [6]
- TOM TOOLBOX [6]
- IMOD, TOMO3D [5]
- EM [4]
- ETOMO, IMOD [4]
- IMOD AND BSOFT [4]
- IMOD, PEET [4]
- IPET, AND, FETR [4]
- M [4]
- MPSA [4]
- PROJALIGN [4]
- AMIRAMOL 3.0 [3]
- ETOMO, FROM, IMOD, SOFTWARE [3]
- PROTOMO, IMOD [3]
- TOM, AV3, PYTOM [3]
- XMIPP [3]
- AMIRA, IMOD [2]
- CISTEM [2]
- EMAN1 [2]
- ETOMO, DYNAMO [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, TOM, AV3 [2]
- IMOD, TOMOHUNTER [2]
- INDIVIDUAL-PARTCILE, ELECTRON, TOMOGRPHY, IPET , AND, FETR [2]
- JSUBTOMO [2]
- MANUAL [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- SUPER-SAMPLING SART [2]
- TOM, AV3 [2]
- 3DMOD [1]
- APPION [1]
- AUTO3DEM [1]
- CHIMERA, NAMD [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- FLEX-EM [1]
- FREALIGN [1]
- ICON [1]
- IMOD, AV3, TOM, DYNAMO [1]
- IMOD, PEET, TOMOCTF [1]
- IMOD, RAPTOR [1]
- IMOD, TOM, PYTOM [1]
- IMOD, TOMO3D, RELION [1]
- IMOD, XMIPP, AV3 [1]
- IMOD,AV3,MATLAB [1]
- IMOD,RAPTOR,PROTOMO [1]
- IPET, SPIDER, EMAN, TOMOCTF, IMOD [1]
- LEGINON [1]
- MD [1]
- MDFF [1]
- MRC IMAGE PROCESSING PACKAGE [1]
- NAMD [1]
- PFT [1]
- RAPTOR [1]
Microscope
- FEI TITAN KRIOS [1914]
- ZEISS LIBRA120PLUS [465]
- TFS KRIOS [389]
- FEI POLARA 300 [145]
- FEI TECNAI F20 [125]
- JEOL 2200FS [53]
- FEI TITAN [52]
- FEI TECNAI 20 [51]
- FEI TECNAI F30 [50]
- FEI TALOS ARCTICA [46]
- JEOL 3200FSC [43]
- JEOL 3100FFC [37]
- FEI/PHILIPS CM300FEG/T [34]
- TFS GLACIOS [21]
- JEOL 2100 [20]
- FEI TECNAI 12 [19]
- JEOL 1400 [14]
- TFS TALOS [13]
- JEOL 2200FSC [11]
- FEI/PHILIPS CM200FEG [8]
- JEOL 3100FEF [7]
- FEI TECNAI ARCTICA [6]
- FEI TECNAI SPIRIT [5]
- HITACHI H3000 UHVEM [4]
- JEOL CRYO ARM 300 [4]
- JEOL 2100F [3]
- FEI/PHILIPS CM120T [1]
- FEI/PHILIPS CM300FEG/ST [1]
- FEI/PHILIPS EM400 [1]
- JEOL 2010F [1]
- OTHER [1]
- TFS TALOS F200C [1]
Electron Source
- FIELD EMISSION GUN [2964]
- LAB6 [541]
- OTHER [21]
- TUNGSTEN HAIRPIN [17]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [785]
- GATAN K2 SUMMIT 4K X 4K [694]
- GATAN ULTRASCAN 4000 4K X 4K [548]
- GATAN K2 QUANTUM 4K X 4K [358]
- GATAN K3 6K X 4K [309]
- FEI FALCON IV 4K X 4K [162]
- FEI FALCON II 4K X 4K [106]
- OTHER [63]
- TVIPS TEMCAM-F416 4K X 4K [62]
- GATAN ULTRASCAN 1000 2K X 2K [53]
- FEI FALCON III 4K X 4K [47]
- GATAN K3 BIOCONTINUUM 6K X 4K [43]
- TFS FALCON 4I 4K X 4K [34]
- DIRECT ELECTRON DE-20 5K X 3K [28]
- GENERIC CCD [23]
- TVIPS TEMCAM-F415 4K X 4K [23]
- TVIPS TEMCAM-F224 2K X 2K [21]
- GENERIC GATAN [19]
- GATAN MULTISCAN [18]
- FEI EAGLE 4K X 4K [15]
- GATAN K2 4K X 4K [14]
- GENERIC GATAN 2K X 2K [13]
- GATAN K2 BASE 4K X 4K [11]
- TVIPS TEMCAM-F216 2K X 2K [11]
- GENERIC TVIPS 4K X 4K [10]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC CCD 2K X 2K [6]
- GATAN ORIUS SC1000 4K X 2.7K [5]
- DECTRIS ARINA 0.2K X 0.2K [4]
- GATAN ORIUS SC200 2K X 2K [4]
- GENERIC GATAN 4K X 4K [4]
- DIRECT ELECTRON DE-12 4K X 3K [3]
- DIRECT ELECTRON DE-64 8K X 8K [2]
- FEI EAGLE 2K X 2K [2]
- FEI FALCON I 4K X 4K [2]
- TVIPS TEMCAM-F816 8K X 8K [2]
- FEI CETA 4K X 4K [1]
- KODAK SO-163 FILM [1]
EMPIAR Experiment type
- EMDB [165]
- CLXM [11]
- SSET [11]
- ATUM-SEM [4]
- SXT [4]
- HARD X-RAY/X-RAY MICROCT [2]
- CLEM [1]
- EXCEPTION [1]
EMPIAR Image category
- TILT SERIES [135]
- MICROGRAPHS - MULTIFRAME [53]
- RECONSTRUCTED VOLUMES [45]
- MICROGRAPHS - SINGLE FRAME [25]
- SUBTOMOGRAMS [5]
- CLASS AVERAGES [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [1]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [1]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [1]
- SOFT X-RAY TOMOGRAMS [1]
- STITCHED MAPS [1]
External links
- EMPIAR [322]
- EMDB [166]
- UniProt [146]
- PDBe-Kb [141]
- AlphaFold DB [127]
- PDB [97]
- InterPro [77]
- Gene Ontology [72]
- Pfam [69]
- Complex Portal [30]
- ChEBI [20]
- ChEMBL [19]
- DrugBank [19]
- SCOP2 [17]
- BioImage Archive [12]