Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
Filter By
Current Database
- EMDB [15969]
- EMPIAR [585]
Current status
- REL [16554]
Sample type
- Complex [13423]
- Protein [11335]
- Ligand [7160]
- RNA [1023]
- Sample [840]
- Cellular component [779]
- Virus [726]
- DNA [713]
- Cell [681]
- Other [46]
- Tissue [45]
Organism
- Homo sapiens [6381]
- Mus musculus [1466]
- Severe acute respiratory syndrome coronavirus [1266]
- Escherichia coli [797]
- Synthetic construct [770]
- Saccharomyces cerevisiae [677]
- Human immunodeficiency virus 1 [581]
- Rattus norvegicus [526]
- Oryctolagus cuniculus [428]
- Bos taurus [339]
- Xenopus laevis [328]
- Macaca mulatta [310]
- Escherichia coli [301]
- Lama glama [278]
- Sus scrofa [257]
- Saccharomyces cerevisiae [172]
- Arabidopsis thaliana [165]
- Influenza a virus [152]
- Chlamydomonas reinhardtii [121]
- Danio rerio [86]
- Drosophila melanogaster [83]
- Gallus gallus [79]
- Vicugna pacos [74]
- Mycoplasma pneumoniae [72]
- Mycolicibacterium smegmatis [67]
- Escherichia coli [59]
- Staphylococcus aureus [53]
- Human cytomegalovirus [52]
- Plasmodium falciparum [52]
- Plasmodium falciparum [48]
- Human immunodeficiency virus [47]
- Mycobacterium tuberculosis [47]
- (no species) [42]
- Middle east respiratory syndrome-related coronavirus [42]
- Severe acute respiratory syndrome coronavirus [42]
- Enterobacteria phage t4 [41]
- Thermus thermophilus [41]
- Monkeypox virus [40]
- Synechocystis sp. pcc 6803 [40]
- Schizosaccharomyces pombe [40]
- (no species) [39]
- Zaire ebolavirus [38]
- Eastern equine encephalitis virus [37]
- Thermotoga maritima [36]
- Mycobacterium tuberculosis [36]
- Human herpesvirus 1 [35]
- Chikungunya virus [35]
- Macaca fascicularis [35]
- Caenorhabditis elegans [34]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [34]
- Strongylocentrotus purpuratus [33]
- Anthocerotibacter panamensis [32]
- Human coronavirus hku1 [32]
- Salmonella enterica [32]
- Pseudomonas aeruginosa [30]
- Western equine encephalitis virus [29]
- Thermococcus profundus [29]
- Tetrahymena thermophila [29]
- Vibrio cholerae [29]
- Escherichia virus t7 [28]
- Canis lupus [28]
- Thermus thermophilus [27]
- Candidatus arthromitus sp. sfb-mouse-nl [26]
- Semliki forest virus [25]
- Enterovirus b [25]
- Rotavirus a [24]
- (no species) [23]
- Adeno-associated virus [23]
- Candida albicans [23]
- Simian immunodeficiency virus [22]
- Acetivibrio thermocellus [22]
- (no species) [22]
- Human herpesvirus 1 [21]
- Epstein-barr virus (strain gd1) [21]
- Listeria innocua [21]
- Bacillus subtilis [21]
- Myxococcus xanthus [21]
- Dictyostelium discoideum [21]
- Chaetomium thermophilum [20]
- Enterovirus a [20]
- Aequorea victoria [20]
- Fusarium vanettenii [20]
- Dickeya dadantii [19]
- Porphyridium purpureum [19]
- Enterovirus d [19]
- Amanita phalloides [19]
- Chaetomium thermophilum [19]
- Xenopus tropicalis [19]
- Sus scrofa [19]
- Hepatitis b virus [18]
- Cypovirus 1 [18]
- Bacillus subtilis [18]
- Photorhabdus luminescens [18]
- Betacoronavirus 1 [18]
- Dengue virus [17]
- Kluyveromyces lactis [17]
- Pyrococcus horikoshii [17]
- Zika virus [17]
- Salmonella enterica [17]
- (no species) [17]
EM Method
- Single-particle [13741]
- Subtomogram averaging [1128]
- Tomography [701]
- Helical reconstruction [392]
- Electron Crystallography [7]
Resolution
- < 2Å [76]
- ≥ 2Å and < 3Å [3316]
- ≥ 3Å and < 4Å [6818]
- ≥ 4Å and < 5Å [1526]
- ≥ 5Å and < 6Å [316]
- ≥ 6Å and < 8Å [676]
- ≥ 8Å and < 12Å [532]
- ≥ 12Å and < 16Å [378]
- ≥ 16Å and < 20Å [370]
- ≥ 20Å and < 30Å [867]
- ≥ 30Å [441]
Model molecular weight
- 0-50 kDa [180]
- 50-100 kDa [781]
- 100-250 kDa [3354]
- 250-500 kDa [2909]
- 500-1000 kDa [1322]
- 1-2 MDa [497]
- 2-5 MDa [555]
- 5-10 MDa [157]
- > 10 MDa [78]
Release Date
- 2025 [3680]
- 2024 [3228]
- 2023 [2599]
- 2022 [2118]
- 2021 [1503]
- 2020 [1133]
- 2019 [697]
- 2018 [392]
- 2017 [226]
- 2016 [240]
- 2015 [118]
- 2014 [130]
- 2013 [149]
- 2012 [107]
- 2011 [46]
- 2010 [42]
- 2009 [42]
- 2008 [8]
- 2007 [38]
- 2006 [36]
- 2005 [6]
- 2004 [4]
- 2003 [10]
- 2002 [2]
Author by name
- Ward AB [982]
- Wang Y [645]
- Liu J [555]
- Zhang Y [508]
- Zhang X [456]
- Gao Y [419]
- Wang X [412]
- Liu Y [403]
- Ozorowski G [396]
- Li Y [381]
- Wang J [376]
- Li S [375]
- Zhang Z [366]
- Zhang J [350]
- Li Z [347]
- Torres JL [346]
- Cottrell CA [342]
- Burton DR [341]
- Li X [335]
- Zhang M [333]
- Wilson IA [326]
- Wang L [318]
- Liu L [312]
- Sanders RW [312]
- Ren G [308]
- Chen Y [295]
- Wang H [295]
- Li J [286]
- Li H [283]
- Jiang Y [279]
- Huang Y [267]
- Zhang L [266]
- Chen X [265]
- Zhang S [260]
- Kwong PD [249]
- Sewall LM [235]
- Skiniotis G [235]
- Zhao Y [230]
- Bustamante C [228]
- Wang Z [226]
- Zhang B [225]
- Diaz-celis C [224]
- Ashby PD [223]
- Celis CD [223]
- Chen Z [223]
- Liu JF [223]
- Tao J [223]
- Shi Y [221]
- Liu X [220]
- Montefiori DC [218]
- Wang C [217]
- Liu H [214]
- Van Gils Mj [213]
- Yang Y [209]
- Zheng Q [208]
- Lee WH [206]
- Chen L [205]
- Li D [201]
- Silvestri G [201]
- Zhang K [201]
- Wang Q [199]
- Crispin M [192]
- Li T [190]
- Papasergi-scott MM [188]
- Seven AB [188]
- Carnathan DG [187]
- Crotty S [187]
- Liu Z [187]
- Zhu X [187]
- Kobilka BK [186]
- Chen J [185]
- Copps J [183]
- He F [182]
- Panova O [182]
- Zhu Y [181]
- Schief WR [180]
- Baumeister W [179]
- Moore JP [179]
- Wang S [173]
- Yang H [173]
- Antanasijevic A [169]
- Allen JD [167]
- Xu J [167]
- Gmeiner P [165]
- Hilger D [165]
- Liu S [164]
- Turner HL [164]
- Yang X [163]
- Eskici G [161]
- Hildebrand PW [161]
- Yuan Q [161]
- Batebi H [160]
- Casiraghi M [160]
- Li L [160]
- Maul L [160]
- Perez-hernandez G [160]
- Sun H [159]
- Irvine DJ [157]
- Xia N [157]
- Li W [155]
Author by ORCID
- Ward AB [485]
- Ren G [306]
- Torres JL [298]
- Ozorowski G [256]
- Liu J [235]
- Zhang M [223]
- Tao J [223]
- Bustamante C [223]
- Cottrell CA [223]
- Ashby PD [223]
- Skiniotis G [219]
- Crispin M [192]
- Kwong PD [189]
- Burton DR [186]
- He F [182]
- Papasergi-scott MM [182]
- Gao Y [181]
- Kobilka BK [179]
- Allen JD [167]
- Hilger D [163]
- Van Gils Mj [163]
- Gmeiner P [162]
- Batebi H [160]
- Panova O [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Miotto MC [144]
- Copps J [138]
- Sanders RW [133]
- Crotty S [132]
- Zhang K [124]
- Zheng Q [122]
- Sewall LM [119]
- Mahamid J [118]
- Chai P [117]
- Weninger G [117]
- Hummer G [113]
- Lee WH [110]
- Schief WR [107]
- Hirst J [105]
- Raunser S [104]
- Du J [102]
- King NP [97]
- Wilson IA [97]
- Edwards RJ [96]
- Sobolevsky AI [95]
- Kotecha A [95]
- Georgeson E [94]
- Irvine DJ [94]
- Wronska A [93]
- Beck M [92]
- Cheng Y [90]
- Yuan M [90]
- Yin Z [89]
- Lee SY [86]
- Sok D [86]
- Baumeister W [85]
- Welsch S [85]
- Dridi H [83]
- Xia N [83]
- Lu W [82]
- Bridges HR [81]
- Li H [81]
- Nogal B [81]
- Borgnia MJ [81]
- Gao GF [81]
- Labranche C [81]
- Guo Q [81]
- Silvestri G [80]
- Blaza JN [79]
- Bjorkman PJ [78]
- Aricescu AR [78]
- Chiu W [77]
- Cramer P [76]
- Gao Y [76]
- Chung I [76]
- Liu J [76]
- Kanekiyo M [75]
- Bangaru S [75]
- Dutzler R [75]
- Li S [75]
- Chen L [75]
- Van Schooten J [74]
- Moore JP [73]
- Subramaniam S [73]
- Rappsilber J [72]
- Lee JH [72]
- Perrett HR [72]
- Marks AR [72]
- Plitzko JM [72]
- Xue L [72]
- Gorman J [70]
- Im W [69]
- Paulino C [68]
- Jackson AM [67]
- Malinauskas T [66]
- Montefiori D [66]
- Pollak MN [66]
- Zhao M [65]
- Itoh Y [65]
Journal
- NAT COMMUN [3199]
- NATURE [1516]
- TO BE PUBLISHED [1453]
- NAT STRUCT MOL BIOL [1013]
- PNAS [807]
- SCIENCE [803]
- CELL [777]
- BIORXIV [767]
- ELIFE [580]
- SCI ADV [568]
- MOL CELL [433]
- CELL REP [430]
- STRUCTURE [342]
- CELL RES [278]
- COMMUN BIOL [216]
- NUCLEIC ACIDS RES [211]
- EMBO J [185]
- PLOS PATHOG [183]
- NAT CHEM BIOL [176]
- CELL DISCOV [164]
- NAT MICROBIOL [162]
- J VIROL [144]
- IMMUNITY [139]
- SCI REP [131]
- J MOL BIOL [121]
- J BIOL CHEM [117]
- CELL HOST MICROBE [96]
- NPJ VACCINES [82]
- SCI TRANSL MED [82]
- ACTA CRYSTALLOGR D STRUCT BIOL [80]
- J STRUCT BIOL [70]
- EMBO REP [62]
- PROTEIN CELL [62]
- NAT METHODS [61]
- NEURON [61]
- J CELL BIOL [59]
- SCI IMMUNOL [59]
- J AM CHEM SOC [55]
- NAT PLANTS [51]
- MBIO [47]
- PLOS BIOL [46]
- DEV CELL [42]
- SIGNAL TRANSDUCT TARGET THER [38]
- PROTEIN SCI [37]
- ISCIENCE [36]
- J STRUCT BIOL X [32]
- VIRUSES [27]
- NAT CELL BIOL [25]
- PLOS ONE [24]
- FEBS J [22]
- IUCRJ [22]
- NAT IMMUNOL [22]
- J EXP MED [21]
- J.MOL.CELL.CARDIOL. [21]
- LIFE SCI ALLIANCE [21]
- ACS NANO [20]
- EMERG MICROBES INFECT [19]
- MOL MICROBIOL [19]
- MOL PLANT [18]
- FEBS LETT [17]
- FRONT MOL BIOSCI [17]
- BIOCHEM BIOPHYS RES COMMUN [16]
- CELL REP MED [16]
- ACTA NEUROPATHOL [15]
- BLOOD [15]
- FRONT IMMUNOL [15]
- NAT CATAL [15]
- ADV SCI [14]
- DRUG DISCOV TODAY [14]
- INT J BIOL MACROMOL [14]
- INT J MOL SCI [14]
- J MED CHEM [14]
- PNAS NEXUS [14]
- MOL BIOL CELL [12]
- NITRIC OXIDE [12]
- NPJ VIRUSES [12]
- SCI SIGNAL [12]
- BIOCHEMISTRY [11]
- BR.J.PHARMACOL. [11]
- RNA [11]
- STRUCTURE (LONDON, ENGLAND : 1993) [11]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [10]
- J BACTERIOL [10]
- J HEPATOL [10]
- NATL SCI REV [10]
- BIOCHIM BIOPHYS ACTA [9]
- CELL CHEM BIOL [9]
- GLIA [9]
- PLANT COMMUN. [9]
- ACS CHEM BIOL [8]
- ANGEW CHEM INT ED ENGL [8]
- J CLIN INV [8]
- MEDRXIV [8]
- NAT BIOTECHNOL [8]
- FEBS OPEN BIO [7]
- FRONT CELL INFECT MICROBIOL [7]
- GENES DEV [7]
- J GEN PHYSIOL [7]
- J LIPID RES [7]
- JCI INSIGHT [7]
Software
- CRYOSPARC [4047]
- RELION [3975]
- CTFFIND [667]
- GCTF [354]
- IMOD [346]
- SPIDER [344]
- WARP [182]
- CISTEM [134]
- CHIMERA [126]
- DYNAMO [96]
- COOT [93]
- EMAN2 [92]
- PEET [81]
- PYTOM [71]
- FREALIGN [65]
- EMAN [62]
- SPHIRE [56]
- CRYOLO [49]
- UCSF CHIMERA [41]
- NOVASTA [37]
- PHENIX [36]
- SPARX [34]
- STOPGAP [32]
- ETOMO [30]
- AV3 [29]
- JSPR [26]
- TOM [26]
- CTFPHASEFLIP [25]
- SPIDER, FREALIGN [25]
- NOVACTF [24]
- UCSF CHIMERAX [23]
- EMAN2, SPARX [22]
- IMAGIC [22]
- XMIPP [22]
- MATLAB [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- TOMO3D [19]
- IMOD, TOMO3D [18]
- IMOD, TOMO3D, PEET [18]
- MDFF [18]
- URO [18]
- EMCLARITY [14]
- EMFIT [14]
- CHIMERA, FLEX-EM [13]
- MPSA [12]
- MRC [12]
- SUBTOM [12]
- SITUS [11]
- TOMOCTF [10]
- I3 [9]
- SIMPLE [9]
- CTFFIND3 [8]
- EMIRA [8]
- IMOD, DYNAMO [8]
- ISOLDE [8]
- JSPR, EMAN2, EMAN [8]
- SPARX/EMAN2 [8]
- SPIDER, IMAGIC [8]
- EMAN1, EMAN2 [7]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [7]
- EMPFT EM3DR [7]
- IMIRS [7]
- IMOD, RAPTOR, PROTOMO [7]
- IPET [7]
- SPIDER PACKAGE [7]
- TOM TOOLBOX [7]
- AMIRAFPM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- CTFIND3 [6]
- DIREX [6]
- EMAN1 [6]
- EMAN2, FREALIGN [6]
- MOLREP, CHIMERA [6]
- PHOELIX [6]
- COMET [5]
- EMAN2, AND, SPARX [5]
- IMAGIC-5, SPIDER [5]
- AMIRA [4]
- BSOFT, PFT3DR [4]
- CHIMERA, CNS [4]
- CHIMERA, FLEXEM [4]
- CHIMERA, MDFF [4]
- CTFFIND4 [4]
- CTFFIND4, RELION [4]
- EM [4]
- EMAN, IMAGIC, SPIDER [4]
- IMAGIC, FREALIGN [4]
- IMAGIC, SPIDER, EMAN [4]
- IMOD AND BSOFT [4]
- J3DR [4]
- JSPR, EMAN, EMAN2 [4]
- PROTOMO [4]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [4]
- RELION, CTFFIND3 [4]
- RSREF2.0 [4]
- SPIDER, RELION [4]
- SPIDER,EMAN1.9 [4]
- SPRING [4]
- CHIMERA, REFMAC [3]
Microscope
- FEI TITAN KRIOS [9272]
- TFS KRIOS [2785]
- FEI TALOS ARCTICA [857]
- TFS GLACIOS [440]
- FEI TECNAI F20 [406]
- FEI POLARA 300 [327]
- FEI TECNAI SPIRIT [325]
- FEI TECNAI F30 [275]
- JEOL CRYO ARM 300 [200]
- FEI TITAN [198]
- FEI TECNAI ARCTICA [108]
- FEI TECNAI 12 [78]
- TFS TALOS [77]
- ZEISS LIBRA120PLUS [75]
- FEI TECNAI 20 [68]
- JEOL 3200FSC [62]
- TFS TALOS L120C [50]
- FEI/PHILIPS CM200FEG [47]
- FEI/PHILIPS EM420 [41]
- FEI/PHILIPS CM300FEG/T [36]
- JEOL 2200FS [28]
- JEOL 2100 [26]
- TFS TALOS F200C [23]
- JEOL 2010F [18]
- JEOL CRYO ARM 200 [16]
- FEI/PHILIPS CM120T [12]
- FEI/PHILIPS CM200FEG/ST [12]
- JEOL 3100FFC [12]
- JEOL 2100F [11]
- JEOL 4000EX [10]
- OTHER [10]
- JEOL 3000SFF [8]
- JEOL 3200FS [8]
- JEOL 1230 [6]
- FEI MORGAGNI [5]
- FEI TECNAI 10 [5]
- JEOL 1200EXII [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/HE [4]
- JEOL 1400 [4]
- TFS TITAN THEMIS [4]
- FEI/PHILIPS CM200T [3]
- JEOL 1200EX [3]
- JEOL KYOTO-3000SFF [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS CM300FEG/ST [1]
- HITACHI EF2000 [1]
- JEOL 2010UHR [1]
- JEOL 2011 [1]
Electron Source
- FIELD EMISSION GUN [15258]
- LAB6 [591]
- OTHER [75]
- TUNGSTEN HAIRPIN [45]
Film or detector model
- GATAN K3 6K X 4K [4130]
- GATAN K3 BIOQUANTUM 6K X 4K [3346]
- GATAN K2 SUMMIT 4K X 4K [3211]
- FEI FALCON IV 4K X 4K [1453]
- GATAN K2 QUANTUM 4K X 4K [754]
- FEI FALCON III 4K X 4K [665]
- TVIPS TEMCAM-F416 4K X 4K [324]
- FEI FALCON II 4K X 4K [286]
- TFS FALCON 4I 4K X 4K [267]
- GATAN ULTRASCAN 4000 4K X 4K [242]
- KODAK SO-163 FILM [228]
- FEI EAGLE 4K X 4K [184]
- FEI CETA 4K X 4K [179]
- GATAN K3 BIOCONTINUUM 6K X 4K [113]
- OTHER [101]
- GATAN K2 BASE 4K X 4K [92]
- GENERIC GATAN 4K X 4K [47]
- GATAN K2 4K X 4K [46]
- GATAN ULTRASCAN 1000 2K X 2K [42]
- GENERIC GATAN [27]
- GENERIC CCD [20]
- FEI FALCON I 4K X 4K [19]
- FEI EAGLE 2K X 2K [18]
- DIRECT ELECTRON DE-10 5K X 4K [16]
- TVIPS TEMCAM-F816 8K X 8K [14]
- TVIPS TEMCAM-F415 4K X 4K [12]
- DIRECT ELECTRON DE-16 4K X 4K [11]
- GENERIC TVIPS 4K X 4K [11]
- TVIPS TEMCAM-F216 2K X 2K [11]
- DIRECT ELECTRON APOLLO 4K X 4K [10]
- GATAN MULTISCAN [9]
- AGFA SCIENTA FILM [7]
- DIRECT ELECTRON DE-20 5K X 3K [7]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- TVIPS TEMCAM-F224 2K X 2K [4]
- GATAN K2 IS 4K X 4K [3]
- GATAN ORIUS SC200 2K X 2K [3]
- GENERIC FILM [3]
- DIRECT ELECTRON DE-12 4K X 3K [2]
- GATAN ULTRASCAN 10000 10K X 10K [1]
- GENERIC GATAN 2K X 2K [1]
- GENERIC TVIPS 2K X 2K [1]
EMPIAR Experiment type
- EMDB [545]
- FIB-SEM [17]
- SBF-SEM [13]
- SSET [4]
- EXCEPTION [3]
- ATUM-SEM [1]
- HARD X-RAY/X-RAY MICROCT [1]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [422]
- MICROGRAPHS - SINGLE FRAME [108]
- TILT SERIES [57]
- RECONSTRUCTED VOLUMES [33]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [22]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [21]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [7]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [5]
- CLASS AVERAGES [4]
- SUBTOMOGRAMS [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- SOFT X-RAY TOMOGRAMS [1]
External links
- UniProt [10372]
- PDB [9920]
- PDBe-Kb [9528]
- AlphaFold DB [8927]
- Pfam [8462]
- Gene Ontology [7843]
- InterPro [7601]
- ChEBI [6665]
- ChEMBL [6032]
- DrugBank [4965]
- Complex Portal [3284]
- EMPIAR [1279]
- EMDB [544]
- SCOP2 [159]
- CATH [91]
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8vxw
Q-score: 0.347
Schirra RT, Dos Santos NFB, Ganser-Pornillos BK, Pornillos O
Viruses (2024) 16 [ Pubmed: 39066201 DOI: doi:10.3390/v16071038 ]
Low YS, Roche SG, Aleksandrova NA, Foley G, Low JK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Boden M, Hurst MR, Piper SJ, Landsberg MJ
Nat Commun (2025) 16 pp. 11121-11121 [ DOI: doi:10.1038/s41467-025-66050-x Pubmed: 41397958 ]
Resolution: 6.43 Å
EM Method: Single-particle
Fitted PDBs: 9cbc
Q-score: 0.264
Low YS, Roche SG, Aleksandrova NA, Foley G, Low JK, Box JK, Croll TI, Chassagnon IR, Lott JS, Deplazes E, Boden M, Hurst MR, Piper SJ, Landsberg MJ
Nat Commun (2025) 16 pp. 11121-11121 [ DOI: doi:10.1038/s41467-025-66050-x Pubmed: 41397958 ]
Resolution: 2.31 Å
EM Method: Single-particle
Tan X, Swartz KJ
To Be Published
Resolution: 2.35 Å
EM Method: Single-particle
Tan X, Swartz KJ
To Be Published
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 9npr
Q-score: 0.334
Bu F, Ye G, Liu B, Li F
To Be Published
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9npt
Q-score: 0.48
Ye G, Bu F, Liu B, Li F
To Be Published
Maestro-Lopez M, Cheng TC, Muntaner J, Menendez M, Alonso M, Schweitzer A, Cuellar J, Valpuesta JM, Sakata E
To Be Published
Maestgro-Lopez M, Cheng TC, Muntaner J, Menendez M, Alonso M, Schweitzer A, Cuellar J, Valpuesta JM, Sakata E
To Be Published
Maestro-Lopez M, Cheng TC, Muntaner J, Menendez M, Alonso M, Schweitzer A, Cuellar J, Valpuesta JM, Sakata E
To Be Published
Filter By
Current Database
- EMDB [15969]
- EMPIAR [585]
Current status
- REL [16554]
Sample type
- Complex [13423]
- Protein [11335]
- Ligand [7160]
- RNA [1023]
- Sample [840]
- Cellular component [779]
- Virus [726]
- DNA [713]
- Cell [681]
- Other [46]
- Tissue [45]
Organism
- Homo sapiens [6381]
- Mus musculus [1466]
- Severe acute respiratory syndrome coronavirus [1266]
- Escherichia coli [797]
- Synthetic construct [770]
- Saccharomyces cerevisiae [677]
- Human immunodeficiency virus 1 [581]
- Rattus norvegicus [526]
- Oryctolagus cuniculus [428]
- Bos taurus [339]
- Xenopus laevis [328]
- Macaca mulatta [310]
- Escherichia coli [301]
- Lama glama [278]
- Sus scrofa [257]
- Saccharomyces cerevisiae [172]
- Arabidopsis thaliana [165]
- Influenza a virus [152]
- Chlamydomonas reinhardtii [121]
- Danio rerio [86]
- Drosophila melanogaster [83]
- Gallus gallus [79]
- Vicugna pacos [74]
- Mycoplasma pneumoniae [72]
- Mycolicibacterium smegmatis [67]
- Escherichia coli [59]
- Staphylococcus aureus [53]
- Human cytomegalovirus [52]
- Plasmodium falciparum [52]
- Plasmodium falciparum [48]
- Human immunodeficiency virus [47]
- Mycobacterium tuberculosis [47]
- (no species) [42]
- Middle east respiratory syndrome-related coronavirus [42]
- Severe acute respiratory syndrome coronavirus [42]
- Enterobacteria phage t4 [41]
- Thermus thermophilus [41]
- Monkeypox virus [40]
- Synechocystis sp. pcc 6803 [40]
- Schizosaccharomyces pombe [40]
- (no species) [39]
- Zaire ebolavirus [38]
- Eastern equine encephalitis virus [37]
- Thermotoga maritima [36]
- Mycobacterium tuberculosis [36]
- Human herpesvirus 1 [35]
- Chikungunya virus [35]
- Macaca fascicularis [35]
- Caenorhabditis elegans [34]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [34]
- Strongylocentrotus purpuratus [33]
- Anthocerotibacter panamensis [32]
- Human coronavirus hku1 [32]
- Salmonella enterica [32]
- Pseudomonas aeruginosa [30]
- Western equine encephalitis virus [29]
- Thermococcus profundus [29]
- Tetrahymena thermophila [29]
- Vibrio cholerae [29]
- Escherichia virus t7 [28]
- Canis lupus [28]
- Thermus thermophilus [27]
- Candidatus arthromitus sp. sfb-mouse-nl [26]
- Semliki forest virus [25]
- Enterovirus b [25]
- Rotavirus a [24]
- (no species) [23]
- Adeno-associated virus [23]
- Candida albicans [23]
- Simian immunodeficiency virus [22]
- Acetivibrio thermocellus [22]
- (no species) [22]
- Human herpesvirus 1 [21]
- Epstein-barr virus (strain gd1) [21]
- Listeria innocua [21]
- Bacillus subtilis [21]
- Myxococcus xanthus [21]
- Dictyostelium discoideum [21]
- Chaetomium thermophilum [20]
- Enterovirus a [20]
- Aequorea victoria [20]
- Fusarium vanettenii [20]
- Dickeya dadantii [19]
- Porphyridium purpureum [19]
- Enterovirus d [19]
- Amanita phalloides [19]
- Chaetomium thermophilum [19]
- Xenopus tropicalis [19]
- Sus scrofa [19]
- Hepatitis b virus [18]
- Cypovirus 1 [18]
- Bacillus subtilis [18]
- Photorhabdus luminescens [18]
- Betacoronavirus 1 [18]
- Dengue virus [17]
- Kluyveromyces lactis [17]
- Pyrococcus horikoshii [17]
- Zika virus [17]
- Salmonella enterica [17]
- (no species) [17]
EM Method
- Single-particle [13741]
- Subtomogram averaging [1128]
- Tomography [701]
- Helical reconstruction [392]
- Electron Crystallography [7]
Resolution
- < 2Å [76]
- ≥ 2Å and < 3Å [3316]
- ≥ 3Å and < 4Å [6818]
- ≥ 4Å and < 5Å [1526]
- ≥ 5Å and < 6Å [316]
- ≥ 6Å and < 8Å [676]
- ≥ 8Å and < 12Å [532]
- ≥ 12Å and < 16Å [378]
- ≥ 16Å and < 20Å [370]
- ≥ 20Å and < 30Å [867]
- ≥ 30Å [441]
Model molecular weight
- 0-50 kDa [180]
- 50-100 kDa [781]
- 100-250 kDa [3354]
- 250-500 kDa [2909]
- 500-1000 kDa [1322]
- 1-2 MDa [497]
- 2-5 MDa [555]
- 5-10 MDa [157]
- > 10 MDa [78]
Release Date
- 2025 [3680]
- 2024 [3228]
- 2023 [2599]
- 2022 [2118]
- 2021 [1503]
- 2020 [1133]
- 2019 [697]
- 2018 [392]
- 2017 [226]
- 2016 [240]
- 2015 [118]
- 2014 [130]
- 2013 [149]
- 2012 [107]
- 2011 [46]
- 2010 [42]
- 2009 [42]
- 2008 [8]
- 2007 [38]
- 2006 [36]
- 2005 [6]
- 2004 [4]
- 2003 [10]
- 2002 [2]
Author by name
- Ward AB [982]
- Wang Y [645]
- Liu J [555]
- Zhang Y [508]
- Zhang X [456]
- Gao Y [419]
- Wang X [412]
- Liu Y [403]
- Ozorowski G [396]
- Li Y [381]
- Wang J [376]
- Li S [375]
- Zhang Z [366]
- Zhang J [350]
- Li Z [347]
- Torres JL [346]
- Cottrell CA [342]
- Burton DR [341]
- Li X [335]
- Zhang M [333]
- Wilson IA [326]
- Wang L [318]
- Liu L [312]
- Sanders RW [312]
- Ren G [308]
- Chen Y [295]
- Wang H [295]
- Li J [286]
- Li H [283]
- Jiang Y [279]
- Huang Y [267]
- Zhang L [266]
- Chen X [265]
- Zhang S [260]
- Kwong PD [249]
- Sewall LM [235]
- Skiniotis G [235]
- Zhao Y [230]
- Bustamante C [228]
- Wang Z [226]
- Zhang B [225]
- Diaz-celis C [224]
- Ashby PD [223]
- Celis CD [223]
- Chen Z [223]
- Liu JF [223]
- Tao J [223]
- Shi Y [221]
- Liu X [220]
- Montefiori DC [218]
- Wang C [217]
- Liu H [214]
- Van Gils Mj [213]
- Yang Y [209]
- Zheng Q [208]
- Lee WH [206]
- Chen L [205]
- Li D [201]
- Silvestri G [201]
- Zhang K [201]
- Wang Q [199]
- Crispin M [192]
- Li T [190]
- Papasergi-scott MM [188]
- Seven AB [188]
- Carnathan DG [187]
- Crotty S [187]
- Liu Z [187]
- Zhu X [187]
- Kobilka BK [186]
- Chen J [185]
- Copps J [183]
- He F [182]
- Panova O [182]
- Zhu Y [181]
- Schief WR [180]
- Baumeister W [179]
- Moore JP [179]
- Wang S [173]
- Yang H [173]
- Antanasijevic A [169]
- Allen JD [167]
- Xu J [167]
- Gmeiner P [165]
- Hilger D [165]
- Liu S [164]
- Turner HL [164]
- Yang X [163]
- Eskici G [161]
- Hildebrand PW [161]
- Yuan Q [161]
- Batebi H [160]
- Casiraghi M [160]
- Li L [160]
- Maul L [160]
- Perez-hernandez G [160]
- Sun H [159]
- Irvine DJ [157]
- Xia N [157]
- Li W [155]
Author by ORCID
- Ward AB [485]
- Ren G [306]
- Torres JL [298]
- Ozorowski G [256]
- Liu J [235]
- Zhang M [223]
- Tao J [223]
- Bustamante C [223]
- Cottrell CA [223]
- Ashby PD [223]
- Skiniotis G [219]
- Crispin M [192]
- Kwong PD [189]
- Burton DR [186]
- He F [182]
- Papasergi-scott MM [182]
- Gao Y [181]
- Kobilka BK [179]
- Allen JD [167]
- Hilger D [163]
- Van Gils Mj [163]
- Gmeiner P [162]
- Batebi H [160]
- Panova O [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Miotto MC [144]
- Copps J [138]
- Sanders RW [133]
- Crotty S [132]
- Zhang K [124]
- Zheng Q [122]
- Sewall LM [119]
- Mahamid J [118]
- Chai P [117]
- Weninger G [117]
- Hummer G [113]
- Lee WH [110]
- Schief WR [107]
- Hirst J [105]
- Raunser S [104]
- Du J [102]
- King NP [97]
- Wilson IA [97]
- Edwards RJ [96]
- Sobolevsky AI [95]
- Kotecha A [95]
- Georgeson E [94]
- Irvine DJ [94]
- Wronska A [93]
- Beck M [92]
- Cheng Y [90]
- Yuan M [90]
- Yin Z [89]
- Lee SY [86]
- Sok D [86]
- Baumeister W [85]
- Welsch S [85]
- Dridi H [83]
- Xia N [83]
- Lu W [82]
- Bridges HR [81]
- Li H [81]
- Nogal B [81]
- Borgnia MJ [81]
- Gao GF [81]
- Labranche C [81]
- Guo Q [81]
- Silvestri G [80]
- Blaza JN [79]
- Bjorkman PJ [78]
- Aricescu AR [78]
- Chiu W [77]
- Cramer P [76]
- Gao Y [76]
- Chung I [76]
- Liu J [76]
- Kanekiyo M [75]
- Bangaru S [75]
- Dutzler R [75]
- Li S [75]
- Chen L [75]
- Van Schooten J [74]
- Moore JP [73]
- Subramaniam S [73]
- Rappsilber J [72]
- Lee JH [72]
- Perrett HR [72]
- Marks AR [72]
- Plitzko JM [72]
- Xue L [72]
- Gorman J [70]
- Im W [69]
- Paulino C [68]
- Jackson AM [67]
- Malinauskas T [66]
- Montefiori D [66]
- Pollak MN [66]
- Zhao M [65]
- Itoh Y [65]
Journal
- NAT COMMUN [3199]
- NATURE [1516]
- TO BE PUBLISHED [1453]
- NAT STRUCT MOL BIOL [1013]
- PNAS [807]
- SCIENCE [803]
- CELL [777]
- BIORXIV [767]
- ELIFE [580]
- SCI ADV [568]
- MOL CELL [433]
- CELL REP [430]
- STRUCTURE [342]
- CELL RES [278]
- COMMUN BIOL [216]
- NUCLEIC ACIDS RES [211]
- EMBO J [185]
- PLOS PATHOG [183]
- NAT CHEM BIOL [176]
- CELL DISCOV [164]
- NAT MICROBIOL [162]
- J VIROL [144]
- IMMUNITY [139]
- SCI REP [131]
- J MOL BIOL [121]
- J BIOL CHEM [117]
- CELL HOST MICROBE [96]
- NPJ VACCINES [82]
- SCI TRANSL MED [82]
- ACTA CRYSTALLOGR D STRUCT BIOL [80]
- J STRUCT BIOL [70]
- EMBO REP [62]
- PROTEIN CELL [62]
- NAT METHODS [61]
- NEURON [61]
- J CELL BIOL [59]
- SCI IMMUNOL [59]
- J AM CHEM SOC [55]
- NAT PLANTS [51]
- MBIO [47]
- PLOS BIOL [46]
- DEV CELL [42]
- SIGNAL TRANSDUCT TARGET THER [38]
- PROTEIN SCI [37]
- ISCIENCE [36]
- J STRUCT BIOL X [32]
- VIRUSES [27]
- NAT CELL BIOL [25]
- PLOS ONE [24]
- FEBS J [22]
- IUCRJ [22]
- NAT IMMUNOL [22]
- J EXP MED [21]
- J.MOL.CELL.CARDIOL. [21]
- LIFE SCI ALLIANCE [21]
- ACS NANO [20]
- EMERG MICROBES INFECT [19]
- MOL MICROBIOL [19]
- MOL PLANT [18]
- FEBS LETT [17]
- FRONT MOL BIOSCI [17]
- BIOCHEM BIOPHYS RES COMMUN [16]
- CELL REP MED [16]
- ACTA NEUROPATHOL [15]
- BLOOD [15]
- FRONT IMMUNOL [15]
- NAT CATAL [15]
- ADV SCI [14]
- DRUG DISCOV TODAY [14]
- INT J BIOL MACROMOL [14]
- INT J MOL SCI [14]
- J MED CHEM [14]
- PNAS NEXUS [14]
- MOL BIOL CELL [12]
- NITRIC OXIDE [12]
- NPJ VIRUSES [12]
- SCI SIGNAL [12]
- BIOCHEMISTRY [11]
- BR.J.PHARMACOL. [11]
- RNA [11]
- STRUCTURE (LONDON, ENGLAND : 1993) [11]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [10]
- J BACTERIOL [10]
- J HEPATOL [10]
- NATL SCI REV [10]
- BIOCHIM BIOPHYS ACTA [9]
- CELL CHEM BIOL [9]
- GLIA [9]
- PLANT COMMUN. [9]
- ACS CHEM BIOL [8]
- ANGEW CHEM INT ED ENGL [8]
- J CLIN INV [8]
- MEDRXIV [8]
- NAT BIOTECHNOL [8]
- FEBS OPEN BIO [7]
- FRONT CELL INFECT MICROBIOL [7]
- GENES DEV [7]
- J GEN PHYSIOL [7]
- J LIPID RES [7]
- JCI INSIGHT [7]
Software
- CRYOSPARC [4047]
- RELION [3975]
- CTFFIND [667]
- GCTF [354]
- IMOD [346]
- SPIDER [344]
- WARP [182]
- CISTEM [134]
- CHIMERA [126]
- DYNAMO [96]
- COOT [93]
- EMAN2 [92]
- PEET [81]
- PYTOM [71]
- FREALIGN [65]
- EMAN [62]
- SPHIRE [56]
- CRYOLO [49]
- UCSF CHIMERA [41]
- NOVASTA [37]
- PHENIX [36]
- SPARX [34]
- STOPGAP [32]
- ETOMO [30]
- AV3 [29]
- JSPR [26]
- TOM [26]
- CTFPHASEFLIP [25]
- SPIDER, FREALIGN [25]
- NOVACTF [24]
- UCSF CHIMERAX [23]
- EMAN2, SPARX [22]
- IMAGIC [22]
- XMIPP [22]
- MATLAB [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- TOMO3D [19]
- IMOD, TOMO3D [18]
- IMOD, TOMO3D, PEET [18]
- MDFF [18]
- URO [18]
- EMCLARITY [14]
- EMFIT [14]
- CHIMERA, FLEX-EM [13]
- MPSA [12]
- MRC [12]
- SUBTOM [12]
- SITUS [11]
- TOMOCTF [10]
- I3 [9]
- SIMPLE [9]
- CTFFIND3 [8]
- EMIRA [8]
- IMOD, DYNAMO [8]
- ISOLDE [8]
- JSPR, EMAN2, EMAN [8]
- SPARX/EMAN2 [8]
- SPIDER, IMAGIC [8]
- EMAN1, EMAN2 [7]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [7]
- EMPFT EM3DR [7]
- IMIRS [7]
- IMOD, RAPTOR, PROTOMO [7]
- IPET [7]
- SPIDER PACKAGE [7]
- TOM TOOLBOX [7]
- AMIRAFPM [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- CTFIND3 [6]
- DIREX [6]
- EMAN1 [6]
- EMAN2, FREALIGN [6]
- MOLREP, CHIMERA [6]
- PHOELIX [6]
- COMET [5]
- EMAN2, AND, SPARX [5]
- IMAGIC-5, SPIDER [5]
- AMIRA [4]
- BSOFT, PFT3DR [4]
- CHIMERA, CNS [4]
- CHIMERA, FLEXEM [4]
- CHIMERA, MDFF [4]
- CTFFIND4 [4]
- CTFFIND4, RELION [4]
- EM [4]
- EMAN, IMAGIC, SPIDER [4]
- IMAGIC, FREALIGN [4]
- IMAGIC, SPIDER, EMAN [4]
- IMOD AND BSOFT [4]
- J3DR [4]
- JSPR, EMAN, EMAN2 [4]
- PROTOMO [4]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [4]
- RELION, CTFFIND3 [4]
- RSREF2.0 [4]
- SPIDER, RELION [4]
- SPIDER,EMAN1.9 [4]
- SPRING [4]
- CHIMERA, REFMAC [3]
Microscope
- FEI TITAN KRIOS [9272]
- TFS KRIOS [2785]
- FEI TALOS ARCTICA [857]
- TFS GLACIOS [440]
- FEI TECNAI F20 [406]
- FEI POLARA 300 [327]
- FEI TECNAI SPIRIT [325]
- FEI TECNAI F30 [275]
- JEOL CRYO ARM 300 [200]
- FEI TITAN [198]
- FEI TECNAI ARCTICA [108]
- FEI TECNAI 12 [78]
- TFS TALOS [77]
- ZEISS LIBRA120PLUS [75]
- FEI TECNAI 20 [68]
- JEOL 3200FSC [62]
- TFS TALOS L120C [50]
- FEI/PHILIPS CM200FEG [47]
- FEI/PHILIPS EM420 [41]
- FEI/PHILIPS CM300FEG/T [36]
- JEOL 2200FS [28]
- JEOL 2100 [26]
- TFS TALOS F200C [23]
- JEOL 2010F [18]
- JEOL CRYO ARM 200 [16]
- FEI/PHILIPS CM120T [12]
- FEI/PHILIPS CM200FEG/ST [12]
- JEOL 3100FFC [12]
- JEOL 2100F [11]
- JEOL 4000EX [10]
- OTHER [10]
- JEOL 3000SFF [8]
- JEOL 3200FS [8]
- JEOL 1230 [6]
- FEI MORGAGNI [5]
- FEI TECNAI 10 [5]
- JEOL 1200EXII [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/HE [4]
- JEOL 1400 [4]
- TFS TITAN THEMIS [4]
- FEI/PHILIPS CM200T [3]
- JEOL 1200EX [3]
- JEOL KYOTO-3000SFF [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS CM300FEG/ST [1]
- HITACHI EF2000 [1]
- JEOL 2010UHR [1]
- JEOL 2011 [1]
Electron Source
- FIELD EMISSION GUN [15258]
- LAB6 [591]
- OTHER [75]
- TUNGSTEN HAIRPIN [45]
Film or detector model
- GATAN K3 6K X 4K [4130]
- GATAN K3 BIOQUANTUM 6K X 4K [3346]
- GATAN K2 SUMMIT 4K X 4K [3211]
- FEI FALCON IV 4K X 4K [1453]
- GATAN K2 QUANTUM 4K X 4K [754]
- FEI FALCON III 4K X 4K [665]
- TVIPS TEMCAM-F416 4K X 4K [324]
- FEI FALCON II 4K X 4K [286]
- TFS FALCON 4I 4K X 4K [267]
- GATAN ULTRASCAN 4000 4K X 4K [242]
- KODAK SO-163 FILM [228]
- FEI EAGLE 4K X 4K [184]
- FEI CETA 4K X 4K [179]
- GATAN K3 BIOCONTINUUM 6K X 4K [113]
- OTHER [101]
- GATAN K2 BASE 4K X 4K [92]
- GENERIC GATAN 4K X 4K [47]
- GATAN K2 4K X 4K [46]
- GATAN ULTRASCAN 1000 2K X 2K [42]
- GENERIC GATAN [27]
- GENERIC CCD [20]
- FEI FALCON I 4K X 4K [19]
- FEI EAGLE 2K X 2K [18]
- DIRECT ELECTRON DE-10 5K X 4K [16]
- TVIPS TEMCAM-F816 8K X 8K [14]
- TVIPS TEMCAM-F415 4K X 4K [12]
- DIRECT ELECTRON DE-16 4K X 4K [11]
- GENERIC TVIPS 4K X 4K [11]
- TVIPS TEMCAM-F216 2K X 2K [11]
- DIRECT ELECTRON APOLLO 4K X 4K [10]
- GATAN MULTISCAN [9]
- AGFA SCIENTA FILM [7]
- DIRECT ELECTRON DE-20 5K X 3K [7]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- TVIPS TEMCAM-F224 2K X 2K [4]
- GATAN K2 IS 4K X 4K [3]
- GATAN ORIUS SC200 2K X 2K [3]
- GENERIC FILM [3]
- DIRECT ELECTRON DE-12 4K X 3K [2]
- GATAN ULTRASCAN 10000 10K X 10K [1]
- GENERIC GATAN 2K X 2K [1]
- GENERIC TVIPS 2K X 2K [1]
EMPIAR Experiment type
- EMDB [545]
- FIB-SEM [17]
- SBF-SEM [13]
- SSET [4]
- EXCEPTION [3]
- ATUM-SEM [1]
- HARD X-RAY/X-RAY MICROCT [1]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [422]
- MICROGRAPHS - SINGLE FRAME [108]
- TILT SERIES [57]
- RECONSTRUCTED VOLUMES [33]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [22]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [21]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [7]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [5]
- CLASS AVERAGES [4]
- SUBTOMOGRAMS [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- SOFT X-RAY TOMOGRAMS [1]
External links
- UniProt [10372]
- PDB [9920]
- PDBe-Kb [9528]
- AlphaFold DB [8927]
- Pfam [8462]
- Gene Ontology [7843]
- InterPro [7601]
- ChEBI [6665]
- ChEMBL [6032]
- DrugBank [4965]
- Complex Portal [3284]
- EMPIAR [1279]
- EMDB [544]
- SCOP2 [159]
- CATH [91]
