Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [110]
Parengyodontium album [54]
Synthetic construct [49]
Mus musculus [25]
Severe acute respiratory syndrome coronavirus [17]
Saccharomyces cerevisiae [17]
Human immunodeficiency virus 1 [15]
Saccharomyces cerevisiae [13]
Escherichia coli [11]
Lactococcus lactis [10]
Rattus norvegicus [9]
Xenopus laevis [9]
Gallus gallus [9]
Chaetomium thermophilum [7]
Oryctolagus cuniculus [7]
Chaetomium thermophilum [6]
Escherichia coli [6]
Salmonella enterica [5]
Sus scrofa [5]
Glycine max [4]
Salmonella enterica [4]
Caenorhabditis elegans [4]
Bos taurus [4]
(no species) [3]
Desulfofustis sp. pb-srb1 [3]
Methanosarcina mazei [3]
Vibrio parahaemolyticus [3]
Deinococcus radiodurans [3]
Avian orthoavulavirus 1 [3]
Metagenome [3]
Vicugna pacos [3]
Methanococcus maripaludis [3]
Escherichia coli [3]
Toxoplasma gondii [3]
Rhodomonas salina [3]
Aeropyrum pernix [3]
Lama glama [3]
Endosymbiont of tevnia jerichonana [2]
Eastern equine encephalitis virus [2]
Streptococcus thermophilus [2]
Bacillus cereus [2]
Methanosarcina mazei [2]
Henipavirus hendraense [2]
Nipah virus [2]
Amycolatopsis orientalis [2]
Pichia kudriavzevii [2]
Tetrahymena thermophila [2]
Aequorea victoria [2]
Drosophila melanogaster [2]
Escherichia coli [2]
Bacillus cereus [1]
Bacillus phage phi3t [1]
Phytophthora sojae [1]
(no species) [1]
Synechococcus elongatus [1]
Synechocystis sp. pcc 6803 [1]
Rift valley fever phlebovirus [1]
Pseudomonas plecoglossicida [1]
Vibrio cholerae [1]
Staphylococcus aureus [1]
Respiratory syncytial virus [1]
Candidatus methanomethylophilus alvus [1]
Streptococcus pyogenes [1]
Bacillus thermoproteolyticus [1]
Salmonella enterica [1]
Streptomyces azureus [1]
Hathewaya histolytica [1]
Streptomyces rubiginosus [1]
Human respiratory syncytial virus [1]
Staphylococcaceae bacterium [1]
Streptococcus phage vb_sths-va214 [1]
Aquifex aeolicus [1]
Sulfolobus acidocaldarius [1]
Desulfacinum sp. [1]
Sulfolobus turreted icosahedral virus 1 [1]
Mycoplasma pneumoniae [1]
Pseudomonas aeruginosa [1]
Severe acute respiratory syndrome coronavirus [1]
Angavokely henipavirus [1]
Euglena gracilis [1]
Chlamydomonas reinhardtii [1]
Pseudomonas syringae [1]
Plasmodium falciparum [1]
Arabidopsis thaliana [1]
Toxoplasma gondii [1]
Myodes glareolus [1]
Thaumatococcus daniellii [1]
(no species) [1]
Hypocrea jecorina [1]
Thermococcus onnurineus [1]
Trypanosoma brucei [1]
Vairimorpha necatrix [1]
Shigella flexneri [1]
Cydia pomonella granulosis virus [1]
Vibrio parahaemolyticus [1]
Pseudomonas plecoglossicida [1]
(no species) [1]
Spodoptera frugiperda [1]
Leptotrichia wadei [1]
In vitro transcription vector pt7-tp(deltai) [1]

EM Method

Resolution

Release Date

Author by name

Gonen T [133]
Hattne J [106]
Martynowycz MW [93]
Rodriguez JA [52]
Shi D [47]
Clabbers MTB [33]
Briggs JAG [29]
Sawaya MR [29]
Cascio D [28]
Kovtun O [28]
Zee CT [27]
Li X [26]
Gallagher-jones M [25]
Glynn C [25]
Owen DJ [25]
Eisenberg DS [20]
Reyes FE [18]
Unge J [17]
Leneva N [16]
Nannenga BL [14]
Li M [13]
Zhang J [13]
Zhao W [13]
Chen Z [12]
Guo C [12]
He Y [12]
Jensen GJ [12]
Li H [12]
Rodriguez J [12]
Zhang X [12]
Zhou H [12]
Asturias F [11]
Eisenberg D [11]
Fulton TJ [11]
Gao X [11]
Hutchings J [11]
Iqbal N [11]
Jones CG [11]
Kvaratskhelia M [11]
Nelson HM [11]
Qian Y [11]
Stoltz BM [11]
Tang L [11]
Wang C [11]
Wang N [11]
Xia R [11]
Xu Z [11]
Zhang A [11]
Boyer DR [10]
Chao WCH [10]
Choi PH [10]
Dong S [10]
Fulton T [10]
Gil D [10]
Gil-carton D [10]
He J [10]
Lazaro M [10]
Liang J [10]
Lopez-alonso JP [10]
Morado DR [10]
Rasheed N [10]
Seidler P [10]
Tong L [10]
Valle M [10]
Wang M [10]
Zanetti G [10]
Zhou N [10]
Ariotti N [9]
Brasch J [9]
Bykov YS [9]
Carragher B [9]
Collins BM [9]
Dickson VK [9]
Engel BD [9]
Honig B [9]
Howard RJ [9]
Kelly BT [9]
Liu Z [9]
Noble AJ [9]
Potter CS [9]
Schaffer M [9]
Shapiro L [9]
Teasdale RD [9]
Yin H [9]
Zhu X [9]
De La Cruz Mj [9]
Calero G [8]
Hinck AP [8]
Hinck CS [8]
Jia LN [8]
Kim SK [8]
Liu C [8]
Nicolas WJ [8]
Shiriaeva A [8]
Weiss SC [8]
Xiong C [8]
Xiong WX [8]
Zhang Y [8]
Zhou D [8]
Guan J [7]

Journal

NAT COMMUN [71]
TO BE PUBLISHED [42]
STRUCTURE [39]
PNAS [36]
NATURE [21]
BIORXIV [17]
SCI ADV [16]
ELIFE [15]
NAT STRUCT MOL BIOL [14]
NAT METHODS [13]
CELL RES [12]
ACS CENT SCI [11]
CELL REP [9]
NUCLEIC ACIDS RES [8]
J STRUCT BIOL X [7]
NAT CHEM BIOL [7]
J AM CHEM SOC [6]
PLOS PATHOG [6]
SIGNAL TRANSDUCT TARGET THER [6]
IUCRJ [5]
J STRUCT BIOL [5]
ANAL CHEM [4]
CELL [4]
J BIOL CHEM [4]
JCI INSIGHT [4]
MOL CELL [4]
ACTA CRYSTALLOGR D STRUCT BIOL [3]
COMMUN BIOL [3]
EMBO J [3]
MBIO [3]
SCI REP [3]
SCIENCE [3]
ADV SCI [2]
ANGEW CHEM INT ED ENGL [2]
BR.J.PHARMACOL. [2]
INT J MOL SCI [2]
J NANOBIOTECHNOLOGY [2]
MOL BRAIN [2]
NAT CHEM [2]
STRUCT DYN. [2]
BIOMOLECULES [1]
CCS CHEM [1]
CELL.MOL.LIFE SCI. [1]
FEBS LETT [1]
FRONT CELL DEV BIOL [1]
INT J BIOL MACROMOL [1]
J APPL CRYSTALLOGR [1]
J MOL BIOL [1]
J VIROL [1]
MED COMM (BEIJING) [1]
MEDCOMM (2020) [1]
MOL CELLS [1]
NANOTECHNOL RUSSIA [1]
NAT MICROBIOL [1]
PLOS BIOL [1]
SCI BULL (BEIJING) [1]

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 422. Page 1 of 43

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EMD-67611

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Structural and Functional Insights into VEGFR-3-Mediated Lymphangiogenesis : Unraveling the clustering mechanism of VEGFR-3/VEGF-C

CryoEM

Release date: Sept. 30, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 21ei

Q-score: 0.411
Similar entry percentile: 28%

Cho R, Ahn J, Yang J, Lee DS, Hong G, Lee S, Kim HM

Adv Sci (2026) pp. e77728-e77728 [ Pubmed: 42717534 DOI: doi:10.1002/advs.77728 ]

EMD-67618

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Structural and Functional Insights into VEGFR-3-Mediated Lymphangiogenesis : Unraveling the clustering mechanism of VEGFR-3/VEGF-C

CryoEM

Release date: Sept. 30, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 21es

Q-score: 0.247
Similar entry percentile: 3%

Cho R, Ahn J, Yang J, Lee DS, Hong G, Lee S, Kim HM

Adv Sci (2026) pp. e77728-e77728 [ Pubmed: 42717534 DOI: doi:10.1002/advs.77728 ]

EMD-54916

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Prefusion-stabilized Hendra virus fusion protein in complex with inhibitory nanobody F123

CryoEM

Release date: Sept. 9, 2026
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 9shv

Q-score: 0.634
Similar entry percentile: 97%

Kralova A, Hanke L

To Be Published

EMD-54918

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Prefusion-stabilized Nipah virus fusion protein in complex with inhibitory nanobody F112

CryoEM

Release date: Sept. 9, 2026
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 9shw

Q-score: 0.64
Similar entry percentile: 96%

Kralova A, Hanke L

To Be Published

EMD-55261

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cryo-EM structure of LwHicAB-crRNA

CryoEM

Release date: Sept. 9, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9svk

Q-score: 0.486
Similar entry percentile: 68%

Chen J, Huang L, Chen H, Li X, Lin X, Guo C, Liu X, Fu G, Chen Y, Liu L

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74930-z Pubmed: 42362581 ]

EMD-54813

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Prefusion-stabilized Hendra virus fusion protein in complex with inhibitory nanobody F130

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9sf4

Q-score: 0.639
Similar entry percentile: 92%

Kralova A, Hanke L

To Be Published

EMD-55589

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Structure of mouse full-length LRRC8D

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9t5m

Q-score: 0.35
Similar entry percentile: 7%

Lehmann EF, Stierli F, Rutz S, Deneka D, Dutzler R

Nat Commun (2026) 17 [ Pubmed: 42754598 DOI: doi:10.1038/s41467-026-77508-x ]

EMD-49696

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Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles

CryoEM

Release date: Aug. 19, 2026
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9nqy

Q-score: 0.191
Similar entry percentile: 70%

Upadhye VV, Lee JF, Ercanli N, Ricana C, Hinsley AC, Obr M, Autin L, Schur FKM, Aguilar HC, Dick RA

bioRxiv (2026) [ Pubmed: 42523209 DOI: doi:10.64898/2026.07.16.738223 ]

EMD-48783

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Structure of proteinase K from energy-filtered MicroED data using a 5 eV slit width

CryoEM

Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0f

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

J Struct Biol X (2026) 14 pp. 100158-100158 [ DOI: doi:10.1016/j.yjsbx.2026.100158 Pubmed: 42667085 ]

EMD-48784

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Structure of proteinase K from energy-filtered MicroED data using a 10 eV slit width

CryoEM

Release date: July 29, 2026
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 9n0g

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

J Struct Biol X (2026) 14 pp. 100158-100158 [ DOI: doi:10.1016/j.yjsbx.2026.100158 Pubmed: 42667085 ]

Sort by: Download

Showing 1 - 10 of 422. Page 1 of 43

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [110]
Parengyodontium album [54]
Synthetic construct [49]
Mus musculus [25]
Severe acute respiratory syndrome coronavirus [17]
Saccharomyces cerevisiae [17]
Human immunodeficiency virus 1 [15]
Saccharomyces cerevisiae [13]
Escherichia coli [11]
Lactococcus lactis [10]
Rattus norvegicus [9]
Xenopus laevis [9]
Gallus gallus [9]
Chaetomium thermophilum [7]
Oryctolagus cuniculus [7]
Chaetomium thermophilum [6]
Escherichia coli [6]
Salmonella enterica [5]
Sus scrofa [5]
Glycine max [4]
Salmonella enterica [4]
Caenorhabditis elegans [4]
Bos taurus [4]
(no species) [3]
Desulfofustis sp. pb-srb1 [3]
Methanosarcina mazei [3]
Vibrio parahaemolyticus [3]
Deinococcus radiodurans [3]
Avian orthoavulavirus 1 [3]
Metagenome [3]
Vicugna pacos [3]
Methanococcus maripaludis [3]
Escherichia coli [3]
Toxoplasma gondii [3]
Rhodomonas salina [3]
Aeropyrum pernix [3]
Lama glama [3]
Endosymbiont of tevnia jerichonana [2]
Eastern equine encephalitis virus [2]
Streptococcus thermophilus [2]
Bacillus cereus [2]
Methanosarcina mazei [2]
Henipavirus hendraense [2]
Nipah virus [2]
Amycolatopsis orientalis [2]
Pichia kudriavzevii [2]
Tetrahymena thermophila [2]
Aequorea victoria [2]
Drosophila melanogaster [2]
Escherichia coli [2]
Bacillus cereus [1]
Bacillus phage phi3t [1]
Phytophthora sojae [1]
(no species) [1]
Synechococcus elongatus [1]
Synechocystis sp. pcc 6803 [1]
Rift valley fever phlebovirus [1]
Pseudomonas plecoglossicida [1]
Vibrio cholerae [1]
Staphylococcus aureus [1]
Respiratory syncytial virus [1]
Candidatus methanomethylophilus alvus [1]
Streptococcus pyogenes [1]
Bacillus thermoproteolyticus [1]
Salmonella enterica [1]
Streptomyces azureus [1]
Hathewaya histolytica [1]
Streptomyces rubiginosus [1]
Human respiratory syncytial virus [1]
Staphylococcaceae bacterium [1]
Streptococcus phage vb_sths-va214 [1]
Aquifex aeolicus [1]
Sulfolobus acidocaldarius [1]
Desulfacinum sp. [1]
Sulfolobus turreted icosahedral virus 1 [1]
Mycoplasma pneumoniae [1]
Pseudomonas aeruginosa [1]
Severe acute respiratory syndrome coronavirus [1]
Angavokely henipavirus [1]
Euglena gracilis [1]
Chlamydomonas reinhardtii [1]
Pseudomonas syringae [1]
Plasmodium falciparum [1]
Arabidopsis thaliana [1]
Toxoplasma gondii [1]
Myodes glareolus [1]
Thaumatococcus daniellii [1]
(no species) [1]
Hypocrea jecorina [1]
Thermococcus onnurineus [1]
Trypanosoma brucei [1]
Vairimorpha necatrix [1]
Shigella flexneri [1]
Cydia pomonella granulosis virus [1]
Vibrio parahaemolyticus [1]
Pseudomonas plecoglossicida [1]
(no species) [1]
Spodoptera frugiperda [1]
Leptotrichia wadei [1]
In vitro transcription vector pt7-tp(deltai) [1]

EM Method

Resolution

Release Date

Author by name

Gonen T [133]
Hattne J [106]
Martynowycz MW [93]
Rodriguez JA [52]
Shi D [47]
Clabbers MTB [33]
Briggs JAG [29]
Sawaya MR [29]
Cascio D [28]
Kovtun O [28]
Zee CT [27]
Li X [26]
Gallagher-jones M [25]
Glynn C [25]
Owen DJ [25]
Eisenberg DS [20]
Reyes FE [18]
Unge J [17]
Leneva N [16]
Nannenga BL [14]
Li M [13]
Zhang J [13]
Zhao W [13]
Chen Z [12]
Guo C [12]
He Y [12]
Jensen GJ [12]
Li H [12]
Rodriguez J [12]
Zhang X [12]
Zhou H [12]
Asturias F [11]
Eisenberg D [11]
Fulton TJ [11]
Gao X [11]
Hutchings J [11]
Iqbal N [11]
Jones CG [11]
Kvaratskhelia M [11]
Nelson HM [11]
Qian Y [11]
Stoltz BM [11]
Tang L [11]
Wang C [11]
Wang N [11]
Xia R [11]
Xu Z [11]
Zhang A [11]
Boyer DR [10]
Chao WCH [10]
Choi PH [10]
Dong S [10]
Fulton T [10]
Gil D [10]
Gil-carton D [10]
He J [10]
Lazaro M [10]
Liang J [10]
Lopez-alonso JP [10]
Morado DR [10]
Rasheed N [10]
Seidler P [10]
Tong L [10]
Valle M [10]
Wang M [10]
Zanetti G [10]
Zhou N [10]
Ariotti N [9]
Brasch J [9]
Bykov YS [9]
Carragher B [9]
Collins BM [9]
Dickson VK [9]
Engel BD [9]
Honig B [9]
Howard RJ [9]
Kelly BT [9]
Liu Z [9]
Noble AJ [9]
Potter CS [9]
Schaffer M [9]
Shapiro L [9]
Teasdale RD [9]
Yin H [9]
Zhu X [9]
De La Cruz Mj [9]
Calero G [8]
Hinck AP [8]
Hinck CS [8]
Jia LN [8]
Kim SK [8]
Liu C [8]
Nicolas WJ [8]
Shiriaeva A [8]
Weiss SC [8]
Xiong C [8]
Xiong WX [8]
Zhang Y [8]
Zhou D [8]
Guan J [7]

Journal

NAT COMMUN [71]
TO BE PUBLISHED [42]
STRUCTURE [39]
PNAS [36]
NATURE [21]
BIORXIV [17]
SCI ADV [16]
ELIFE [15]
NAT STRUCT MOL BIOL [14]
NAT METHODS [13]
CELL RES [12]
ACS CENT SCI [11]
CELL REP [9]
NUCLEIC ACIDS RES [8]
J STRUCT BIOL X [7]
NAT CHEM BIOL [7]
J AM CHEM SOC [6]
PLOS PATHOG [6]
SIGNAL TRANSDUCT TARGET THER [6]
IUCRJ [5]
J STRUCT BIOL [5]
ANAL CHEM [4]
CELL [4]
J BIOL CHEM [4]
JCI INSIGHT [4]
MOL CELL [4]
ACTA CRYSTALLOGR D STRUCT BIOL [3]
COMMUN BIOL [3]
EMBO J [3]
MBIO [3]
SCI REP [3]
SCIENCE [3]
ADV SCI [2]
ANGEW CHEM INT ED ENGL [2]
BR.J.PHARMACOL. [2]
INT J MOL SCI [2]
J NANOBIOTECHNOLOGY [2]
MOL BRAIN [2]
NAT CHEM [2]
STRUCT DYN. [2]
BIOMOLECULES [1]
CCS CHEM [1]
CELL.MOL.LIFE SCI. [1]
FEBS LETT [1]
FRONT CELL DEV BIOL [1]
INT J BIOL MACROMOL [1]
J APPL CRYSTALLOGR [1]
J MOL BIOL [1]
J VIROL [1]
MED COMM (BEIJING) [1]
MEDCOMM (2020) [1]
MOL CELLS [1]
NANOTECHNOL RUSSIA [1]
NAT MICROBIOL [1]
PLOS BIOL [1]
SCI BULL (BEIJING) [1]

Software

Microscope

Electron Source

Film or detector model

External links