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subtomogram_extraction_software_ft:Warp

Filter By

Current Database

  • EMDB [254]

Current status

  • REL [254]

Sample type

  • Cell [132]
  • Complex [87]
  • Protein [74]
  • RNA [42]
  • Virus [28]
  • Ligand [9]
  • Cellular component [8]
  • DNA [1]
  • Other [1]
  • Tissue [1]

Organism

  • Mycoplasma pneumoniae [61]
  • Escherichia coli [42]
  • Homo sapiens [24]
  • Schizosaccharomyces pombe [20]
  • Mus musculus [14]
  • Rattus norvegicus [14]
  • Primate t-lymphotropic virus 1 [12]
  • Deltainfluenzavirus influenzae [8]
  • Influenza a virus [6]
  • Influenza a virus [6]
  • Equine infectious anemia virus [4]
  • Emiliania huxleyi virus 201 [4]
  • Pseudomonas phage 201phi2-1 [4]
  • Saccharomyces cerevisiae [4]
  • Mumps orthorubulavirus [3]
  • Dictyostelium discoideum [3]
  • Escherichia coli [3]
  • Saccharomyces cerevisiae [2]
  • Spraguea lophii [2]
  • Agricanvirus ray [2]
  • Adeno-associated dependoparvovirus a [2]
  • (no species) [2]
  • Rotavirus a [2]
  • Erwinia amylovora [2]
  • Escherichia coli [2]
  • Tetrahymena thermophila [2]
  • Synechococcus elongatus [1]
  • Pseudomonas phage phikz [1]
  • Chlamydomonas reinhardtii [1]
  • Synthetic construct [1]
  • Pseudomonas chlororaphis [1]
  • Ruminococcus bromii [1]
  • Gallus gallus [1]
  • Bos taurus [1]

EM Method

  • Subtomogram averaging [254]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [12]
  • ≥ 4Å and < 5Å [17]
  • ≥ 5Å and < 6Å [18]
  • ≥ 6Å and < 8Å [55]
  • ≥ 8Å and < 12Å [62]
  • ≥ 12Å and < 16Å [19]
  • ≥ 16Å and < 20Å [20]
  • ≥ 20Å and < 30Å [30]
  • ≥ 30Å [15]

Release Date

  • 2026 [26]
  • 2025 [80]
  • 2024 [36]
  • 2023 [32]
  • 2022 [67]
  • 2020 [13]

Author by name

  • Mahamid J [88]
  • Xue L [62]
  • Cramer P [46]
  • Tegunov D [46]
  • Lenz S [45]
  • Rappsilber J [45]
  • Grange M [35]
  • Berger C [34]
  • Bork P [34]
  • Dumoux M [34]
  • Naismith JH [34]
  • Watson H [34]
  • Zimmermann-kogadeeva M [34]
  • Beck M [28]
  • Zimmerli CE [24]
  • Goetz SK [20]
  • Khusainov I [20]
  • Schur FKM [20]
  • Cheng DWC [19]
  • Diz-munoz A [19]
  • Kreshuk A [19]
  • Mattausch A [19]
  • Pape C [19]
  • Stojanovska F [19]
  • Tollervey F [19]
  • Toro-nahuelpan M [19]
  • Zaugg JB [19]
  • De Teresa-Trueba I [19]
  • Obr M [18]
  • Laughlin TG [17]
  • Pogliano J [17]
  • Villa E [17]
  • Dick RA [16]
  • Schacherl M [16]
  • Schwarz A [16]
  • Spahn CMT [16]
  • Bartnik I [15]
  • Dietrich L [15]
  • Fusco CM [15]
  • Giandomenico SL [15]
  • Hagen WJH [15]
  • Mueller M [15]
  • Schuman EM [15]
  • Tushev G [15]
  • Will H [15]
  • Burslem GM [14]
  • Chang Y-W [14]
  • Chang YW [14]
  • Ferretti MB [14]
  • Gong Y [14]
  • Kortagere S [14]
  • Li F [14]
  • Lynch KW [14]
  • Marmorstein R [14]
  • Nepal B [14]
  • Peng R [14]
  • Spahn C [14]
  • Xu X [14]
  • Zhou M [14]
  • Corbett KD [13]
  • Chernikova D [12]
  • Deep A [12]
  • Enustun E [12]
  • Mansky LM [12]
  • Percipalle M [12]
  • Pinke G [12]
  • Porley D [12]
  • Thader A [12]
  • Yang H [12]
  • Blotz C [11]
  • Graziadei A [11]
  • O Reilly Fj [11]
  • Singh N [11]
  • Sinn L [11]
  • Stulke J [11]
  • Armbruster E [10]
  • Birkholz EA [10]
  • Hofer FW [10]
  • Suslov S [10]
  • Amaro RE [9]
  • Gu Y [9]
  • Khanna K [9]
  • Mccammon JA [9]
  • Prichard AM [9]
  • Seitz C [9]
  • Welsch S [9]
  • Lee J [8]
  • Pogliano K [8]
  • Turonova B [8]
  • Filbeck S [7]
  • Gao Q [7]
  • Gruss OJ [7]
  • Kaplan C [7]
  • Neuner A [7]
  • Pfeffer S [7]
  • Sala C [7]
  • Schiebel E [7]
  • Shin H [7]
  • Vermeulen BJA [7]
  • Wurtz M [7]

Journal

  • BIORXIV [52]
  • NAT COMMUN [52]
  • NATURE [46]
  • SCIENCE [41]
  • NAT STRUCT MOL BIOL [28]
  • NAT METHODS [26]
  • SCI ADV [14]
  • TO BE PUBLISHED [13]
  • J STRUCT BIOL [7]
  • PNAS [5]
  • CELL [3]
  • CELL HOST MICROBE [3]
  • COMMUN BIOL [2]
  • J CELL BIOL [2]
  • MOL CELL [2]
  • NAT MICROBIOL [2]
  • ACS CHEM BIOL [1]
  • ELIFE [1]
  • J VIS EXP [1]
  • NAT CELL BIOL [1]
  • PLOS BIOL [1]

Software

  • WARP [254]
  • RELION [229]
  • PYTOM [40]
  • CRYOLO [38]
  • M [20]
  • DYNAMO [17]
  • MATLAB [12]
  • SUBTOM [12]
  • IMOD [5]
  • EMCLARITY [4]
  • CTFFIND [2]
  • UCSF CHIMERAX [2]
  • NOVACTF [1]
  • STOPGAP [1]

Microscope

  • FEI TITAN KRIOS [153]
  • TFS KRIOS [100]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [254]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [87]
  • GATAN K3 BIOQUANTUM 6K X 4K [86]
  • TFS FALCON 4I 4K X 4K [38]
  • GATAN K3 6K X 4K [25]
  • FEI FALCON IV 4K X 4K [15]
  • GATAN K2 QUANTUM 4K X 4K [13]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]
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Showing 1 - 10 of 254. Page 1 of 26
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EMD-63484
Download Map
3D View
Subtomogram average of GEM-mCherry-nanobody particles on A549 cell membranes
Release date: March 4, 2026
Resolution: 18.0 Å
EM Method: Subtomogram averaging

Zou T, Zhang J, Zhang Y, Zhang M, Wang H, Pan Y, Wang H

To Be Published

EMD-75185
Download Map
3D View
Rhesus rotavirus consensus structure at 4.7 Angstrom resolution from cryo-ET
Release date: March 4, 2026
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 10ic

de Sautu M, Leistner C, Kirchhausen T, Jenni S, Harrison SC

bioRxiv (2026) [ Pubmed: 41659395 DOI: doi:10.64898/2026.01.21.700916 ]

EMD-55369
Download Map
3D View
Control media rat neuronal 80S ribosome - consensus
Release date: Feb. 25, 2026
Resolution: 6.3 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55370
Download Map
3D View
Control media rat neuronal 80S ribosome state - decoding
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55371
Download Map
3D View
Control media rat neuronal 80S ribosome state - peptide bond formation
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55372
Download Map
3D View
Control media rat neuronal 80S ribosome state - pre-translocating
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55373
Download Map
3D View
Control media rat neuronal 80S ribosome state - hibernating I
Release date: Feb. 25, 2026
Resolution: 6.3 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55374
Download Map
3D View
Nutrient deprived rat neuronal 80S ribosome - consensus
Release date: Feb. 25, 2026
Resolution: 5.4 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55375
Download Map
3D View
Nutrient deprived rat neuronal 80S ribosome state - decoding
Release date: Feb. 25, 2026
Resolution: 6.1 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

EMD-55376
Download Map
3D View
Nutrient deprived rat neuronal 80S ribosome state - peptide bond formation
Release date: Feb. 25, 2026
Resolution: 5.8 Å
EM Method: Subtomogram averaging

Schwarz A, Mueller M, Will H, Dietrich L, Giandomenico SL, Tushev G, Bartnik I, Khusainov I, Fusco CM, Schuman EM

Science (2026) 391 pp. eadr4287-eadr4287 [ Pubmed: 41712727 DOI: doi:10.1126/science.adr4287 ]

Sort by: Download
Showing 1 - 10 of 254. Page 1 of 26
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [254]

Current status

  • REL [254]

Sample type

  • Cell [132]
  • Complex [87]
  • Protein [74]
  • RNA [42]
  • Virus [28]
  • Ligand [9]
  • Cellular component [8]
  • DNA [1]
  • Other [1]
  • Tissue [1]

Organism

  • Mycoplasma pneumoniae [61]
  • Escherichia coli [42]
  • Homo sapiens [24]
  • Schizosaccharomyces pombe [20]
  • Mus musculus [14]
  • Rattus norvegicus [14]
  • Primate t-lymphotropic virus 1 [12]
  • Deltainfluenzavirus influenzae [8]
  • Influenza a virus [6]
  • Influenza a virus [6]
  • Equine infectious anemia virus [4]
  • Emiliania huxleyi virus 201 [4]
  • Pseudomonas phage 201phi2-1 [4]
  • Saccharomyces cerevisiae [4]
  • Mumps orthorubulavirus [3]
  • Dictyostelium discoideum [3]
  • Escherichia coli [3]
  • Saccharomyces cerevisiae [2]
  • Spraguea lophii [2]
  • Agricanvirus ray [2]
  • Adeno-associated dependoparvovirus a [2]
  • (no species) [2]
  • Rotavirus a [2]
  • Erwinia amylovora [2]
  • Escherichia coli [2]
  • Tetrahymena thermophila [2]
  • Synechococcus elongatus [1]
  • Pseudomonas phage phikz [1]
  • Chlamydomonas reinhardtii [1]
  • Synthetic construct [1]
  • Pseudomonas chlororaphis [1]
  • Ruminococcus bromii [1]
  • Gallus gallus [1]
  • Bos taurus [1]

EM Method

  • Subtomogram averaging [254]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [12]
  • ≥ 4Å and < 5Å [17]
  • ≥ 5Å and < 6Å [18]
  • ≥ 6Å and < 8Å [55]
  • ≥ 8Å and < 12Å [62]
  • ≥ 12Å and < 16Å [19]
  • ≥ 16Å and < 20Å [20]
  • ≥ 20Å and < 30Å [30]
  • ≥ 30Å [15]

Release Date

  • 2026 [26]
  • 2025 [80]
  • 2024 [36]
  • 2023 [32]
  • 2022 [67]
  • 2020 [13]

Author by name

  • Mahamid J [88]
  • Xue L [62]
  • Cramer P [46]
  • Tegunov D [46]
  • Lenz S [45]
  • Rappsilber J [45]
  • Grange M [35]
  • Berger C [34]
  • Bork P [34]
  • Dumoux M [34]
  • Naismith JH [34]
  • Watson H [34]
  • Zimmermann-kogadeeva M [34]
  • Beck M [28]
  • Zimmerli CE [24]
  • Goetz SK [20]
  • Khusainov I [20]
  • Schur FKM [20]
  • Cheng DWC [19]
  • Diz-munoz A [19]
  • Kreshuk A [19]
  • Mattausch A [19]
  • Pape C [19]
  • Stojanovska F [19]
  • Tollervey F [19]
  • Toro-nahuelpan M [19]
  • Zaugg JB [19]
  • De Teresa-Trueba I [19]
  • Obr M [18]
  • Laughlin TG [17]
  • Pogliano J [17]
  • Villa E [17]
  • Dick RA [16]
  • Schacherl M [16]
  • Schwarz A [16]
  • Spahn CMT [16]
  • Bartnik I [15]
  • Dietrich L [15]
  • Fusco CM [15]
  • Giandomenico SL [15]
  • Hagen WJH [15]
  • Mueller M [15]
  • Schuman EM [15]
  • Tushev G [15]
  • Will H [15]
  • Burslem GM [14]
  • Chang Y-W [14]
  • Chang YW [14]
  • Ferretti MB [14]
  • Gong Y [14]
  • Kortagere S [14]
  • Li F [14]
  • Lynch KW [14]
  • Marmorstein R [14]
  • Nepal B [14]
  • Peng R [14]
  • Spahn C [14]
  • Xu X [14]
  • Zhou M [14]
  • Corbett KD [13]
  • Chernikova D [12]
  • Deep A [12]
  • Enustun E [12]
  • Mansky LM [12]
  • Percipalle M [12]
  • Pinke G [12]
  • Porley D [12]
  • Thader A [12]
  • Yang H [12]
  • Blotz C [11]
  • Graziadei A [11]
  • O Reilly Fj [11]
  • Singh N [11]
  • Sinn L [11]
  • Stulke J [11]
  • Armbruster E [10]
  • Birkholz EA [10]
  • Hofer FW [10]
  • Suslov S [10]
  • Amaro RE [9]
  • Gu Y [9]
  • Khanna K [9]
  • Mccammon JA [9]
  • Prichard AM [9]
  • Seitz C [9]
  • Welsch S [9]
  • Lee J [8]
  • Pogliano K [8]
  • Turonova B [8]
  • Filbeck S [7]
  • Gao Q [7]
  • Gruss OJ [7]
  • Kaplan C [7]
  • Neuner A [7]
  • Pfeffer S [7]
  • Sala C [7]
  • Schiebel E [7]
  • Shin H [7]
  • Vermeulen BJA [7]
  • Wurtz M [7]

Journal

  • BIORXIV [52]
  • NAT COMMUN [52]
  • NATURE [46]
  • SCIENCE [41]
  • NAT STRUCT MOL BIOL [28]
  • NAT METHODS [26]
  • SCI ADV [14]
  • TO BE PUBLISHED [13]
  • J STRUCT BIOL [7]
  • PNAS [5]
  • CELL [3]
  • CELL HOST MICROBE [3]
  • COMMUN BIOL [2]
  • J CELL BIOL [2]
  • MOL CELL [2]
  • NAT MICROBIOL [2]
  • ACS CHEM BIOL [1]
  • ELIFE [1]
  • J VIS EXP [1]
  • NAT CELL BIOL [1]
  • PLOS BIOL [1]

Software

  • WARP [254]
  • RELION [229]
  • PYTOM [40]
  • CRYOLO [38]
  • M [20]
  • DYNAMO [17]
  • MATLAB [12]
  • SUBTOM [12]
  • IMOD [5]
  • EMCLARITY [4]
  • CTFFIND [2]
  • UCSF CHIMERAX [2]
  • NOVACTF [1]
  • STOPGAP [1]

Microscope

  • FEI TITAN KRIOS [153]
  • TFS KRIOS [100]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [254]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [87]
  • GATAN K3 BIOQUANTUM 6K X 4K [86]
  • TFS FALCON 4I 4K X 4K [38]
  • GATAN K3 6K X 4K [25]
  • FEI FALCON IV 4K X 4K [15]
  • GATAN K2 QUANTUM 4K X 4K [13]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]