Edit your search query here and hit Return to execute it:
subtomogram_extraction_reference_model:a*

Filter By

Current Database

  • EMDB [40]

Current status

  • REL [40]

Sample type

  • Complex [21]
  • Cellular component [15]
  • Protein [12]
  • Cell [7]
  • Virus [3]
  • Ligand [2]
  • Other [1]

Organism

  • Homo sapiens [6]
  • Rattus norvegicus [5]
  • Pseudomonas phage 201phi2-1 [4]
  • Shigella phage sf6 [3]
  • Haloferax volcanii [3]
  • Plasmodium falciparum [3]
  • Yersinia enterocolitica [3]
  • Adeno-associated virus [2]
  • Erwinia amylovora [2]
  • Escherichia coli [2]
  • Caulobacter vibrioides [2]
  • Mus musculus [1]
  • Candidatus methylomirabilis lanthanidiphila [1]
  • (no species) [1]
  • Pseudomonas chlororaphis [1]
  • Shigella flexneri [1]
  • Escherichia coli [1]

EM Method

  • Subtomogram averaging [40]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [10]
  • ≥ 12Å and < 16Å [8]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [7]
  • ≥ 30Å [7]

Release Date

  • 2026 [4]
  • 2025 [4]
  • 2024 [2]
  • 2023 [2]
  • 2022 [11]
  • 2021 [8]
  • 2020 [1]
  • 2019 [2]
  • 2018 [5]
  • 2017 [1]

Author by name

  • Villa E [14]
  • Laughlin TG [10]
  • Pogliano J [10]
  • Amaro RE [8]
  • Armbruster E [8]
  • Birkholz EA [8]
  • Corbett KD [8]
  • Deep A [8]
  • Enustun E [8]
  • Gu Y [8]
  • Khanna K [8]
  • Mccammon JA [8]
  • Prichard AM [8]
  • Seitz C [8]
  • Suslov S [8]
  • Baumeister W [5]
  • Beck F [5]
  • Bharat TAM [5]
  • Edbauer D [5]
  • Fernandez-busnadiego R [5]
  • Frottin F [5]
  • Guo Q [5]
  • Hartl FU [5]
  • Hartmann H [5]
  • Hipp MS [5]
  • Lehmer C [5]
  • Martinez-sanchez A [5]
  • Perez-berlanga M [5]
  • Rudack T [5]
  • Basiashvili T [4]
  • Chen S [4]
  • Hutchings J [4]
  • Leschziner AE [4]
  • Von Kuegelgen A [4]
  • Von Kugelgen A [4]
  • Alegrio Louro J [3]
  • Alva V [3]
  • Berger C [3]
  • Chang Y-W [3]
  • Chang YW [3]
  • Chen WD [3]
  • Cova MM [3]
  • Diepold A [3]
  • Guerin A [3]
  • John ARO [3]
  • Kudryashev M [3]
  • Lebrun M [3]
  • Lopez-iglesias C [3]
  • Mageswaran SK [3]
  • Martinez M [3]
  • Molnar P [3]
  • Peters PJ [3]
  • Ravelli RBG [3]
  • Sanz Murillo M [3]
  • Tang L [3]
  • Villagran Suarez A [3]
  • Asavavimol A [2]
  • Brun YV [2]
  • Cafferata A [2]
  • Cameron M [2]
  • Chapman MS [2]
  • Chiu N [2]
  • Corbett K [2]
  • David L [2]
  • Davulcu O [2]
  • Davydov D [2]
  • Desai I [2]
  • Diaz G [2]
  • Dutton R [2]
  • Gingerich D [2]
  • Gingerich DS [2]
  • Grose JH [2]
  • Guereca M [2]
  • Hardy GG [2]
  • Hearst K [2]
  • Hu G [2]
  • Hu GQ [2]
  • Huang L [2]
  • Jacobs E [2]
  • Johnson A [2]
  • Kahn S [2]
  • Koch R [2]
  • Kureisaite-ciziene D [2]
  • Lee A [2]
  • Lee J [2]
  • Martinez A [2]
  • Meyer J [2]
  • Meyer NL [2]
  • Noble AJ [2]
  • Norquist M [2]
  • Pan Y [2]
  • Pau T [2]
  • Pogliano K [2]
  • Prasad G [2]
  • Prichard A [2]
  • Saam K [2]
  • Sandhu M [2]
  • Sarabia AJ [2]
  • Schumaker S [2]
  • Sonin A [2]

Journal

  • NATURE [8]
  • CELL [6]
  • ELIFE [6]
  • BIORXIV [5]
  • NAT MICROBIOL [4]
  • TO BE PUBLISHED [4]
  • CELL REP [3]
  • J STRUCT BIOL [3]
  • ACS CHEM BIOL [1]
  • FRONT MICROBIOL [1]
  • J CELL BIOL [1]
  • NAT COMMUN [1]

Software

  • RELION [31]
  • DYNAMO [18]
  • WARP [17]
  • IMOD [7]
  • CTFFIND [5]
  • PYTOM [5]
  • TOM TOOLBOX [5]
  • UCSF CHIMERAX [4]
  • EMAN2 [3]
  • TOMOCTF [2]
  • NOVACTF [1]
  • PEET [1]

Microscope

  • FEI TITAN KRIOS [30]
  • TFS KRIOS [4]
  • FEI TALOS ARCTICA [3]
  • FEI TECNAI ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [40]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [23]
  • GATAN K3 6K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • FEI FALCON III 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
Sort by: Download
Showing 1 - 10 of 40. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-63484
Download Map
3D View
Subtomogram average of GEM-mCherry-nanobody particles on A549 cell membranes
Release date: March 4, 2026
Resolution: 18.0 Å
EM Method: Subtomogram averaging

Zou T, Zhang J, Zhang Y, Zhang M, Wang H, Pan Y, Wang H

To Be Published

EMD-63526
Download Map
3D View
Subtomogram average of GEM-mCherry-nanobody labeled EGFR on A549 cell membranes
Release date: Feb. 4, 2026
Resolution: 38.0 Å
EM Method: Subtomogram averaging

Zou T, Zhang J, Zhang Y, Zhang M, Wang H, Pan Y, Wang H

ACS Chem Biol (2026) 21 pp. 302-311 [ DOI: doi:10.1021/acschembio.5c00758 Pubmed: 41564420 ]

EMD-74840
Download Map
3D View
12.7-Angstrom resolution structure of bacteriophage Sf6 in the C1 symmetry by cryo-electron tomography and sub-tomogram averaging with 538 particles reveal the tail appendage
CryoEM
Release date: Jan. 28, 2026
Resolution: 12.7 Å
EM Method: Subtomogram averaging

Tang L

To Be Published

EMD-74861
Download Map
3D View
9.1-Angstrom resolution structure of the portal protein core of bacteriophage Sf6 by cryo-electron tomography and sub-tomogram averaging with 538 particles
CryoEM
Release date: Jan. 28, 2026
Resolution: 9.1 Å
EM Method: Subtomogram averaging

Tang L

To Be Published

EMD-45594
Download Map
3D View
Full-length autoinhibited LRRK2 I2020T co-polymerized with microtubules and MLi-2
CryoEM
Release date: May 14, 2025
Resolution: 8.3 Å
EM Method: Subtomogram averaging

Chen S, Basiashvili T, Hutchings J, Sanz Murillo M, Villagran Suarez A, Alegrio Louro J, Leschziner AE, Villa E

eLife (2024) [ DOI: doi:10.7554/elife.100799.1 ]

EMD-45595
Download Map
3D View
Full-length autoinhibited LRRK2 on microtubules with MLi-2
CryoEM
Release date: May 14, 2025
Resolution: 8.3 Å
EM Method: Subtomogram averaging

Chen S, Basiashvili T, Hutchings J, Sanz Murillo M, Villagran Suarez A, Alegrio Louro J, Leschziner AE, Villa E

eLife (2024) [ DOI: doi:10.7554/elife.100799.1 ]

EMD-45596
Download Map
3D View
Full-length autoinhibited LRRK2 on microtubules with GZD-824
CryoEM
Release date: May 14, 2025
Resolution: 8.1 Å
EM Method: Subtomogram averaging

Chen S, Basiashvili T, Hutchings J, Sanz Murillo M, Villagran Suarez A, Alegrio Louro J, Leschziner AE, Villa E

eLife (2024) [ DOI: doi:10.7554/elife.100799.1 ]

EMD-45591
Download Map
3D View
Autoinhibited full-length LRRK2 I2020T on microtubules with MLi-2
CryoEM
Release date: Dec. 25, 2024
Resolution: 7.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9cho
Q-score: 0.159

Chen S, Basiashvili T, Hutchings J, Murillo MS, Suarez AV, Xiong E, Louro JA, Leschziner AE, Villa E

bioRxiv (2025) [ DOI: doi:10.1101/2024.06.18.599606 Pubmed: 38948781 ]

EMD-18037
Download Map
3D View
Raw data
EMPIAR-11945
In situ 70S ribosome of E. coli K-12 untreated cells
CryoEM
Release date: June 19, 2024
Resolution: 8.5 Å
EM Method: Subtomogram averaging

Khusainov I, Romanov N, Goemans C, Turonova B, Zimmerli CE, Welsch S, Langer JD, Typas A, Beck M

Nat Commun (2024) 15 pp. 4783-4783 [ DOI: doi:10.1038/s41467-024-49084-5 Pubmed: 38839776 ]

Sort by: Download
Showing 1 - 10 of 40. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [40]

Current status

  • REL [40]

Sample type

  • Complex [21]
  • Cellular component [15]
  • Protein [12]
  • Cell [7]
  • Virus [3]
  • Ligand [2]
  • Other [1]

Organism

  • Homo sapiens [6]
  • Rattus norvegicus [5]
  • Pseudomonas phage 201phi2-1 [4]
  • Shigella phage sf6 [3]
  • Haloferax volcanii [3]
  • Plasmodium falciparum [3]
  • Yersinia enterocolitica [3]
  • Adeno-associated virus [2]
  • Erwinia amylovora [2]
  • Escherichia coli [2]
  • Caulobacter vibrioides [2]
  • Mus musculus [1]
  • Candidatus methylomirabilis lanthanidiphila [1]
  • (no species) [1]
  • Pseudomonas chlororaphis [1]
  • Shigella flexneri [1]
  • Escherichia coli [1]

EM Method

  • Subtomogram averaging [40]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [10]
  • ≥ 12Å and < 16Å [8]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [7]
  • ≥ 30Å [7]

Release Date

  • 2026 [4]
  • 2025 [4]
  • 2024 [2]
  • 2023 [2]
  • 2022 [11]
  • 2021 [8]
  • 2020 [1]
  • 2019 [2]
  • 2018 [5]
  • 2017 [1]

Author by name

  • Villa E [14]
  • Laughlin TG [10]
  • Pogliano J [10]
  • Amaro RE [8]
  • Armbruster E [8]
  • Birkholz EA [8]
  • Corbett KD [8]
  • Deep A [8]
  • Enustun E [8]
  • Gu Y [8]
  • Khanna K [8]
  • Mccammon JA [8]
  • Prichard AM [8]
  • Seitz C [8]
  • Suslov S [8]
  • Baumeister W [5]
  • Beck F [5]
  • Bharat TAM [5]
  • Edbauer D [5]
  • Fernandez-busnadiego R [5]
  • Frottin F [5]
  • Guo Q [5]
  • Hartl FU [5]
  • Hartmann H [5]
  • Hipp MS [5]
  • Lehmer C [5]
  • Martinez-sanchez A [5]
  • Perez-berlanga M [5]
  • Rudack T [5]
  • Basiashvili T [4]
  • Chen S [4]
  • Hutchings J [4]
  • Leschziner AE [4]
  • Von Kuegelgen A [4]
  • Von Kugelgen A [4]
  • Alegrio Louro J [3]
  • Alva V [3]
  • Berger C [3]
  • Chang Y-W [3]
  • Chang YW [3]
  • Chen WD [3]
  • Cova MM [3]
  • Diepold A [3]
  • Guerin A [3]
  • John ARO [3]
  • Kudryashev M [3]
  • Lebrun M [3]
  • Lopez-iglesias C [3]
  • Mageswaran SK [3]
  • Martinez M [3]
  • Molnar P [3]
  • Peters PJ [3]
  • Ravelli RBG [3]
  • Sanz Murillo M [3]
  • Tang L [3]
  • Villagran Suarez A [3]
  • Asavavimol A [2]
  • Brun YV [2]
  • Cafferata A [2]
  • Cameron M [2]
  • Chapman MS [2]
  • Chiu N [2]
  • Corbett K [2]
  • David L [2]
  • Davulcu O [2]
  • Davydov D [2]
  • Desai I [2]
  • Diaz G [2]
  • Dutton R [2]
  • Gingerich D [2]
  • Gingerich DS [2]
  • Grose JH [2]
  • Guereca M [2]
  • Hardy GG [2]
  • Hearst K [2]
  • Hu G [2]
  • Hu GQ [2]
  • Huang L [2]
  • Jacobs E [2]
  • Johnson A [2]
  • Kahn S [2]
  • Koch R [2]
  • Kureisaite-ciziene D [2]
  • Lee A [2]
  • Lee J [2]
  • Martinez A [2]
  • Meyer J [2]
  • Meyer NL [2]
  • Noble AJ [2]
  • Norquist M [2]
  • Pan Y [2]
  • Pau T [2]
  • Pogliano K [2]
  • Prasad G [2]
  • Prichard A [2]
  • Saam K [2]
  • Sandhu M [2]
  • Sarabia AJ [2]
  • Schumaker S [2]
  • Sonin A [2]

Journal

  • NATURE [8]
  • CELL [6]
  • ELIFE [6]
  • BIORXIV [5]
  • NAT MICROBIOL [4]
  • TO BE PUBLISHED [4]
  • CELL REP [3]
  • J STRUCT BIOL [3]
  • ACS CHEM BIOL [1]
  • FRONT MICROBIOL [1]
  • J CELL BIOL [1]
  • NAT COMMUN [1]

Software

  • RELION [31]
  • DYNAMO [18]
  • WARP [17]
  • IMOD [7]
  • CTFFIND [5]
  • PYTOM [5]
  • TOM TOOLBOX [5]
  • UCSF CHIMERAX [4]
  • EMAN2 [3]
  • TOMOCTF [2]
  • NOVACTF [1]
  • PEET [1]

Microscope

  • FEI TITAN KRIOS [30]
  • TFS KRIOS [4]
  • FEI TALOS ARCTICA [3]
  • FEI TECNAI ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [40]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [23]
  • GATAN K3 6K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • FEI FALCON III 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [2]