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subtomogram_extraction_reference_model:Ab-initio

Filter By

Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Protein [5]
  • Complex [4]
  • Ligand [1]
  • Virus [1]

Organism

  • Homo sapiens [4]
  • Nipah virus [1]

EM Method

  • Subtomogram averaging [5]

Resolution

  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [3]

Model molecular weight

  • 100-250 kDa [1]

Release Date

  • 2026 [1]
  • 2025 [3]
  • 2024 [1]

Author by name

  • Basiashvili T [4]
  • Chen S [4]
  • Hutchings J [4]
  • Leschziner AE [4]
  • Villa E [4]
  • Alegrio Louro J [3]
  • Sanz Murillo M [3]
  • Villagran Suarez A [3]
  • Aguilar HC [1]
  • Autin L [1]
  • Dick RA [1]
  • Ercanli N [1]
  • Hinsley AC [1]
  • Lee JF [1]
  • Louro JA [1]
  • Murillo MS [1]
  • Obr M [1]
  • Ricana C [1]
  • Schur FKM [1]
  • Suarez AV [1]
  • Upadhye VV [1]
  • Xiong E [1]

Journal

  • ELIFE [4]
  • BIORXIV [2]

Software

  • DYNAMO [5]
  • RELION [5]
  • UCSF CHIMERAX [4]
  • WARP [4]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • InterPro [1]
  • Pfam [1]
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EMD-49696
Download Map
3D View
Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles
CryoEM
Release date: Aug. 19, 2026
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9nqy
Q-score: 0.191
Similar entry percentile: 70%

Upadhye VV, Lee JF, Ercanli N, Ricana C, Hinsley AC, Obr M, Autin L, Schur FKM, Aguilar HC, Dick RA

bioRxiv (2026) [ Pubmed: 42523209 DOI: doi:10.64898/2026.07.16.738223 ]

EMD-45594
Download Map
3D View
Full-length autoinhibited LRRK2 I2020T co-polymerized with microtubules and MLi-2
CryoEM
Release date: May 14, 2025
Resolution: 8.3 Å
EM Method: Subtomogram averaging

Chen S, Basiashvili T, Hutchings J, Sanz Murillo M, Villagran Suarez A, Alegrio Louro J, Leschziner AE, Villa E

eLife (2024) [ DOI: doi:10.7554/elife.100799.1 ]

EMD-45595
Download Map
3D View
Full-length autoinhibited LRRK2 on microtubules with MLi-2
CryoEM
Release date: May 14, 2025
Resolution: 8.3 Å
EM Method: Subtomogram averaging

Chen S, Basiashvili T, Hutchings J, Sanz Murillo M, Villagran Suarez A, Alegrio Louro J, Leschziner AE, Villa E

eLife (2024) [ DOI: doi:10.7554/elife.100799.1 ]

EMD-45596
Download Map
3D View
Full-length autoinhibited LRRK2 on microtubules with GZD-824
CryoEM
Release date: May 14, 2025
Resolution: 8.1 Å
EM Method: Subtomogram averaging

Chen S, Basiashvili T, Hutchings J, Sanz Murillo M, Villagran Suarez A, Alegrio Louro J, Leschziner AE, Villa E

eLife (2024) [ DOI: doi:10.7554/elife.100799.1 ]

EMD-45591
Download Map
3D View
Autoinhibited full-length LRRK2 I2020T on microtubules with MLi-2
CryoEM
Release date: Dec. 25, 2024
Resolution: 7.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9cho
Q-score: 0.159
Similar entry percentile: 70%

Chen S, Basiashvili T, Hutchings J, Murillo MS, Suarez AV, Xiong E, Louro JA, Leschziner AE, Villa E

bioRxiv (2025) [ DOI: doi:10.1101/2024.06.18.599606 Pubmed: 38948781 ]

Sort by: Download
Showing 1 - 5 of 5. Page 1 of 1
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Protein [5]
  • Complex [4]
  • Ligand [1]
  • Virus [1]

Organism

  • Homo sapiens [4]
  • Nipah virus [1]

EM Method

  • Subtomogram averaging [5]

Resolution

  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [3]

Model molecular weight

  • 100-250 kDa [1]

Release Date

  • 2026 [1]
  • 2025 [3]
  • 2024 [1]

Author by name

  • Basiashvili T [4]
  • Chen S [4]
  • Hutchings J [4]
  • Leschziner AE [4]
  • Villa E [4]
  • Alegrio Louro J [3]
  • Sanz Murillo M [3]
  • Villagran Suarez A [3]
  • Aguilar HC [1]
  • Autin L [1]
  • Dick RA [1]
  • Ercanli N [1]
  • Hinsley AC [1]
  • Lee JF [1]
  • Louro JA [1]
  • Murillo MS [1]
  • Obr M [1]
  • Ricana C [1]
  • Schur FKM [1]
  • Suarez AV [1]
  • Upadhye VV [1]
  • Xiong E [1]

Journal

  • ELIFE [4]
  • BIORXIV [2]

Software

  • DYNAMO [5]
  • RELION [5]
  • UCSF CHIMERAX [4]
  • WARP [4]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • InterPro [1]
  • Pfam [1]