Edit your search query here and hit Return to execute it:
subtomogram_extraction_reference_model:"reference-free"

Filter By

Current Database

  • EMDB [27]

Current status

  • REL [27]

Sample type

  • Complex [26]
  • Protein [16]
  • Ligand [6]
  • Cell [1]

Organism

  • Homo sapiens [17]
  • Mus musculus [8]
  • Human immunodeficiency virus 1 [6]
  • Chaetomium thermophilum [5]
  • Sus scrofa [4]
  • Rattus norvegicus [3]
  • Chaetomium thermophilum [2]
  • Chlamydomonas reinhardtii [1]

EM Method

  • Subtomogram averaging [27]

Resolution

  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [20]
  • ≥ 20Å and < 30Å [4]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [5]
  • 1-2 MDa [1]

Release Date

  • 2023 [6]
  • 2022 [6]
  • 2020 [7]
  • 2018 [8]

Author by name

  • Briggs JAG [15]
  • Kovtun O [15]
  • Owen DJ [15]
  • Hooy RM [12]
  • Hurley JH [12]
  • Iwamoto Y [12]
  • Ren X [12]
  • Tudorica DA [12]
  • Ariotti N [8]
  • Bykov YS [8]
  • Collins BM [8]
  • Engel BD [8]
  • Leneva N [8]
  • Schaffer M [8]
  • Teasdale RD [8]
  • Dickson VK [7]
  • Kane Dickson V [7]
  • Kelly BT [7]
  • Owen D [4]
  • Engel ED [1]
  • Rohan TS [1]

Author by ORCID

  • Kovtun O [15]
  • Owen DJ [15]
  • Briggs JAG [15]
  • Hurley JH [12]
  • Hooy RM [12]
  • Ren X [12]
  • Iwamoto Y [12]
  • Tudorica DA [12]
  • Teasdale RD [8]
  • Leneva N [8]
  • Engel BD [8]
  • Collins BM [8]
  • Bykov YS [8]
  • Ariotti N [8]
  • Dickson VK [7]
  • Kelly BT [7]

Journal

  • SCI ADV [19]
  • NATURE [8]

Software

  • DYNAMO [16]
  • AV3 [15]
  • TOM [15]
  • RELION [12]
  • CTFFIND [7]
  • IMOD [6]
  • NOVACTF [5]
  • PEET [4]

Microscope

  • FEI TITAN KRIOS [27]

Electron Source

  • FIELD EMISSION GUN [27]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [15]
  • GATAN K3 BIOQUANTUM 6K X 4K [12]

External links

  • PDB [27]
  • AlphaFold DB [10]
  • Gene Ontology [10]
  • InterPro [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • SCOP2 [1]
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Showing 1 - 10 of 27. Page 1 of 3
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EMD-27181
Download Map
3D View
beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes
CryoEM
Release date: June 14, 2023
Resolution: 9.3 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8d4c
Q-score: 0.241

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27182
Download Map
3D View
gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated narrow membrane tubes
CryoEM
Release date: June 14, 2023
Resolution: 9.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8d4d
Q-score: 0.211

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27183
Download Map
3D View
Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated wide r membrane tubes
CryoEM
Release date: June 14, 2023
Resolution: 9.2 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8d4e
Q-score: 0.209

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27184
Download Map
3D View
beta-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide r membrane tubes
CryoEM
Release date: June 14, 2023
Resolution: 9.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8d4f
Q-score: 0.23

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27185
Download Map
3D View
gamma-Arf1 mediated dimeric assembly of AP-1, Arf1, Nef complex within lattice on MHC-I lipopeptide incorporated wide r membrane tubes
CryoEM
Release date: June 14, 2023
Resolution: 11.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8d4g
Q-score: 0.135

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-26853
Download Map
3D View
Asymmetric unit of AP-1, Arf1, Nef lattice on MHC-I lipopeptide incorporated narrow membrane tubes
CryoEM
Release date: May 10, 2023
Resolution: 9.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ux3
Q-score: 0.229

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27186
Download Map
3D View
Beta-Arf1 homodimeric interface within AP-1 lattice on narrow membrane tubes
CryoEM
Release date: Nov. 9, 2022
Resolution: 9.3 Å
EM Method: Subtomogram averaging

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27187
Download Map
3D View
Gamma-Arf1 homodimeric interface within AP-1 lattice on narrow membrane tubes
CryoEM
Release date: Nov. 9, 2022
Resolution: 9.4 Å
EM Method: Subtomogram averaging

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27188
Download Map
3D View
Subtomogram average of AP-1, Arf1 and Nef complexes on narrow membrane tubes centered on beta-Arf1 dimers
CryoEM
Release date: Nov. 9, 2022
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

EMD-27189
Download Map
3D View
Subtomogram average of AP-1, Arf1 and Nef complexes on narrow membrane tubes centered on gamma-Arf1 dimers
CryoEM
Release date: Nov. 9, 2022
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Hooy RM, Iwamoto Y, Tudorica DA, Ren X, Hurley JH

Sci Adv (2022) 8 pp. eadd3914-eadd3914 [ Pubmed: 36269825 DOI: doi:10.1126/sciadv.add3914 ]

Sort by: Download
Showing 1 - 10 of 27. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [27]

Current status

  • REL [27]

Sample type

  • Complex [26]
  • Protein [16]
  • Ligand [6]
  • Cell [1]

Organism

  • Homo sapiens [17]
  • Mus musculus [8]
  • Human immunodeficiency virus 1 [6]
  • Chaetomium thermophilum [5]
  • Sus scrofa [4]
  • Rattus norvegicus [3]
  • Chaetomium thermophilum [2]
  • Chlamydomonas reinhardtii [1]

EM Method

  • Subtomogram averaging [27]

Resolution

  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [20]
  • ≥ 20Å and < 30Å [4]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [5]
  • 1-2 MDa [1]

Release Date

  • 2023 [6]
  • 2022 [6]
  • 2020 [7]
  • 2018 [8]

Author by name

  • Briggs JAG [15]
  • Kovtun O [15]
  • Owen DJ [15]
  • Hooy RM [12]
  • Hurley JH [12]
  • Iwamoto Y [12]
  • Ren X [12]
  • Tudorica DA [12]
  • Ariotti N [8]
  • Bykov YS [8]
  • Collins BM [8]
  • Engel BD [8]
  • Leneva N [8]
  • Schaffer M [8]
  • Teasdale RD [8]
  • Dickson VK [7]
  • Kane Dickson V [7]
  • Kelly BT [7]
  • Owen D [4]
  • Engel ED [1]
  • Rohan TS [1]

Author by ORCID

  • Kovtun O [15]
  • Owen DJ [15]
  • Briggs JAG [15]
  • Hurley JH [12]
  • Hooy RM [12]
  • Ren X [12]
  • Iwamoto Y [12]
  • Tudorica DA [12]
  • Teasdale RD [8]
  • Leneva N [8]
  • Engel BD [8]
  • Collins BM [8]
  • Bykov YS [8]
  • Ariotti N [8]
  • Dickson VK [7]
  • Kelly BT [7]

Journal

  • SCI ADV [19]
  • NATURE [8]

Software

  • DYNAMO [16]
  • AV3 [15]
  • TOM [15]
  • RELION [12]
  • CTFFIND [7]
  • IMOD [6]
  • NOVACTF [5]
  • PEET [4]

Microscope

  • FEI TITAN KRIOS [27]

Electron Source

  • FIELD EMISSION GUN [27]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [15]
  • GATAN K3 BIOQUANTUM 6K X 4K [12]

External links

  • PDB [27]
  • AlphaFold DB [10]
  • Gene Ontology [10]
  • InterPro [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • SCOP2 [1]