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subtomogramAveraging

Filter By

Current Database

  • EMDB [3276]

Current status

  • REL [3276]

Sample type

  • Complex [1169]
  • Cellular component [797]
  • Cell [667]
  • Protein [660]
  • Virus [518]
  • Sample [451]
  • Ligand [68]
  • RNA [50]
  • Tissue [26]
  • Other [25]
  • DNA [2]

Organism

  • Homo sapiens [519]
  • Mus musculus [351]
  • Chlamydomonas reinhardtii [260]
  • Human immunodeficiency virus 1 [134]
  • Escherichia coli [115]
  • Rattus norvegicus [109]
  • Saccharomyces cerevisiae [97]
  • Tetrahymena thermophila [71]
  • Severe acute respiratory syndrome coronavirus [70]
  • Mycoplasma pneumoniae [68]
  • Oryctolagus cuniculus [55]
  • Dictyostelium discoideum [50]
  • Schizosaccharomyces pombe [35]
  • Borrelia burgdorferi [32]
  • Caenorhabditis elegans [30]
  • Sus scrofa [30]
  • Bos taurus [28]
  • Drosophila melanogaster [27]
  • Chikungunya virus [26]
  • Rous sarcoma virus [25]
  • Campylobacter jejuni [25]
  • Plasmodium falciparum [24]
  • Xenopus laevis [23]
  • Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [21]
  • Myxococcus xanthus [21]
  • Vibrio cholerae [21]
  • Human herpesvirus 1 [20]
  • Campylobacter jejuni [20]
  • Escherichia coli [20]
  • Human immunodeficiency virus 1 [20]
  • Sus scrofa [17]
  • Vaccinia virus [15]
  • (no species) [13]
  • Human herpesvirus 3 [13]
  • Measles morbillivirus [13]
  • Primate t-lymphotropic virus 1 [13]
  • Legionella pneumophila [13]
  • Danio rerio [13]
  • Influenza a virus [12]
  • Simian immunodeficiency virus [12]
  • Trypanosoma brucei [12]
  • Synthetic construct [11]
  • Toxoplasma gondii [11]
  • Saccharomyces cerevisiae [11]
  • Mammalian orthoreovirus [10]
  • Rift valley fever phlebovirus [10]
  • Zaire ebolavirus [10]
  • Equine infectious anemia virus [9]
  • Streptococcus pneumoniae [9]
  • Mycobacterium phage bxb1 [9]
  • Toxoplasma gondii [9]
  • Chaetomium thermophilum [9]
  • Salmonella enterica [9]
  • Canis lupus [9]
  • Unidentified influenza virus [8]
  • Deltainfluenzavirus influenzae [8]
  • Influenza a virus [8]
  • Thermus thermophilus [8]
  • Human herpesvirus 8 [8]
  • Aggregatibacter actinomycetemcomitans [8]
  • (no species) [7]
  • Enterobacteria phage t4 [7]
  • Shigella flexneri [7]
  • Synechococcus elongatus [7]
  • Murine leukemia virus [7]
  • Caulobacter vibrioides [7]
  • Chaetomium thermophilum [7]
  • Pseudomonas aeruginosa [7]
  • Rotavirus a [7]
  • Varicellovirus suidalpha1 [7]
  • Cryptosporidium parvum [7]
  • (no species) [7]
  • Strongylocentrotus purpuratus [7]
  • Equus caballus [7]
  • Avian infectious bursal disease virus [6]
  • Human respirovirus 3 [6]
  • Flock house virus [6]
  • Enterococcus faecium [6]
  • Agricanvirus ray [6]
  • Helicobacter pylori [6]
  • Neospora caninum [6]
  • Pseudoalteromonas luteoviolacea [6]
  • Dictyostelium discoideum [6]
  • Tetrahymena thermophila [6]
  • Paramecium tetraurelia [6]
  • Torpedo marmorata [6]
  • Gallus gallus [6]
  • Salmonella phage p22 [5]
  • Human respiratory syncytial virus [5]
  • Synechocystis sp. pcc 6803 [5]
  • Lassa mammarenavirus [5]
  • Enterovirus c [5]
  • Orthoebolavirus zairense [5]
  • Aureispira sp. ccb-qb1 [5]
  • Pseudomonas phage 201phi2-1 [5]
  • 2056194 [5]
  • Eastern chimpanzee simian foamy virus [5]
  • Porcine epidemic diarrhea virus [5]
  • Mycoplasma genitalium [5]
  • Porcine epidemic diarrhea virus [5]

EM Method

  • Subtomogram averaging [3276]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [17]
  • ≥ 3Å and < 4Å [76]
  • ≥ 4Å and < 5Å [111]
  • ≥ 5Å and < 6Å [67]
  • ≥ 6Å and < 8Å [262]
  • ≥ 8Å and < 12Å [509]
  • ≥ 12Å and < 16Å [274]
  • ≥ 16Å and < 20Å [229]
  • ≥ 20Å and < 30Å [621]
  • ≥ 30Å [1008]

Model molecular weight

  • 0-50 kDa [13]
  • 50-100 kDa [16]
  • 100-250 kDa [74]
  • 250-500 kDa [56]
  • 500-1000 kDa [52]
  • 1-2 MDa [36]
  • 2-5 MDa [48]
  • 5-10 MDa [8]
  • > 10 MDa [12]

Release Date

  • 2026 [343]
  • 2025 [452]
  • 2024 [494]
  • 2023 [371]
  • 2022 [351]
  • 2021 [217]
  • 2020 [178]
  • 2019 [144]
  • 2018 [128]
  • 2017 [107]
  • 2016 [123]
  • 2015 [74]
  • 2014 [73]
  • 2013 [82]
  • 2012 [69]
  • 2011 [24]
  • 2010 [18]
  • 2009 [11]
  • 2008 [4]
  • 2007 [5]
  • 2006 [8]

Author by name

  • Beck M [238]
  • Liu J [158]
  • Mahamid J [151]
  • Zhang P [147]
  • Baumeister W [145]
  • Turonova B [141]
  • Plitzko JM [132]
  • Briggs JAG [128]
  • Agard DA [122]
  • Kreysing JP [109]
  • Zhu Y [109]
  • Jensen GJ [105]
  • Li S [105]
  • Chiu W [99]
  • Guo Q [99]
  • Engel BD [97]
  • Hutchings J [92]
  • Villa E [87]
  • Beck F [83]
  • Grange M [83]
  • Kikkawa M [83]
  • Schmid MF [83]
  • Chang YW [81]
  • Forster F [78]
  • Xue L [78]
  • Krausslich HG [77]
  • Hummer G [76]
  • Welsch S [76]
  • Pfeffer S [75]
  • Kotecha A [71]
  • Oda T [71]
  • Schaffer M [71]
  • Bui KH [70]
  • Chen L [70]
  • Obarska-kosinska A [70]
  • Schur FKM [70]
  • Yanagisawa H [70]
  • Taniguchi R [68]
  • Kudryashev M [67]
  • Obr M [67]
  • Khusainov I [65]
  • Pilhofer M [65]
  • Wan W [65]
  • Beeby M [63]
  • Kosinski J [63]
  • Xu J [63]
  • Bartesaghi A [62]
  • Sun F [61]
  • Zhang X [61]
  • Cramer P [58]
  • Pigino G [58]
  • Chen M [57]
  • Nicastro D [57]
  • Tegunov D [57]
  • Cruz-leon S [55]
  • Rappsilber J [55]
  • Chen Z [54]
  • Li Z [53]
  • Ni T [53]
  • Zhou ZH [53]
  • Briggs JA [52]
  • Dumoux M [52]
  • Hoffmann PC [52]
  • Zhao X [52]
  • Zimmerli CE [52]
  • Chen Y [51]
  • Fedry J [51]
  • Grunewald K [51]
  • Martinez-sanchez A [51]
  • Yu Z [51]
  • Dick RA [50]
  • Liu Y [50]
  • Subramaniam S [50]
  • Lenz S [49]
  • Xing H [49]
  • Zhang Z [49]
  • Chang Y-W [48]
  • Hou Z [48]
  • Wang H [48]
  • Berger C [46]
  • Shi Y [46]
  • Fernandez JJ [45]
  • Vale RD [45]
  • Wang Z [45]
  • Zhang J [45]
  • Mosalaganti S [44]
  • Zhu X [44]
  • Bork P [43]
  • Fronik S [43]
  • Naismith JH [43]
  • Shen Y [43]
  • Suslov S [43]
  • Wang X [43]
  • Zhang Y [43]
  • Hendrixson DR [42]
  • Wang J [42]
  • Chakraborty S [41]
  • Howes SC [41]
  • Klena N [41]
  • Toro-nahuelpan M [41]

Author by ORCID

  • Beck M [148]
  • Mahamid J [142]
  • Kreysing JP [109]
  • Briggs JAG [97]
  • Engel BD [90]
  • Turonova B [90]
  • Guo Q [89]
  • Chiu W [87]
  • Agard DA [87]
  • Zhang P [86]
  • Plitzko JM [84]
  • Chang YW [81]
  • Grange M [81]
  • Liu J [78]
  • Xue L [78]
  • Forster F [77]
  • Hummer G [76]
  • Kikkawa M [74]
  • Oda T [71]
  • Schmid MF [66]
  • Khusainov I [65]
  • Obarska-kosinska A [65]
  • Kosinski J [63]
  • Pfeffer S [61]
  • Pilhofer M [60]
  • Yanagisawa H [58]
  • Schur FKM [58]
  • Cramer P [57]
  • Baumeister W [56]
  • Welsch S [56]
  • Rappsilber J [53]
  • Li S [53]
  • Bui KH [53]
  • Hoffmann PC [52]
  • Briggs JA [52]
  • Zimmerli CE [52]
  • Pigino G [51]
  • Grunewald K [49]
  • Xing H [49]
  • Krausslich HG [49]
  • Lenz S [49]
  • Chen M [49]
  • Taniguchi R [47]
  • Berger C [46]
  • Schaffer M [45]
  • Kotecha A [45]
  • Dumoux M [44]
  • Fernandez JJ [44]
  • Subramaniam S [44]
  • Bork P [43]
  • Wan W [43]
  • Fronik S [43]
  • Nicastro D [42]
  • Toro-nahuelpan M [41]
  • Zhu Y [41]
  • Zhou ZH [41]
  • Li S [40]
  • Guichard P [39]
  • Ludtke SJ [39]
  • Kudryashev M [39]
  • Zimmermann-kogadeeva M [38]
  • Beeby M [38]
  • Ni T [38]
  • Sun F [38]
  • Weiss GL [38]
  • Shiozaki M [38]
  • Mattei S [36]
  • Mosalaganti S [36]
  • Hagen WJH [35]
  • Huiskonen JT [35]
  • Lishko PV [35]
  • Watson H [34]
  • Rettberg LA [34]
  • Chakraborty S [34]
  • Wilfling F [34]
  • Des Georges A [34]
  • Shi Y [33]
  • Villa E [33]
  • Echeverria I [33]
  • Hendrixson DR [32]
  • Skinner WM [32]
  • Zhu Y [32]
  • Chen Z [32]
  • Duquette M [32]
  • Silva J [31]
  • Hagen WJ [31]
  • Faller WJ [31]
  • Yin G [31]
  • Ke Z [31]
  • Soni N [31]
  • Ricana CL [31]
  • Mechulam Y [31]
  • Briegel A [31]
  • Tai L [30]
  • Vale RD [30]
  • Morado DR [30]
  • Andino-frydman E [30]
  • Daum B [28]
  • Martinez-sanchez A [28]
  • Raunser S [27]

Journal

  • NAT COMMUN [468]
  • BIORXIV [287]
  • PNAS [261]
  • SCIENCE [243]
  • NATURE [233]
  • TO BE PUBLISHED [210]
  • CELL [166]
  • ELIFE [143]
  • SCI ADV [135]
  • NAT METHODS [124]
  • NAT STRUCT MOL BIOL [115]
  • EMBO J [96]
  • MOL CELL [82]
  • NAT MICROBIOL [81]
  • J CELL BIOL [70]
  • MOL BIOL CELL [60]
  • PLOS PATHOG [55]
  • J STRUCT BIOL [49]
  • J VIROL [48]
  • STRUCTURE [46]
  • MBIO [38]
  • CURR BIOL [32]
  • EMBO REP [28]
  • NUCLEIC ACIDS RES [26]
  • COMMUN BIOL [25]
  • MOL MICROBIOL [22]
  • CELL DISCOV [21]
  • CELL RES [20]
  • LIFE SCI ALLIANCE [19]
  • CELL REP [18]
  • NAT CELL BIOL [17]
  • PLOS BIOL [16]
  • J CELL SCI [15]
  • NAT PLANTS [15]
  • J BACTERIOL [14]
  • CELL HOST MICROBE [13]
  • DEV CELL [13]
  • SCI REP [13]
  • J MOL BIOL [12]
  • FRONT CELL INFECT MICROBIOL [9]
  • OPEN BIOL [9]
  • CYTOSKELETON [8]
  • PLOS ONE [8]
  • IUCRJ [7]
  • FEBS LETT [6]
  • J BIOL CHEM [6]
  • J STRUCT BIOL X [6]
  • PLOS GENET [6]
  • SIGNAL TRANSDUCT TARGET THER [6]
  • FRONT MICROBIOL [5]
  • ISCIENCE [5]
  • PLOS NEGL TROP DIS [5]
  • INT J MOL SCI [4]
  • J VIS EXP [4]
  • NAT PROTOC [4]
  • BIOCHEMISTRY [3]
  • CELL.MOL.LIFE SCI. [3]
  • FASEB J [3]
  • MSPHERE [3]
  • PROTEIN CELL [3]
  • VIRUSES [3]
  • VITA [3]
  • ACS CHEM BIOL [2]
  • AIMS BIOPHYS [2]
  • BIOMACROMOLECULES [2]
  • FEBS J [2]
  • GENES CELLS [2]
  • J FUNGI [2]
  • J GEN VIROL [2]
  • J.BIOCHEM. [2]
  • NAT NEUROSCI [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
  • ADV SCI [1]
  • AIMS BIOPHYSICS [1]
  • BIOCHEM J [1]
  • BIOL IMAGING [1]
  • BIOMOLECULES [1]
  • BIORXIV.ORG [1]
  • CELLS [1]
  • FEBS OPEN BIO [1]
  • FRONT CELL DEV BIOL [1]
  • FRONT MOL BIOSCI [1]
  • INFECT.IMMUN. [1]
  • J MUSCLE RES CELL MOTIL [1]
  • J.MUSCLE RES.CELL.MOTIL. [1]
  • KIDNEY INT [1]
  • NANOTECHNOL RUSSIA [1]
  • PLANT PHYSIOL [1]
  • PNAS NEXUS [1]
  • PROTEIN SCI [1]
  • SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]

Software

  • RELION [1058]
  • IMOD [439]
  • WARP [416]
  • DYNAMO [343]
  • PEET [236]
  • PYTOM [150]
  • CTFFIND [133]
  • EMAN2 [116]
  • MATLAB [106]
  • EMCLARITY [92]
  • AV3 [82]
  • NOVACTF [73]
  • NOVASTA [62]
  • TOM TOOLBOX [62]
  • CHIMERA [58]
  • GCTF [56]
  • M [54]
  • STOPGAP [54]
  • CRYOLO [53]
  • CTFPHASEFLIP [53]
  • TOM [49]
  • IMOD, PEET [34]
  • I3 [26]
  • SUBTOM [24]
  • UCSF CHIMERA [23]
  • IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
  • TOMO3D [19]
  • IMOD, TOMO3D, PEET [18]
  • EMAN [16]
  • ETOMO [16]
  • PROTOMO [16]
  • IMOD, DYNAMO [15]
  • IMOD, TOMO3D [15]
  • XMIPP [14]
  • IMOD, RAPTOR, PROTOMO [13]
  • PEET, RUBY-HELIX [13]
  • SPIDER [12]
  • CISTEM [11]
  • IMOD, PROTOMO [11]
  • UCSF CHIMERAX [11]
  • AMIRA [10]
  • IMOD, BSOFT [10]
  • AMIRAFPM [9]
  • BSOFT [9]
  • TOM, AV3 [9]
  • TOM, TOOLBOX, BSOFT, XMIPP [9]
  • TOMOCTF [9]
  • EMIRA [8]
  • IMOD, PROTOMO, I3, EMAN [7]
  • IMOD, TOM, AV3 [7]
  • ARETOMO [6]
  • AV3, TOM, PYTOM [6]
  • I3, PROTOMO [6]
  • IMOD AND IN-HOUSE PROCEDURES [6]
  • IMOD, PRIISM/IVE [6]
  • PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
  • XMIPP, ML, TOMO [6]
  • IMOD, TOM, PACKAGE, MATLAB [5]
  • IMOD AND BSOFT [4]
  • IMOD, EMAN, EMAN2, TOMOHUNTER [4]
  • IMOD, ETOMO, , PEET , SPIDER [4]
  • IMOD, PEET, BSOFT [4]
  • IMOD/PEET [4]
  • IPET, AND, FETR [4]
  • JSUBTOMO [4]
  • PROJALIGN [4]
  • SUPER-SAMPLING SART [4]
  • 3DMOD [3]
  • CRYOSPARC [3]
  • IMOD, XMIPP, TOMO3D [3]
  • TOM, AV3, PYTOM [3]
  • TOM/AV3, MATLAB [3]
  • TOMOALIGN [3]
  • CHIMERA, SEGGER [2]
  • CRYODRGN [2]
  • EM [2]
  • ETOMO, DYNAMO [2]
  • ETOMO, TOM, PYTOM [2]
  • IMOD, BSOFT, JSUBTOMO [2]
  • IMOD, EMAN2 [2]
  • IMOD, PEET, BSOFT, EMAN2, SPARX [2]
  • IMOD, PEET, SPIDER [2]
  • IMOD, SPIDER, BSOFT [2]
  • IMOD, TOMO3D, RELION [2]
  • IMOD, TOMOHUNTER [2]
  • MOTIONCORR, IMOD, TOMOCTF, PEET [2]
  • MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
  • MRC, IMOD, IVE [2]
  • PROTOMO AND I3 [2]
  • PROTOMO, IMOD [2]
  • APPION [1]
  • BSOFT, JSUBTOMO [1]
  • CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
  • CHIMERA, MDFF [1]
  • CHIMERA, VMD, MDFF [1]
  • CHIMERA, X-PLOR [1]
  • COMET [1]
  • COOT [1]
  • EM-PACKAGE, TOM FOR MATLAB [1]
  • EMAN, HIMPOSE, SPIDER [1]

Microscope

  • FEI TITAN KRIOS [1634]
  • TFS KRIOS [798]
  • FEI POLARA 300 [294]
  • FEI TALOS ARCTICA [99]
  • FEI TECNAI F20 [71]
  • FEI TECNAI F30 [50]
  • FEI TECNAI 20 [46]
  • JEOL 2200FS [45]
  • JEOL 3100FFC [44]
  • FEI TITAN [39]
  • TFS GLACIOS [31]
  • OTHER [20]
  • FEI TECNAI 12 [17]
  • JEOL 3200FSC [16]
  • JEOL 2100 [13]
  • FEI TECNAI ARCTICA [10]
  • FEI/PHILIPS CM300FEG/T [10]
  • JEOL 3100FEF [7]
  • TFS TALOS [7]
  • JEOL 2010F [5]
  • JEOL 2200FSC [5]
  • FEI/PHILIPS CM300FEG/ST [4]
  • FEI/PHILIPS CM200FEG [3]
  • JEOL 2100F [3]
  • JEOL CRYO ARM 300 [3]
  • TFS TITAN THEMIS [3]

Electron Source

  • FIELD EMISSION GUN [3215]
  • LAB6 [49]
  • OTHER [10]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [921]
  • GATAN K3 BIOQUANTUM 6K X 4K [500]
  • GATAN K3 6K X 4K [470]
  • FEI FALCON IV 4K X 4K [311]
  • GATAN K2 QUANTUM 4K X 4K [291]
  • TFS FALCON 4I 4K X 4K [178]
  • GATAN ULTRASCAN 4000 4K X 4K [86]
  • TVIPS TEMCAM-F416 4K X 4K [70]
  • GATAN ULTRASCAN 1000 2K X 2K [65]
  • FEI FALCON II 4K X 4K [62]
  • GENERIC CCD [47]
  • GATAN MULTISCAN [33]
  • TVIPS TEMCAM-F415 4K X 4K [31]
  • FEI FALCON III 4K X 4K [27]
  • GATAN K2 4K X 4K [26]
  • GATAN K3 BIOCONTINUUM 6K X 4K [22]
  • GENERIC GATAN [18]
  • DIRECT ELECTRON DE-20 5K X 3K [15]
  • FEI FALCON I 4K X 4K [13]
  • TVIPS TEMCAM-F216 2K X 2K [10]
  • OTHER [7]
  • FEI EAGLE 4K X 4K [6]
  • GATAN K2 BASE 4K X 4K [6]
  • GENERIC GATAN 2K X 2K [6]
  • GENERIC TVIPS 4K X 4K [6]
  • DIRECT ELECTRON DE-12 4K X 3K [5]
  • TVIPS TEMCAM-F224 2K X 2K [5]
  • DIRECT ELECTRON DE-16 4K X 4K [3]
  • FEI EAGLE 2K X 2K [2]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GENERIC GATAN 4K X 4K [1]

External links

  • PDB [3173]
  • UniProt [393]
  • EMPIAR [381]
  • PDBe-Kb [335]
  • AlphaFold DB [302]
  • InterPro [193]
  • Gene Ontology [182]
  • Pfam [164]
  • ChEBI [57]
  • ChEMBL [53]
  • DrugBank [53]
  • Complex Portal [33]
  • SCOP2 [23]
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EMD-74421
Download Map
3D View
8 nm Cartwheel Subunit from Trichonympha spp.
CryoEM
Release date: Sept. 2, 2026
Resolution: 7.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9zmk
Q-score: 0.119
Similar entry percentile: 40%

Rowsell CM, Arin A, Bui KH

PNAS (2026) [ DOI: doi:10.1073/pnas.2612170123 ]

EMD-74424
Download Map
3D View
8 nm Cartwheel Central Hub from Trichonympha spp.
CryoEM
Release date: Sept. 2, 2026
Resolution: 10.9 Å
EM Method: Subtomogram averaging

Rowsell CM, Arin A, Bui KH

PNAS (2026) [ DOI: doi:10.1073/pnas.2612170123 ]

EMD-74426
Download Map
3D View
16nm Cartwheel Central Hub from Trichonympha spp.
CryoEM
Release date: Sept. 2, 2026
Resolution: 12.2 Å
EM Method: Subtomogram averaging

Rowsell CM, Arin A, Bui KH

PNAS (2026) [ DOI: doi:10.1073/pnas.2612170123 ]

EMD-74427
Download Map
3D View
16 nm Cartwheel Subunit from Trichonympha spp.
CryoEM
Release date: Sept. 2, 2026
Resolution: 8.7 Å
EM Method: Subtomogram averaging

Rowsell CM, Arin A, Bui KH

PNAS (2026) [ DOI: doi:10.1073/pnas.2612170123 ]

EMD-76289
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3D View
16nm Microtubule Triplet from Trichonympha spp.
CryoEM
Release date: Sept. 2, 2026
Resolution: 14.4 Å
EM Method: Subtomogram averaging

Rowsell CM, Arin A, Bui KH

PNAS (2026) [ DOI: doi:10.1073/pnas.2612170123 ]

EMD-59277
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3D View
Cryo-ET STA of mature HERV-K hexameric capsomer
CryoEM
Release date: Aug. 26, 2026
Resolution: 6.2 Å
EM Method: Subtomogram averaging

Lyu C, Peeples CA, Zhang Z, Shen Y, Hou Z, Harding EF, Hope J, Perilla JR, Katzourakis A, Zhang P

To Be Published

EMD-66624
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Structure of hemagglutinin from influenza A virions determined by sub-tomogram averaging
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9x6s

Zhang Z, Peng C, Zhang W, Liang J, Liu K, Chen Y, Zhang J, Liang R, Song Y, Li S

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-75998-3 ]

EMD-76383
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Subtomogram average structure of flagellar export apparatus and MS-ring in Borrelia burgdorferi
CryoEM
Release date: Aug. 26, 2026
Resolution: 16.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 12eq
Q-score: 0.041
Similar entry percentile: 34%

Yue J, Liu J

To Be Published

EMD-49696
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3D View
Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles
CryoEM
Release date: Aug. 19, 2026
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9nqy
Q-score: 0.191
Similar entry percentile: 70%

Upadhye VV, Lee JF, Ercanli N, Ricana C, Hinsley AC, Obr M, Autin L, Schur FKM, Aguilar HC, Dick RA

bioRxiv (2026) [ Pubmed: 42523209 DOI: doi:10.64898/2026.07.16.738223 ]

EMD-59302
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3D View
Consensus EM map of in-cell structure of chloroplast ribosome of Chlamydomonas reinhardtii
CryoEM
Release date: Aug. 19, 2026
Resolution: 4.9 Å
EM Method: Subtomogram averaging

Hou Z, Shen Y, Zhang Z, Lu P, Katzourakis A, Zhang P

To Be Published

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Current Database

  • EMDB [3276]

Current status

  • REL [3276]

Sample type

  • Complex [1169]
  • Cellular component [797]
  • Cell [667]
  • Protein [660]
  • Virus [518]
  • Sample [451]
  • Ligand [68]
  • RNA [50]
  • Tissue [26]
  • Other [25]
  • DNA [2]

Organism

  • Homo sapiens [519]
  • Mus musculus [351]
  • Chlamydomonas reinhardtii [260]
  • Human immunodeficiency virus 1 [134]
  • Escherichia coli [115]
  • Rattus norvegicus [109]
  • Saccharomyces cerevisiae [97]
  • Tetrahymena thermophila [71]
  • Severe acute respiratory syndrome coronavirus [70]
  • Mycoplasma pneumoniae [68]
  • Oryctolagus cuniculus [55]
  • Dictyostelium discoideum [50]
  • Schizosaccharomyces pombe [35]
  • Borrelia burgdorferi [32]
  • Caenorhabditis elegans [30]
  • Sus scrofa [30]
  • Bos taurus [28]
  • Drosophila melanogaster [27]
  • Chikungunya virus [26]
  • Rous sarcoma virus [25]
  • Campylobacter jejuni [25]
  • Plasmodium falciparum [24]
  • Xenopus laevis [23]
  • Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [21]
  • Myxococcus xanthus [21]
  • Vibrio cholerae [21]
  • Human herpesvirus 1 [20]
  • Campylobacter jejuni [20]
  • Escherichia coli [20]
  • Human immunodeficiency virus 1 [20]
  • Sus scrofa [17]
  • Vaccinia virus [15]
  • (no species) [13]
  • Human herpesvirus 3 [13]
  • Measles morbillivirus [13]
  • Primate t-lymphotropic virus 1 [13]
  • Legionella pneumophila [13]
  • Danio rerio [13]
  • Influenza a virus [12]
  • Simian immunodeficiency virus [12]
  • Trypanosoma brucei [12]
  • Synthetic construct [11]
  • Toxoplasma gondii [11]
  • Saccharomyces cerevisiae [11]
  • Mammalian orthoreovirus [10]
  • Rift valley fever phlebovirus [10]
  • Zaire ebolavirus [10]
  • Equine infectious anemia virus [9]
  • Streptococcus pneumoniae [9]
  • Mycobacterium phage bxb1 [9]
  • Toxoplasma gondii [9]
  • Chaetomium thermophilum [9]
  • Salmonella enterica [9]
  • Canis lupus [9]
  • Unidentified influenza virus [8]
  • Deltainfluenzavirus influenzae [8]
  • Influenza a virus [8]
  • Thermus thermophilus [8]
  • Human herpesvirus 8 [8]
  • Aggregatibacter actinomycetemcomitans [8]
  • (no species) [7]
  • Enterobacteria phage t4 [7]
  • Shigella flexneri [7]
  • Synechococcus elongatus [7]
  • Murine leukemia virus [7]
  • Caulobacter vibrioides [7]
  • Chaetomium thermophilum [7]
  • Pseudomonas aeruginosa [7]
  • Rotavirus a [7]
  • Varicellovirus suidalpha1 [7]
  • Cryptosporidium parvum [7]
  • (no species) [7]
  • Strongylocentrotus purpuratus [7]
  • Equus caballus [7]
  • Avian infectious bursal disease virus [6]
  • Human respirovirus 3 [6]
  • Flock house virus [6]
  • Enterococcus faecium [6]
  • Agricanvirus ray [6]
  • Helicobacter pylori [6]
  • Neospora caninum [6]
  • Pseudoalteromonas luteoviolacea [6]
  • Dictyostelium discoideum [6]
  • Tetrahymena thermophila [6]
  • Paramecium tetraurelia [6]
  • Torpedo marmorata [6]
  • Gallus gallus [6]
  • Salmonella phage p22 [5]
  • Human respiratory syncytial virus [5]
  • Synechocystis sp. pcc 6803 [5]
  • Lassa mammarenavirus [5]
  • Enterovirus c [5]
  • Orthoebolavirus zairense [5]
  • Aureispira sp. ccb-qb1 [5]
  • Pseudomonas phage 201phi2-1 [5]
  • 2056194 [5]
  • Eastern chimpanzee simian foamy virus [5]
  • Porcine epidemic diarrhea virus [5]
  • Mycoplasma genitalium [5]
  • Porcine epidemic diarrhea virus [5]

EM Method

  • Subtomogram averaging [3276]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [17]
  • ≥ 3Å and < 4Å [76]
  • ≥ 4Å and < 5Å [111]
  • ≥ 5Å and < 6Å [67]
  • ≥ 6Å and < 8Å [262]
  • ≥ 8Å and < 12Å [509]
  • ≥ 12Å and < 16Å [274]
  • ≥ 16Å and < 20Å [229]
  • ≥ 20Å and < 30Å [621]
  • ≥ 30Å [1008]

Model molecular weight

  • 0-50 kDa [13]
  • 50-100 kDa [16]
  • 100-250 kDa [74]
  • 250-500 kDa [56]
  • 500-1000 kDa [52]
  • 1-2 MDa [36]
  • 2-5 MDa [48]
  • 5-10 MDa [8]
  • > 10 MDa [12]

Release Date

  • 2026 [343]
  • 2025 [452]
  • 2024 [494]
  • 2023 [371]
  • 2022 [351]
  • 2021 [217]
  • 2020 [178]
  • 2019 [144]
  • 2018 [128]
  • 2017 [107]
  • 2016 [123]
  • 2015 [74]
  • 2014 [73]
  • 2013 [82]
  • 2012 [69]
  • 2011 [24]
  • 2010 [18]
  • 2009 [11]
  • 2008 [4]
  • 2007 [5]
  • 2006 [8]

Author by name

  • Beck M [238]
  • Liu J [158]
  • Mahamid J [151]
  • Zhang P [147]
  • Baumeister W [145]
  • Turonova B [141]
  • Plitzko JM [132]
  • Briggs JAG [128]
  • Agard DA [122]
  • Kreysing JP [109]
  • Zhu Y [109]
  • Jensen GJ [105]
  • Li S [105]
  • Chiu W [99]
  • Guo Q [99]
  • Engel BD [97]
  • Hutchings J [92]
  • Villa E [87]
  • Beck F [83]
  • Grange M [83]
  • Kikkawa M [83]
  • Schmid MF [83]
  • Chang YW [81]
  • Forster F [78]
  • Xue L [78]
  • Krausslich HG [77]
  • Hummer G [76]
  • Welsch S [76]
  • Pfeffer S [75]
  • Kotecha A [71]
  • Oda T [71]
  • Schaffer M [71]
  • Bui KH [70]
  • Chen L [70]
  • Obarska-kosinska A [70]
  • Schur FKM [70]
  • Yanagisawa H [70]
  • Taniguchi R [68]
  • Kudryashev M [67]
  • Obr M [67]
  • Khusainov I [65]
  • Pilhofer M [65]
  • Wan W [65]
  • Beeby M [63]
  • Kosinski J [63]
  • Xu J [63]
  • Bartesaghi A [62]
  • Sun F [61]
  • Zhang X [61]
  • Cramer P [58]
  • Pigino G [58]
  • Chen M [57]
  • Nicastro D [57]
  • Tegunov D [57]
  • Cruz-leon S [55]
  • Rappsilber J [55]
  • Chen Z [54]
  • Li Z [53]
  • Ni T [53]
  • Zhou ZH [53]
  • Briggs JA [52]
  • Dumoux M [52]
  • Hoffmann PC [52]
  • Zhao X [52]
  • Zimmerli CE [52]
  • Chen Y [51]
  • Fedry J [51]
  • Grunewald K [51]
  • Martinez-sanchez A [51]
  • Yu Z [51]
  • Dick RA [50]
  • Liu Y [50]
  • Subramaniam S [50]
  • Lenz S [49]
  • Xing H [49]
  • Zhang Z [49]
  • Chang Y-W [48]
  • Hou Z [48]
  • Wang H [48]
  • Berger C [46]
  • Shi Y [46]
  • Fernandez JJ [45]
  • Vale RD [45]
  • Wang Z [45]
  • Zhang J [45]
  • Mosalaganti S [44]
  • Zhu X [44]
  • Bork P [43]
  • Fronik S [43]
  • Naismith JH [43]
  • Shen Y [43]
  • Suslov S [43]
  • Wang X [43]
  • Zhang Y [43]
  • Hendrixson DR [42]
  • Wang J [42]
  • Chakraborty S [41]
  • Howes SC [41]
  • Klena N [41]
  • Toro-nahuelpan M [41]

Author by ORCID

  • Beck M [148]
  • Mahamid J [142]
  • Kreysing JP [109]
  • Briggs JAG [97]
  • Engel BD [90]
  • Turonova B [90]
  • Guo Q [89]
  • Chiu W [87]
  • Agard DA [87]
  • Zhang P [86]
  • Plitzko JM [84]
  • Chang YW [81]
  • Grange M [81]
  • Liu J [78]
  • Xue L [78]
  • Forster F [77]
  • Hummer G [76]
  • Kikkawa M [74]
  • Oda T [71]
  • Schmid MF [66]
  • Khusainov I [65]
  • Obarska-kosinska A [65]
  • Kosinski J [63]
  • Pfeffer S [61]
  • Pilhofer M [60]
  • Yanagisawa H [58]
  • Schur FKM [58]
  • Cramer P [57]
  • Baumeister W [56]
  • Welsch S [56]
  • Rappsilber J [53]
  • Li S [53]
  • Bui KH [53]
  • Hoffmann PC [52]
  • Briggs JA [52]
  • Zimmerli CE [52]
  • Pigino G [51]
  • Grunewald K [49]
  • Xing H [49]
  • Krausslich HG [49]
  • Lenz S [49]
  • Chen M [49]
  • Taniguchi R [47]
  • Berger C [46]
  • Schaffer M [45]
  • Kotecha A [45]
  • Dumoux M [44]
  • Fernandez JJ [44]
  • Subramaniam S [44]
  • Bork P [43]
  • Wan W [43]
  • Fronik S [43]
  • Nicastro D [42]
  • Toro-nahuelpan M [41]
  • Zhu Y [41]
  • Zhou ZH [41]
  • Li S [40]
  • Guichard P [39]
  • Ludtke SJ [39]
  • Kudryashev M [39]
  • Zimmermann-kogadeeva M [38]
  • Beeby M [38]
  • Ni T [38]
  • Sun F [38]
  • Weiss GL [38]
  • Shiozaki M [38]
  • Mattei S [36]
  • Mosalaganti S [36]
  • Hagen WJH [35]
  • Huiskonen JT [35]
  • Lishko PV [35]
  • Watson H [34]
  • Rettberg LA [34]
  • Chakraborty S [34]
  • Wilfling F [34]
  • Des Georges A [34]
  • Shi Y [33]
  • Villa E [33]
  • Echeverria I [33]
  • Hendrixson DR [32]
  • Skinner WM [32]
  • Zhu Y [32]
  • Chen Z [32]
  • Duquette M [32]
  • Silva J [31]
  • Hagen WJ [31]
  • Faller WJ [31]
  • Yin G [31]
  • Ke Z [31]
  • Soni N [31]
  • Ricana CL [31]
  • Mechulam Y [31]
  • Briegel A [31]
  • Tai L [30]
  • Vale RD [30]
  • Morado DR [30]
  • Andino-frydman E [30]
  • Daum B [28]
  • Martinez-sanchez A [28]
  • Raunser S [27]

Journal

  • NAT COMMUN [468]
  • BIORXIV [287]
  • PNAS [261]
  • SCIENCE [243]
  • NATURE [233]
  • TO BE PUBLISHED [210]
  • CELL [166]
  • ELIFE [143]
  • SCI ADV [135]
  • NAT METHODS [124]
  • NAT STRUCT MOL BIOL [115]
  • EMBO J [96]
  • MOL CELL [82]
  • NAT MICROBIOL [81]
  • J CELL BIOL [70]
  • MOL BIOL CELL [60]
  • PLOS PATHOG [55]
  • J STRUCT BIOL [49]
  • J VIROL [48]
  • STRUCTURE [46]
  • MBIO [38]
  • CURR BIOL [32]
  • EMBO REP [28]
  • NUCLEIC ACIDS RES [26]
  • COMMUN BIOL [25]
  • MOL MICROBIOL [22]
  • CELL DISCOV [21]
  • CELL RES [20]
  • LIFE SCI ALLIANCE [19]
  • CELL REP [18]
  • NAT CELL BIOL [17]
  • PLOS BIOL [16]
  • J CELL SCI [15]
  • NAT PLANTS [15]
  • J BACTERIOL [14]
  • CELL HOST MICROBE [13]
  • DEV CELL [13]
  • SCI REP [13]
  • J MOL BIOL [12]
  • FRONT CELL INFECT MICROBIOL [9]
  • OPEN BIOL [9]
  • CYTOSKELETON [8]
  • PLOS ONE [8]
  • IUCRJ [7]
  • FEBS LETT [6]
  • J BIOL CHEM [6]
  • J STRUCT BIOL X [6]
  • PLOS GENET [6]
  • SIGNAL TRANSDUCT TARGET THER [6]
  • FRONT MICROBIOL [5]
  • ISCIENCE [5]
  • PLOS NEGL TROP DIS [5]
  • INT J MOL SCI [4]
  • J VIS EXP [4]
  • NAT PROTOC [4]
  • BIOCHEMISTRY [3]
  • CELL.MOL.LIFE SCI. [3]
  • FASEB J [3]
  • MSPHERE [3]
  • PROTEIN CELL [3]
  • VIRUSES [3]
  • VITA [3]
  • ACS CHEM BIOL [2]
  • AIMS BIOPHYS [2]
  • BIOMACROMOLECULES [2]
  • FEBS J [2]
  • GENES CELLS [2]
  • J FUNGI [2]
  • J GEN VIROL [2]
  • J.BIOCHEM. [2]
  • NAT NEUROSCI [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
  • ADV SCI [1]
  • AIMS BIOPHYSICS [1]
  • BIOCHEM J [1]
  • BIOL IMAGING [1]
  • BIOMOLECULES [1]
  • BIORXIV.ORG [1]
  • CELLS [1]
  • FEBS OPEN BIO [1]
  • FRONT CELL DEV BIOL [1]
  • FRONT MOL BIOSCI [1]
  • INFECT.IMMUN. [1]
  • J MUSCLE RES CELL MOTIL [1]
  • J.MUSCLE RES.CELL.MOTIL. [1]
  • KIDNEY INT [1]
  • NANOTECHNOL RUSSIA [1]
  • PLANT PHYSIOL [1]
  • PNAS NEXUS [1]
  • PROTEIN SCI [1]
  • SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]

Software

  • RELION [1058]
  • IMOD [439]
  • WARP [416]
  • DYNAMO [343]
  • PEET [236]
  • PYTOM [150]
  • CTFFIND [133]
  • EMAN2 [116]
  • MATLAB [106]
  • EMCLARITY [92]
  • AV3 [82]
  • NOVACTF [73]
  • NOVASTA [62]
  • TOM TOOLBOX [62]
  • CHIMERA [58]
  • GCTF [56]
  • M [54]
  • STOPGAP [54]
  • CRYOLO [53]
  • CTFPHASEFLIP [53]
  • TOM [49]
  • IMOD, PEET [34]
  • I3 [26]
  • SUBTOM [24]
  • UCSF CHIMERA [23]
  • IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
  • TOMO3D [19]
  • IMOD, TOMO3D, PEET [18]
  • EMAN [16]
  • ETOMO [16]
  • PROTOMO [16]
  • IMOD, DYNAMO [15]
  • IMOD, TOMO3D [15]
  • XMIPP [14]
  • IMOD, RAPTOR, PROTOMO [13]
  • PEET, RUBY-HELIX [13]
  • SPIDER [12]
  • CISTEM [11]
  • IMOD, PROTOMO [11]
  • UCSF CHIMERAX [11]
  • AMIRA [10]
  • IMOD, BSOFT [10]
  • AMIRAFPM [9]
  • BSOFT [9]
  • TOM, AV3 [9]
  • TOM, TOOLBOX, BSOFT, XMIPP [9]
  • TOMOCTF [9]
  • EMIRA [8]
  • IMOD, PROTOMO, I3, EMAN [7]
  • IMOD, TOM, AV3 [7]
  • ARETOMO [6]
  • AV3, TOM, PYTOM [6]
  • I3, PROTOMO [6]
  • IMOD AND IN-HOUSE PROCEDURES [6]
  • IMOD, PRIISM/IVE [6]
  • PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
  • XMIPP, ML, TOMO [6]
  • IMOD, TOM, PACKAGE, MATLAB [5]
  • IMOD AND BSOFT [4]
  • IMOD, EMAN, EMAN2, TOMOHUNTER [4]
  • IMOD, ETOMO, , PEET , SPIDER [4]
  • IMOD, PEET, BSOFT [4]
  • IMOD/PEET [4]
  • IPET, AND, FETR [4]
  • JSUBTOMO [4]
  • PROJALIGN [4]
  • SUPER-SAMPLING SART [4]
  • 3DMOD [3]
  • CRYOSPARC [3]
  • IMOD, XMIPP, TOMO3D [3]
  • TOM, AV3, PYTOM [3]
  • TOM/AV3, MATLAB [3]
  • TOMOALIGN [3]
  • CHIMERA, SEGGER [2]
  • CRYODRGN [2]
  • EM [2]
  • ETOMO, DYNAMO [2]
  • ETOMO, TOM, PYTOM [2]
  • IMOD, BSOFT, JSUBTOMO [2]
  • IMOD, EMAN2 [2]
  • IMOD, PEET, BSOFT, EMAN2, SPARX [2]
  • IMOD, PEET, SPIDER [2]
  • IMOD, SPIDER, BSOFT [2]
  • IMOD, TOMO3D, RELION [2]
  • IMOD, TOMOHUNTER [2]
  • MOTIONCORR, IMOD, TOMOCTF, PEET [2]
  • MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
  • MRC, IMOD, IVE [2]
  • PROTOMO AND I3 [2]
  • PROTOMO, IMOD [2]
  • APPION [1]
  • BSOFT, JSUBTOMO [1]
  • CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
  • CHIMERA, MDFF [1]
  • CHIMERA, VMD, MDFF [1]
  • CHIMERA, X-PLOR [1]
  • COMET [1]
  • COOT [1]
  • EM-PACKAGE, TOM FOR MATLAB [1]
  • EMAN, HIMPOSE, SPIDER [1]

Microscope

  • FEI TITAN KRIOS [1634]
  • TFS KRIOS [798]
  • FEI POLARA 300 [294]
  • FEI TALOS ARCTICA [99]
  • FEI TECNAI F20 [71]
  • FEI TECNAI F30 [50]
  • FEI TECNAI 20 [46]
  • JEOL 2200FS [45]
  • JEOL 3100FFC [44]
  • FEI TITAN [39]
  • TFS GLACIOS [31]
  • OTHER [20]
  • FEI TECNAI 12 [17]
  • JEOL 3200FSC [16]
  • JEOL 2100 [13]
  • FEI TECNAI ARCTICA [10]
  • FEI/PHILIPS CM300FEG/T [10]
  • JEOL 3100FEF [7]
  • TFS TALOS [7]
  • JEOL 2010F [5]
  • JEOL 2200FSC [5]
  • FEI/PHILIPS CM300FEG/ST [4]
  • FEI/PHILIPS CM200FEG [3]
  • JEOL 2100F [3]
  • JEOL CRYO ARM 300 [3]
  • TFS TITAN THEMIS [3]

Electron Source

  • FIELD EMISSION GUN [3215]
  • LAB6 [49]
  • OTHER [10]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [921]
  • GATAN K3 BIOQUANTUM 6K X 4K [500]
  • GATAN K3 6K X 4K [470]
  • FEI FALCON IV 4K X 4K [311]
  • GATAN K2 QUANTUM 4K X 4K [291]
  • TFS FALCON 4I 4K X 4K [178]
  • GATAN ULTRASCAN 4000 4K X 4K [86]
  • TVIPS TEMCAM-F416 4K X 4K [70]
  • GATAN ULTRASCAN 1000 2K X 2K [65]
  • FEI FALCON II 4K X 4K [62]
  • GENERIC CCD [47]
  • GATAN MULTISCAN [33]
  • TVIPS TEMCAM-F415 4K X 4K [31]
  • FEI FALCON III 4K X 4K [27]
  • GATAN K2 4K X 4K [26]
  • GATAN K3 BIOCONTINUUM 6K X 4K [22]
  • GENERIC GATAN [18]
  • DIRECT ELECTRON DE-20 5K X 3K [15]
  • FEI FALCON I 4K X 4K [13]
  • TVIPS TEMCAM-F216 2K X 2K [10]
  • OTHER [7]
  • FEI EAGLE 4K X 4K [6]
  • GATAN K2 BASE 4K X 4K [6]
  • GENERIC GATAN 2K X 2K [6]
  • GENERIC TVIPS 4K X 4K [6]
  • DIRECT ELECTRON DE-12 4K X 3K [5]
  • TVIPS TEMCAM-F224 2K X 2K [5]
  • DIRECT ELECTRON DE-16 4K X 4K [3]
  • FEI EAGLE 2K X 2K [2]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GENERIC GATAN 4K X 4K [1]

External links

  • PDB [3173]
  • UniProt [393]
  • EMPIAR [381]
  • PDBe-Kb [335]
  • AlphaFold DB [302]
  • InterPro [193]
  • Gene Ontology [182]
  • Pfam [164]
  • ChEBI [57]
  • ChEMBL [53]
  • DrugBank [53]
  • Complex Portal [33]
  • SCOP2 [23]