Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
Edit your search query here and hit Return to execute it:
subtomogramAveraging
Filter By
Current Database
- EMDB [2933]
Current status
- REL [2933]
Sample type
- Complex [1060]
- Cellular component [744]
- Protein [592]
- Cell [535]
- Virus [473]
- Sample [451]
- Ligand [56]
- RNA [47]
- Other [22]
- Tissue [18]
- DNA [2]
Organism
- Homo sapiens [446]
- Mus musculus [308]
- Chlamydomonas reinhardtii [240]
- Human immunodeficiency virus 1 [125]
- Escherichia coli [106]
- Saccharomyces cerevisiae [94]
- Tetrahymena thermophila [68]
- Mycoplasma pneumoniae [67]
- Severe acute respiratory syndrome coronavirus [64]
- Rattus norvegicus [63]
- Dictyostelium discoideum [48]
- Schizosaccharomyces pombe [32]
- Oryctolagus cuniculus [32]
- Borrelia burgdorferi [30]
- Caenorhabditis elegans [30]
- Sus scrofa [28]
- Bos taurus [28]
- Chikungunya virus [26]
- Drosophila melanogaster [26]
- Rous sarcoma virus [25]
- Campylobacter jejuni [25]
- Plasmodium falciparum [23]
- Xenopus laevis [23]
- Myxococcus xanthus [21]
- Vibrio cholerae [21]
- Human herpesvirus 1 [20]
- Campylobacter jejuni [20]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [19]
- Escherichia coli [17]
- Sus scrofa [17]
- Measles morbillivirus [13]
- Primate t-lymphotropic virus 1 [13]
- Danio rerio [13]
- (no species) [12]
- Vaccinia virus [12]
- Simian immunodeficiency virus [12]
- Trypanosoma brucei [12]
- Human immunodeficiency virus 1 [12]
- Toxoplasma gondii [11]
- Mammalian orthoreovirus [10]
- Influenza a virus [10]
- Rift valley fever phlebovirus [10]
- Zaire ebolavirus [10]
- Synthetic construct [10]
- Legionella pneumophila [10]
- Equine infectious anemia virus [9]
- Streptococcus pneumoniae [9]
- Mycobacterium phage bxb1 [9]
- Toxoplasma gondii [9]
- Chaetomium thermophilum [9]
- Canis lupus [9]
- Unidentified influenza virus [8]
- Deltainfluenzavirus influenzae [8]
- Human herpesvirus 8 [8]
- Saccharomyces cerevisiae [8]
- Aggregatibacter actinomycetemcomitans [8]
- Salmonella enterica [8]
- (no species) [7]
- Enterobacteria phage t4 [7]
- Shigella flexneri [7]
- Synechococcus elongatus [7]
- Murine leukemia virus [7]
- Caulobacter vibrioides [7]
- Chaetomium thermophilum [7]
- Influenza a virus [7]
- Pseudomonas aeruginosa [7]
- Rotavirus a [7]
- Varicellovirus suidalpha1 [7]
- Cryptosporidium parvum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Avian infectious bursal disease virus [6]
- Human respirovirus 3 [6]
- Flock house virus [6]
- Agricanvirus ray [6]
- Helicobacter pylori [6]
- Neospora caninum [6]
- Pseudoalteromonas luteoviolacea [6]
- Tetrahymena thermophila [6]
- Paramecium tetraurelia [6]
- Torpedo marmorata [6]
- Salmonella phage p22 [5]
- Human respiratory syncytial virus [5]
- Synechocystis sp. pcc 6803 [5]
- Lassa mammarenavirus [5]
- Enterovirus c [5]
- Orthoebolavirus zairense [5]
- Aureispira sp. ccb-qb1 [5]
- Pseudomonas phage 201phi2-1 [5]
- 2056194 [5]
- Eastern chimpanzee simian foamy virus [5]
- Porcine epidemic diarrhea virus [5]
- Mycoplasma genitalium [5]
- Porcine epidemic diarrhea virus [5]
- Teranympha mirabilis [5]
- Methanospirillum hungatei [5]
- Arabidopsis thaliana [5]
- Synechococcus virus syn5 [5]
- Trypanosoma brucei [5]
- Saccharomyces cerevisiae [5]
EM Method
- Subtomogram averaging [2933]
Resolution
- < 2Å [3]
- ≥ 2Å and < 3Å [9]
- ≥ 3Å and < 4Å [65]
- ≥ 4Å and < 5Å [86]
- ≥ 5Å and < 6Å [44]
- ≥ 6Å and < 8Å [216]
- ≥ 8Å and < 12Å [435]
- ≥ 12Å and < 16Å [235]
- ≥ 16Å and < 20Å [205]
- ≥ 20Å and < 30Å [570]
- ≥ 30Å [968]
Model molecular weight
- 0-50 kDa [13]
- 50-100 kDa [16]
- 100-250 kDa [74]
- 250-500 kDa [53]
- 500-1000 kDa [47]
- 1-2 MDa [35]
- 2-5 MDa [48]
- 5-10 MDa [7]
- > 10 MDa [11]
Release Date
- 2025 [452]
- 2024 [494]
- 2023 [371]
- 2022 [351]
- 2021 [217]
- 2020 [178]
- 2019 [144]
- 2018 [128]
- 2017 [107]
- 2016 [123]
- 2015 [74]
- 2014 [73]
- 2013 [82]
- 2012 [69]
- 2011 [24]
- 2010 [18]
- 2009 [11]
- 2008 [4]
- 2007 [5]
- 2006 [8]
Author by name
- Beck M [234]
- Liu J [154]
- Mahamid J [149]
- Baumeister W [139]
- Turonova B [138]
- Plitzko JM [125]
- Briggs JAG [117]
- Zhang P [112]
- Kreysing JP [106]
- Agard DA [103]
- Jensen GJ [101]
- Li S [98]
- Zhu Y [96]
- Engel BD [87]
- Grange M [84]
- Chang YW [81]
- Chiu W [81]
- Beck F [80]
- Kikkawa M [80]
- Forster F [77]
- Krausslich HG [77]
- Xue L [77]
- Guo Q [76]
- Villa E [76]
- Welsch S [75]
- Schmid MF [73]
- Hummer G [72]
- Oda T [71]
- Schaffer M [71]
- Obarska-kosinska A [69]
- Pfeffer S [69]
- Schur FKM [69]
- Taniguchi R [68]
- Yanagisawa H [67]
- Obr M [65]
- Hutchings J [64]
- Beeby M [63]
- Kosinski J [63]
- Pilhofer M [63]
- Bartesaghi A [62]
- Bui KH [62]
- Xu J [61]
- Wan W [60]
- Cramer P [58]
- Pigino G [58]
- Tegunov D [57]
- Rappsilber J [55]
- Briggs JA [54]
- Nicastro D [54]
- Cruz-leon S [53]
- Kotecha A [53]
- Li Z [53]
- Zimmerli CE [52]
- Fedry J [51]
- Grunewald K [51]
- Hoffmann PC [51]
- Martinez-sanchez A [51]
- Sun F [51]
- Subramaniam S [50]
- Dick RA [49]
- Khusainov I [49]
- Lenz S [49]
- Xing H [49]
- Zhou ZH [49]
- Chang Y-W [48]
- Ni T [48]
- Chen M [47]
- Kudryashev M [47]
- Berger C [46]
- Shi Y [46]
- Wang H [46]
- Zhao X [46]
- Chen L [45]
- Fernandez JJ [45]
- Vale RD [45]
- Yu Z [45]
- Chen Y [44]
- Dumoux M [44]
- Liu Y [44]
- Bork P [43]
- Naismith JH [43]
- Suslov S [43]
- Fronik S [42]
- Hendrixson DR [42]
- Mosalaganti S [42]
- Howes SC [41]
- Klena N [41]
- Toro-nahuelpan M [41]
- Alvarez Viar G [40]
- Klumpe S [40]
- Ludtke SJ [40]
- Wang Z [40]
- Chakraborty S [39]
- Guichard P [39]
- Ishikawa T [39]
- Wang J [39]
- Zila V [39]
- Erdmann PS [38]
- Foerster F [38]
- Greenan GA [38]
Author by ORCID
- Beck M [145]
- Mahamid J [140]
- Kreysing JP [106]
- Briggs JAG [92]
- Turonova B [88]
- Plitzko JM [84]
- Grange M [82]
- Chang YW [81]
- Agard DA [81]
- Engel BD [78]
- Forster F [77]
- Chiu W [77]
- Xue L [77]
- Kikkawa M [74]
- Hummer G [72]
- Guo Q [72]
- Oda T [71]
- Zhang P [69]
- Obarska-kosinska A [64]
- Kosinski J [63]
- Pilhofer M [59]
- Yanagisawa H [58]
- Schur FKM [58]
- Cramer P [57]
- Baumeister W [56]
- Pfeffer S [55]
- Welsch S [55]
- Schmid MF [55]
- Rappsilber J [53]
- Li S [53]
- Bui KH [53]
- Liu J [52]
- Briggs JA [52]
- Zimmerli CE [52]
- Hoffmann PC [51]
- Khusainov I [49]
- Grunewald K [49]
- Xing H [49]
- Krausslich HG [49]
- Lenz S [49]
- Kotecha A [48]
- Taniguchi R [47]
- Berger C [46]
- Schaffer M [45]
- Dumoux M [44]
- Fernandez JJ [44]
- Subramaniam S [44]
- Bork P [43]
- Wan W [43]
- Toro-nahuelpan M [41]
- Zhou ZH [41]
- Nicastro D [39]
- Guichard P [39]
- Ludtke SJ [39]
- Chen M [39]
- Kudryashev M [39]
- Fronik S [39]
- Zimmermann-kogadeeva M [38]
- Beeby M [38]
- Sun F [38]
- Ni T [36]
- Weiss GL [36]
- Mosalaganti S [36]
- Hagen WJH [35]
- Zhu Y [34]
- Huiskonen JT [34]
- Watson H [34]
- Rettberg LA [34]
- Chakraborty S [34]
- Li S [34]
- Des Georges A [34]
- Echeverria I [33]
- Mattei S [32]
- Pigino G [32]
- Skinner WM [32]
- Chen Z [32]
- Hagen WJ [31]
- Faller WJ [31]
- Yin G [31]
- Ke Z [31]
- Ricana CL [31]
- Mechulam Y [31]
- Briegel A [31]
- Tai L [30]
- Vale RD [30]
- Andino-frydman E [30]
- Hendrixson DR [28]
- Raunser S [28]
- Wang Z [28]
- Martinez-sanchez A [28]
- Lishko PV [28]
- Zhou Y [27]
- Bartesaghi A [27]
- Frydman J [27]
- Morado DR [27]
- Borgnia MJ [26]
- Zhu Y [26]
- Gautel M [26]
- Prazak V [25]
- Liu Y [25]
Journal
- NAT COMMUN [399]
- PNAS [246]
- BIORXIV [227]
- SCIENCE [226]
- NATURE [221]
- CELL [164]
- TO BE PUBLISHED [158]
- ELIFE [138]
- SCI ADV [122]
- NAT METHODS [117]
- NAT STRUCT MOL BIOL [112]
- EMBO J [84]
- NAT MICROBIOL [69]
- J CELL BIOL [67]
- MOL CELL [67]
- MOL BIOL CELL [60]
- PLOS PATHOG [55]
- J STRUCT BIOL [49]
- J VIROL [48]
- STRUCTURE [45]
- MBIO [35]
- CURR BIOL [32]
- EMBO REP [24]
- MOL MICROBIOL [22]
- CELL DISCOV [21]
- COMMUN BIOL [21]
- CELL RES [20]
- LIFE SCI ALLIANCE [19]
- NAT CELL BIOL [17]
- PLOS BIOL [16]
- J CELL SCI [15]
- NAT PLANTS [15]
- CELL REP [14]
- J BACTERIOL [14]
- CELL HOST MICROBE [13]
- DEV CELL [13]
- SCI REP [13]
- J MOL BIOL [12]
- NUCLEIC ACIDS RES [10]
- FRONT CELL INFECT MICROBIOL [9]
- OPEN BIOL [9]
- CYTOSKELETON [8]
- PLOS ONE [8]
- J BIOL CHEM [6]
- PLOS GENET [6]
- SIGNAL TRANSDUCT TARGET THER [6]
- FRONT MICROBIOL [5]
- ISCIENCE [5]
- PLOS NEGL TROP DIS [5]
- INT J MOL SCI [4]
- NAT PROTOC [4]
- BIOCHEMISTRY [3]
- FASEB J [3]
- FEBS LETT [3]
- MSPHERE [3]
- PROTEIN CELL [3]
- VIRUSES [3]
- BIOMACROMOLECULES [2]
- FEBS J [2]
- GENES CELLS [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J.BIOCHEM. [2]
- NAT NEUROSCI [2]
- ACTA CRYSTALLOGR D STRUCT BIOL [1]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
- ADV SCI [1]
- BIOCHEM J [1]
- BIOL IMAGING [1]
- BIOMOLECULES [1]
- CELLS [1]
- FEBS OPEN BIO [1]
- FRONT CELL DEV BIOL [1]
- FRONT MOL BIOSCI [1]
- INFECT.IMMUN. [1]
- J MUSCLE RES CELL MOTIL [1]
- J VIS EXP [1]
- J.MUSCLE RES.CELL.MOTIL. [1]
- KIDNEY INT [1]
- NANOTECHNOL RUSSIA [1]
- PLANT PHYSIOL [1]
- PNAS NEXUS [1]
- PROTEIN SCI [1]
- SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]
Software
- RELION [802]
- IMOD [410]
- DYNAMO [306]
- WARP [275]
- PEET [231]
- PYTOM [126]
- CTFFIND [120]
- MATLAB [106]
- EMAN2 [99]
- AV3 [81]
- NOVACTF [71]
- EMCLARITY [62]
- NOVASTA [61]
- TOM TOOLBOX [59]
- CHIMERA [58]
- STOPGAP [53]
- CRYOLO [49]
- CTFPHASEFLIP [49]
- TOM [49]
- IMOD, PEET [34]
- GCTF [32]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- SUBTOM [20]
- TOMO3D [19]
- UCSF CHIMERA [19]
- IMOD, TOMO3D, PEET [18]
- I3 [17]
- EMAN [16]
- ETOMO [16]
- PROTOMO [16]
- IMOD, DYNAMO [15]
- IMOD, TOMO3D [15]
- XMIPP [14]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- SPIDER [12]
- CISTEM [11]
- IMOD, PROTOMO [11]
- AMIRA [10]
- IMOD, BSOFT [10]
- AMIRAFPM [9]
- BSOFT [9]
- TOM, AV3 [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- TOMOCTF [9]
- EMIRA [8]
- UCSF CHIMERAX [8]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- AV3, TOM, PYTOM [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PRIISM/IVE [6]
- M [6]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
- XMIPP, ML, TOMO [6]
- IMOD, TOM, PACKAGE, MATLAB [5]
- IMOD AND BSOFT [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET, BSOFT [4]
- IMOD/PEET [4]
- IPET, AND, FETR [4]
- JSUBTOMO [4]
- PROJALIGN [4]
- SUPER-SAMPLING SART [4]
- 3DMOD [3]
- IMOD, XMIPP, TOMO3D [3]
- TOM, AV3, PYTOM [3]
- TOM/AV3, MATLAB [3]
- TOMOALIGN [3]
- CHIMERA, SEGGER [2]
- CRYODRGN [2]
- EM [2]
- ETOMO, DYNAMO [2]
- ETOMO, TOM, PYTOM [2]
- IMOD, BSOFT, JSUBTOMO [2]
- IMOD, EMAN2 [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, SPIDER, BSOFT [2]
- IMOD, TOMO3D, RELION [2]
- IMOD, TOMOHUNTER [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- MRC, IMOD, IVE [2]
- PROTOMO AND I3 [2]
- PROTOMO, IMOD [2]
- APPION [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- COMET [1]
- COOT [1]
- CRYOSPARC [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN, HIMPOSE, SPIDER [1]
- EMAN1 [1]
Microscope
- FEI TITAN KRIOS [1627]
- TFS KRIOS [495]
- FEI POLARA 300 [293]
- FEI TALOS ARCTICA [84]
- FEI TECNAI F20 [71]
- FEI TECNAI F30 [50]
- FEI TECNAI 20 [46]
- JEOL 2200FS [45]
- JEOL 3100FFC [44]
- FEI TITAN [39]
- TFS GLACIOS [22]
- OTHER [20]
- FEI TECNAI 12 [17]
- JEOL 3200FSC [16]
- JEOL 2100 [13]
- FEI/PHILIPS CM300FEG/T [10]
- FEI TECNAI ARCTICA [8]
- JEOL 3100FEF [7]
- TFS TALOS [7]
- JEOL 2010F [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/ST [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2100F [3]
Electron Source
- FIELD EMISSION GUN [2876]
- LAB6 [49]
- OTHER [6]
- TUNGSTEN HAIRPIN [2]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [900]
- GATAN K3 BIOQUANTUM 6K X 4K [441]
- GATAN K3 6K X 4K [383]
- GATAN K2 QUANTUM 4K X 4K [281]
- FEI FALCON IV 4K X 4K [244]
- TFS FALCON 4I 4K X 4K [88]
- GATAN ULTRASCAN 4000 4K X 4K [86]
- TVIPS TEMCAM-F416 4K X 4K [70]
- GATAN ULTRASCAN 1000 2K X 2K [65]
- FEI FALCON II 4K X 4K [62]
- GENERIC CCD [47]
- GATAN MULTISCAN [33]
- TVIPS TEMCAM-F415 4K X 4K [31]
- FEI FALCON III 4K X 4K [27]
- GATAN K2 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [18]
- GENERIC GATAN [18]
- DIRECT ELECTRON DE-20 5K X 3K [15]
- TVIPS TEMCAM-F216 2K X 2K [10]
- FEI FALCON I 4K X 4K [9]
- OTHER [7]
- FEI EAGLE 4K X 4K [6]
- GENERIC GATAN 2K X 2K [6]
- GENERIC TVIPS 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- GATAN K2 BASE 4K X 4K [4]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC GATAN 4K X 4K [1]
External links
- UniProt [372]
- EMPIAR [324]
- PDBe-Kb [317]
- PDB [305]
- AlphaFold DB [230]
- InterPro [184]
- Pfam [179]
- Gene Ontology [173]
- ChEBI [53]
- ChEMBL [51]
- DrugBank [49]
- Complex Portal [29]
- SCOP2 [23]
Release date: Dec. 24, 2025
Resolution: 7.82 Å
EM Method: Subtomogram averaging
Resolution: 7.82 Å
EM Method: Subtomogram averaging
Arndt WG, Ramezani A, Talledge N, Yu G, Yang H, Chen B, Perilla JR, Zhang W, Mansky LM
Nat Commun (2025) [ Pubmed: 41381513 DOI: doi:10.1038/s41467-025-67129-1 ]
Release date: Dec. 24, 2025
Resolution: 31.2 Å
EM Method: Subtomogram averaging
Resolution: 31.2 Å
EM Method: Subtomogram averaging
Lucic V, Oroczo D
To Be Published
Release date: Dec. 24, 2025
Resolution: 35.1 Å
EM Method: Subtomogram averaging
Resolution: 35.1 Å
EM Method: Subtomogram averaging
Lucic V, Oroczo-Borunda DH
To Be Published
Release date: Dec. 24, 2025
Resolution: 23.0 Å
EM Method: Subtomogram averaging
Resolution: 23.0 Å
EM Method: Subtomogram averaging
Radhakrishnan RM, Stokes L, Day M, Huis in t Veld PJ, Volkov VA
bioRxiv (2025) [ DOI: doi:10.1101/2025.07.06.663352 ]
Release date: Dec. 24, 2025
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Radhakrishnan RM, Stokes L, Day M, Huis in t Veld PJ, Volkov VA
bioRxiv (2025) [ DOI: doi:10.1101/2025.07.06.663352 ]
Release date: Dec. 24, 2025
Resolution: 22.0 Å
EM Method: Subtomogram averaging
Resolution: 22.0 Å
EM Method: Subtomogram averaging
Radhakrishnan RM, Stokes L, Day M, Huis in t Veld PJ, Volkov VA
bioRxiv (2025) [ DOI: doi:10.1101/2025.07.06.663352 ]
Release date: Dec. 24, 2025
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Radhakrishnan RM, Stokes L, Day M, Huis in t Veld PJ, Volkov VA
bioRxiv (2025) [ DOI: doi:10.1101/2025.07.06.663352 ]
Release date: Dec. 24, 2025
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Huang QJ, McDaniel CN, Griffith AA, Schiffer CA, Somasundaran M
J Vis Exp (2025) [ DOI: doi:10.3791/68636 Pubmed: 41284633 ]
Release date: Dec. 17, 2025
Resolution: 32.6 Å
EM Method: Subtomogram averaging
Resolution: 32.6 Å
EM Method: Subtomogram averaging
Feng X, Tachiyama S, He J, Zhu S, Zhao H, Botting JM, Liu Y, Chen Y, Hua C, Lara-Tejero M, Baker MAB, Gao X, Liu J, Gao B
To Be Published
Release date: Dec. 17, 2025
Resolution: 31.0 Å
EM Method: Subtomogram averaging
Resolution: 31.0 Å
EM Method: Subtomogram averaging
Feng X, Tachiyama S, He J, Zhu S, Zhao H, Botting JM, Liu Y, Chen Y, Hua C, Lara-Tejero M, Baker MAB, Gao X, Liu J, Gao B
To Be Published
Filter By
Current Database
- EMDB [2933]
Current status
- REL [2933]
Sample type
- Complex [1060]
- Cellular component [744]
- Protein [592]
- Cell [535]
- Virus [473]
- Sample [451]
- Ligand [56]
- RNA [47]
- Other [22]
- Tissue [18]
- DNA [2]
Organism
- Homo sapiens [446]
- Mus musculus [308]
- Chlamydomonas reinhardtii [240]
- Human immunodeficiency virus 1 [125]
- Escherichia coli [106]
- Saccharomyces cerevisiae [94]
- Tetrahymena thermophila [68]
- Mycoplasma pneumoniae [67]
- Severe acute respiratory syndrome coronavirus [64]
- Rattus norvegicus [63]
- Dictyostelium discoideum [48]
- Schizosaccharomyces pombe [32]
- Oryctolagus cuniculus [32]
- Borrelia burgdorferi [30]
- Caenorhabditis elegans [30]
- Sus scrofa [28]
- Bos taurus [28]
- Chikungunya virus [26]
- Drosophila melanogaster [26]
- Rous sarcoma virus [25]
- Campylobacter jejuni [25]
- Plasmodium falciparum [23]
- Xenopus laevis [23]
- Myxococcus xanthus [21]
- Vibrio cholerae [21]
- Human herpesvirus 1 [20]
- Campylobacter jejuni [20]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [19]
- Escherichia coli [17]
- Sus scrofa [17]
- Measles morbillivirus [13]
- Primate t-lymphotropic virus 1 [13]
- Danio rerio [13]
- (no species) [12]
- Vaccinia virus [12]
- Simian immunodeficiency virus [12]
- Trypanosoma brucei [12]
- Human immunodeficiency virus 1 [12]
- Toxoplasma gondii [11]
- Mammalian orthoreovirus [10]
- Influenza a virus [10]
- Rift valley fever phlebovirus [10]
- Zaire ebolavirus [10]
- Synthetic construct [10]
- Legionella pneumophila [10]
- Equine infectious anemia virus [9]
- Streptococcus pneumoniae [9]
- Mycobacterium phage bxb1 [9]
- Toxoplasma gondii [9]
- Chaetomium thermophilum [9]
- Canis lupus [9]
- Unidentified influenza virus [8]
- Deltainfluenzavirus influenzae [8]
- Human herpesvirus 8 [8]
- Saccharomyces cerevisiae [8]
- Aggregatibacter actinomycetemcomitans [8]
- Salmonella enterica [8]
- (no species) [7]
- Enterobacteria phage t4 [7]
- Shigella flexneri [7]
- Synechococcus elongatus [7]
- Murine leukemia virus [7]
- Caulobacter vibrioides [7]
- Chaetomium thermophilum [7]
- Influenza a virus [7]
- Pseudomonas aeruginosa [7]
- Rotavirus a [7]
- Varicellovirus suidalpha1 [7]
- Cryptosporidium parvum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Avian infectious bursal disease virus [6]
- Human respirovirus 3 [6]
- Flock house virus [6]
- Agricanvirus ray [6]
- Helicobacter pylori [6]
- Neospora caninum [6]
- Pseudoalteromonas luteoviolacea [6]
- Tetrahymena thermophila [6]
- Paramecium tetraurelia [6]
- Torpedo marmorata [6]
- Salmonella phage p22 [5]
- Human respiratory syncytial virus [5]
- Synechocystis sp. pcc 6803 [5]
- Lassa mammarenavirus [5]
- Enterovirus c [5]
- Orthoebolavirus zairense [5]
- Aureispira sp. ccb-qb1 [5]
- Pseudomonas phage 201phi2-1 [5]
- 2056194 [5]
- Eastern chimpanzee simian foamy virus [5]
- Porcine epidemic diarrhea virus [5]
- Mycoplasma genitalium [5]
- Porcine epidemic diarrhea virus [5]
- Teranympha mirabilis [5]
- Methanospirillum hungatei [5]
- Arabidopsis thaliana [5]
- Synechococcus virus syn5 [5]
- Trypanosoma brucei [5]
- Saccharomyces cerevisiae [5]
EM Method
- Subtomogram averaging [2933]
Resolution
- < 2Å [3]
- ≥ 2Å and < 3Å [9]
- ≥ 3Å and < 4Å [65]
- ≥ 4Å and < 5Å [86]
- ≥ 5Å and < 6Å [44]
- ≥ 6Å and < 8Å [216]
- ≥ 8Å and < 12Å [435]
- ≥ 12Å and < 16Å [235]
- ≥ 16Å and < 20Å [205]
- ≥ 20Å and < 30Å [570]
- ≥ 30Å [968]
Model molecular weight
- 0-50 kDa [13]
- 50-100 kDa [16]
- 100-250 kDa [74]
- 250-500 kDa [53]
- 500-1000 kDa [47]
- 1-2 MDa [35]
- 2-5 MDa [48]
- 5-10 MDa [7]
- > 10 MDa [11]
Release Date
- 2025 [452]
- 2024 [494]
- 2023 [371]
- 2022 [351]
- 2021 [217]
- 2020 [178]
- 2019 [144]
- 2018 [128]
- 2017 [107]
- 2016 [123]
- 2015 [74]
- 2014 [73]
- 2013 [82]
- 2012 [69]
- 2011 [24]
- 2010 [18]
- 2009 [11]
- 2008 [4]
- 2007 [5]
- 2006 [8]
Author by name
- Beck M [234]
- Liu J [154]
- Mahamid J [149]
- Baumeister W [139]
- Turonova B [138]
- Plitzko JM [125]
- Briggs JAG [117]
- Zhang P [112]
- Kreysing JP [106]
- Agard DA [103]
- Jensen GJ [101]
- Li S [98]
- Zhu Y [96]
- Engel BD [87]
- Grange M [84]
- Chang YW [81]
- Chiu W [81]
- Beck F [80]
- Kikkawa M [80]
- Forster F [77]
- Krausslich HG [77]
- Xue L [77]
- Guo Q [76]
- Villa E [76]
- Welsch S [75]
- Schmid MF [73]
- Hummer G [72]
- Oda T [71]
- Schaffer M [71]
- Obarska-kosinska A [69]
- Pfeffer S [69]
- Schur FKM [69]
- Taniguchi R [68]
- Yanagisawa H [67]
- Obr M [65]
- Hutchings J [64]
- Beeby M [63]
- Kosinski J [63]
- Pilhofer M [63]
- Bartesaghi A [62]
- Bui KH [62]
- Xu J [61]
- Wan W [60]
- Cramer P [58]
- Pigino G [58]
- Tegunov D [57]
- Rappsilber J [55]
- Briggs JA [54]
- Nicastro D [54]
- Cruz-leon S [53]
- Kotecha A [53]
- Li Z [53]
- Zimmerli CE [52]
- Fedry J [51]
- Grunewald K [51]
- Hoffmann PC [51]
- Martinez-sanchez A [51]
- Sun F [51]
- Subramaniam S [50]
- Dick RA [49]
- Khusainov I [49]
- Lenz S [49]
- Xing H [49]
- Zhou ZH [49]
- Chang Y-W [48]
- Ni T [48]
- Chen M [47]
- Kudryashev M [47]
- Berger C [46]
- Shi Y [46]
- Wang H [46]
- Zhao X [46]
- Chen L [45]
- Fernandez JJ [45]
- Vale RD [45]
- Yu Z [45]
- Chen Y [44]
- Dumoux M [44]
- Liu Y [44]
- Bork P [43]
- Naismith JH [43]
- Suslov S [43]
- Fronik S [42]
- Hendrixson DR [42]
- Mosalaganti S [42]
- Howes SC [41]
- Klena N [41]
- Toro-nahuelpan M [41]
- Alvarez Viar G [40]
- Klumpe S [40]
- Ludtke SJ [40]
- Wang Z [40]
- Chakraborty S [39]
- Guichard P [39]
- Ishikawa T [39]
- Wang J [39]
- Zila V [39]
- Erdmann PS [38]
- Foerster F [38]
- Greenan GA [38]
Author by ORCID
- Beck M [145]
- Mahamid J [140]
- Kreysing JP [106]
- Briggs JAG [92]
- Turonova B [88]
- Plitzko JM [84]
- Grange M [82]
- Chang YW [81]
- Agard DA [81]
- Engel BD [78]
- Forster F [77]
- Chiu W [77]
- Xue L [77]
- Kikkawa M [74]
- Hummer G [72]
- Guo Q [72]
- Oda T [71]
- Zhang P [69]
- Obarska-kosinska A [64]
- Kosinski J [63]
- Pilhofer M [59]
- Yanagisawa H [58]
- Schur FKM [58]
- Cramer P [57]
- Baumeister W [56]
- Pfeffer S [55]
- Welsch S [55]
- Schmid MF [55]
- Rappsilber J [53]
- Li S [53]
- Bui KH [53]
- Liu J [52]
- Briggs JA [52]
- Zimmerli CE [52]
- Hoffmann PC [51]
- Khusainov I [49]
- Grunewald K [49]
- Xing H [49]
- Krausslich HG [49]
- Lenz S [49]
- Kotecha A [48]
- Taniguchi R [47]
- Berger C [46]
- Schaffer M [45]
- Dumoux M [44]
- Fernandez JJ [44]
- Subramaniam S [44]
- Bork P [43]
- Wan W [43]
- Toro-nahuelpan M [41]
- Zhou ZH [41]
- Nicastro D [39]
- Guichard P [39]
- Ludtke SJ [39]
- Chen M [39]
- Kudryashev M [39]
- Fronik S [39]
- Zimmermann-kogadeeva M [38]
- Beeby M [38]
- Sun F [38]
- Ni T [36]
- Weiss GL [36]
- Mosalaganti S [36]
- Hagen WJH [35]
- Zhu Y [34]
- Huiskonen JT [34]
- Watson H [34]
- Rettberg LA [34]
- Chakraborty S [34]
- Li S [34]
- Des Georges A [34]
- Echeverria I [33]
- Mattei S [32]
- Pigino G [32]
- Skinner WM [32]
- Chen Z [32]
- Hagen WJ [31]
- Faller WJ [31]
- Yin G [31]
- Ke Z [31]
- Ricana CL [31]
- Mechulam Y [31]
- Briegel A [31]
- Tai L [30]
- Vale RD [30]
- Andino-frydman E [30]
- Hendrixson DR [28]
- Raunser S [28]
- Wang Z [28]
- Martinez-sanchez A [28]
- Lishko PV [28]
- Zhou Y [27]
- Bartesaghi A [27]
- Frydman J [27]
- Morado DR [27]
- Borgnia MJ [26]
- Zhu Y [26]
- Gautel M [26]
- Prazak V [25]
- Liu Y [25]
Journal
- NAT COMMUN [399]
- PNAS [246]
- BIORXIV [227]
- SCIENCE [226]
- NATURE [221]
- CELL [164]
- TO BE PUBLISHED [158]
- ELIFE [138]
- SCI ADV [122]
- NAT METHODS [117]
- NAT STRUCT MOL BIOL [112]
- EMBO J [84]
- NAT MICROBIOL [69]
- J CELL BIOL [67]
- MOL CELL [67]
- MOL BIOL CELL [60]
- PLOS PATHOG [55]
- J STRUCT BIOL [49]
- J VIROL [48]
- STRUCTURE [45]
- MBIO [35]
- CURR BIOL [32]
- EMBO REP [24]
- MOL MICROBIOL [22]
- CELL DISCOV [21]
- COMMUN BIOL [21]
- CELL RES [20]
- LIFE SCI ALLIANCE [19]
- NAT CELL BIOL [17]
- PLOS BIOL [16]
- J CELL SCI [15]
- NAT PLANTS [15]
- CELL REP [14]
- J BACTERIOL [14]
- CELL HOST MICROBE [13]
- DEV CELL [13]
- SCI REP [13]
- J MOL BIOL [12]
- NUCLEIC ACIDS RES [10]
- FRONT CELL INFECT MICROBIOL [9]
- OPEN BIOL [9]
- CYTOSKELETON [8]
- PLOS ONE [8]
- J BIOL CHEM [6]
- PLOS GENET [6]
- SIGNAL TRANSDUCT TARGET THER [6]
- FRONT MICROBIOL [5]
- ISCIENCE [5]
- PLOS NEGL TROP DIS [5]
- INT J MOL SCI [4]
- NAT PROTOC [4]
- BIOCHEMISTRY [3]
- FASEB J [3]
- FEBS LETT [3]
- MSPHERE [3]
- PROTEIN CELL [3]
- VIRUSES [3]
- BIOMACROMOLECULES [2]
- FEBS J [2]
- GENES CELLS [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J.BIOCHEM. [2]
- NAT NEUROSCI [2]
- ACTA CRYSTALLOGR D STRUCT BIOL [1]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
- ADV SCI [1]
- BIOCHEM J [1]
- BIOL IMAGING [1]
- BIOMOLECULES [1]
- CELLS [1]
- FEBS OPEN BIO [1]
- FRONT CELL DEV BIOL [1]
- FRONT MOL BIOSCI [1]
- INFECT.IMMUN. [1]
- J MUSCLE RES CELL MOTIL [1]
- J VIS EXP [1]
- J.MUSCLE RES.CELL.MOTIL. [1]
- KIDNEY INT [1]
- NANOTECHNOL RUSSIA [1]
- PLANT PHYSIOL [1]
- PNAS NEXUS [1]
- PROTEIN SCI [1]
- SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]
Software
- RELION [802]
- IMOD [410]
- DYNAMO [306]
- WARP [275]
- PEET [231]
- PYTOM [126]
- CTFFIND [120]
- MATLAB [106]
- EMAN2 [99]
- AV3 [81]
- NOVACTF [71]
- EMCLARITY [62]
- NOVASTA [61]
- TOM TOOLBOX [59]
- CHIMERA [58]
- STOPGAP [53]
- CRYOLO [49]
- CTFPHASEFLIP [49]
- TOM [49]
- IMOD, PEET [34]
- GCTF [32]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- SUBTOM [20]
- TOMO3D [19]
- UCSF CHIMERA [19]
- IMOD, TOMO3D, PEET [18]
- I3 [17]
- EMAN [16]
- ETOMO [16]
- PROTOMO [16]
- IMOD, DYNAMO [15]
- IMOD, TOMO3D [15]
- XMIPP [14]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- SPIDER [12]
- CISTEM [11]
- IMOD, PROTOMO [11]
- AMIRA [10]
- IMOD, BSOFT [10]
- AMIRAFPM [9]
- BSOFT [9]
- TOM, AV3 [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- TOMOCTF [9]
- EMIRA [8]
- UCSF CHIMERAX [8]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- AV3, TOM, PYTOM [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PRIISM/IVE [6]
- M [6]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
- XMIPP, ML, TOMO [6]
- IMOD, TOM, PACKAGE, MATLAB [5]
- IMOD AND BSOFT [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET, BSOFT [4]
- IMOD/PEET [4]
- IPET, AND, FETR [4]
- JSUBTOMO [4]
- PROJALIGN [4]
- SUPER-SAMPLING SART [4]
- 3DMOD [3]
- IMOD, XMIPP, TOMO3D [3]
- TOM, AV3, PYTOM [3]
- TOM/AV3, MATLAB [3]
- TOMOALIGN [3]
- CHIMERA, SEGGER [2]
- CRYODRGN [2]
- EM [2]
- ETOMO, DYNAMO [2]
- ETOMO, TOM, PYTOM [2]
- IMOD, BSOFT, JSUBTOMO [2]
- IMOD, EMAN2 [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, SPIDER, BSOFT [2]
- IMOD, TOMO3D, RELION [2]
- IMOD, TOMOHUNTER [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- MRC, IMOD, IVE [2]
- PROTOMO AND I3 [2]
- PROTOMO, IMOD [2]
- APPION [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- COMET [1]
- COOT [1]
- CRYOSPARC [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN, HIMPOSE, SPIDER [1]
- EMAN1 [1]
Microscope
- FEI TITAN KRIOS [1627]
- TFS KRIOS [495]
- FEI POLARA 300 [293]
- FEI TALOS ARCTICA [84]
- FEI TECNAI F20 [71]
- FEI TECNAI F30 [50]
- FEI TECNAI 20 [46]
- JEOL 2200FS [45]
- JEOL 3100FFC [44]
- FEI TITAN [39]
- TFS GLACIOS [22]
- OTHER [20]
- FEI TECNAI 12 [17]
- JEOL 3200FSC [16]
- JEOL 2100 [13]
- FEI/PHILIPS CM300FEG/T [10]
- FEI TECNAI ARCTICA [8]
- JEOL 3100FEF [7]
- TFS TALOS [7]
- JEOL 2010F [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/ST [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2100F [3]
Electron Source
- FIELD EMISSION GUN [2876]
- LAB6 [49]
- OTHER [6]
- TUNGSTEN HAIRPIN [2]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [900]
- GATAN K3 BIOQUANTUM 6K X 4K [441]
- GATAN K3 6K X 4K [383]
- GATAN K2 QUANTUM 4K X 4K [281]
- FEI FALCON IV 4K X 4K [244]
- TFS FALCON 4I 4K X 4K [88]
- GATAN ULTRASCAN 4000 4K X 4K [86]
- TVIPS TEMCAM-F416 4K X 4K [70]
- GATAN ULTRASCAN 1000 2K X 2K [65]
- FEI FALCON II 4K X 4K [62]
- GENERIC CCD [47]
- GATAN MULTISCAN [33]
- TVIPS TEMCAM-F415 4K X 4K [31]
- FEI FALCON III 4K X 4K [27]
- GATAN K2 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [18]
- GENERIC GATAN [18]
- DIRECT ELECTRON DE-20 5K X 3K [15]
- TVIPS TEMCAM-F216 2K X 2K [10]
- FEI FALCON I 4K X 4K [9]
- OTHER [7]
- FEI EAGLE 4K X 4K [6]
- GENERIC GATAN 2K X 2K [6]
- GENERIC TVIPS 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- GATAN K2 BASE 4K X 4K [4]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC GATAN 4K X 4K [1]
External links
- UniProt [372]
- EMPIAR [324]
- PDBe-Kb [317]
- PDB [305]
- AlphaFold DB [230]
- InterPro [184]
- Pfam [179]
- Gene Ontology [173]
- ChEBI [53]
- ChEMBL [51]
- DrugBank [49]
- Complex Portal [29]
- SCOP2 [23]