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subtomogramAveraging
Filter By
Current Database
- EMDB [3172]
Current status
- REL [3172]
Sample type
- Complex [1137]
- Cellular component [773]
- Protein [634]
- Cell [624]
- Virus [509]
- Sample [451]
- Ligand [63]
- RNA [50]
- Tissue [26]
- Other [22]
- DNA [2]
Organism
- Homo sapiens [511]
- Mus musculus [336]
- Chlamydomonas reinhardtii [247]
- Human immunodeficiency virus 1 [134]
- Escherichia coli [109]
- Saccharomyces cerevisiae [97]
- Rattus norvegicus [88]
- Tetrahymena thermophila [71]
- Mycoplasma pneumoniae [68]
- Severe acute respiratory syndrome coronavirus [64]
- Dictyostelium discoideum [49]
- Oryctolagus cuniculus [38]
- Schizosaccharomyces pombe [35]
- Borrelia burgdorferi [32]
- Caenorhabditis elegans [30]
- Sus scrofa [30]
- Bos taurus [28]
- Drosophila melanogaster [27]
- Chikungunya virus [26]
- Rous sarcoma virus [25]
- Campylobacter jejuni [25]
- Plasmodium falciparum [24]
- Xenopus laevis [23]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [21]
- Myxococcus xanthus [21]
- Vibrio cholerae [21]
- Human herpesvirus 1 [20]
- Campylobacter jejuni [20]
- Escherichia coli [20]
- Human immunodeficiency virus 1 [20]
- Sus scrofa [17]
- (no species) [13]
- Human herpesvirus 3 [13]
- Measles morbillivirus [13]
- Primate t-lymphotropic virus 1 [13]
- Legionella pneumophila [13]
- Danio rerio [13]
- Vaccinia virus [12]
- Influenza a virus [12]
- Simian immunodeficiency virus [12]
- Trypanosoma brucei [12]
- Synthetic construct [11]
- Toxoplasma gondii [11]
- Saccharomyces cerevisiae [11]
- Mammalian orthoreovirus [10]
- Rift valley fever phlebovirus [10]
- Zaire ebolavirus [10]
- Equine infectious anemia virus [9]
- Streptococcus pneumoniae [9]
- Mycobacterium phage bxb1 [9]
- Toxoplasma gondii [9]
- Chaetomium thermophilum [9]
- Salmonella enterica [9]
- Canis lupus [9]
- Unidentified influenza virus [8]
- Deltainfluenzavirus influenzae [8]
- Thermus thermophilus [8]
- Human herpesvirus 8 [8]
- Aggregatibacter actinomycetemcomitans [8]
- (no species) [7]
- Enterobacteria phage t4 [7]
- Shigella flexneri [7]
- Synechococcus elongatus [7]
- Murine leukemia virus [7]
- Caulobacter vibrioides [7]
- Chaetomium thermophilum [7]
- Influenza a virus [7]
- Pseudomonas aeruginosa [7]
- Rotavirus a [7]
- Varicellovirus suidalpha1 [7]
- Cryptosporidium parvum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Avian infectious bursal disease virus [6]
- Human respirovirus 3 [6]
- Flock house virus [6]
- Enterococcus faecium [6]
- Agricanvirus ray [6]
- Helicobacter pylori [6]
- Neospora caninum [6]
- Pseudoalteromonas luteoviolacea [6]
- Dictyostelium discoideum [6]
- Tetrahymena thermophila [6]
- Paramecium tetraurelia [6]
- Torpedo marmorata [6]
- Gallus gallus [6]
- Salmonella phage p22 [5]
- Human respiratory syncytial virus [5]
- Synechocystis sp. pcc 6803 [5]
- Lassa mammarenavirus [5]
- Enterovirus c [5]
- Orthoebolavirus zairense [5]
- Aureispira sp. ccb-qb1 [5]
- Pseudomonas phage 201phi2-1 [5]
- 2056194 [5]
- Eastern chimpanzee simian foamy virus [5]
- Porcine epidemic diarrhea virus [5]
- Mycoplasma genitalium [5]
- Porcine epidemic diarrhea virus [5]
- Teranympha mirabilis [5]
EM Method
- Subtomogram averaging [3172]
Resolution
- < 2Å [4]
- ≥ 2Å and < 3Å [16]
- ≥ 3Å and < 4Å [70]
- ≥ 4Å and < 5Å [99]
- ≥ 5Å and < 6Å [59]
- ≥ 6Å and < 8Å [251]
- ≥ 8Å and < 12Å [486]
- ≥ 12Å and < 16Å [262]
- ≥ 16Å and < 20Å [218]
- ≥ 20Å and < 30Å [609]
- ≥ 30Å [1000]
Model molecular weight
- 0-50 kDa [13]
- 50-100 kDa [16]
- 100-250 kDa [74]
- 250-500 kDa [57]
- 500-1000 kDa [52]
- 1-2 MDa [37]
- 2-5 MDa [49]
- 5-10 MDa [8]
- > 10 MDa [12]
Release Date
- 2026 [239]
- 2025 [452]
- 2024 [494]
- 2023 [371]
- 2022 [351]
- 2021 [217]
- 2020 [178]
- 2019 [144]
- 2018 [128]
- 2017 [107]
- 2016 [123]
- 2015 [74]
- 2014 [73]
- 2013 [82]
- 2012 [69]
- 2011 [24]
- 2010 [18]
- 2009 [11]
- 2008 [4]
- 2007 [5]
- 2006 [8]
Author by name
- Beck M [237]
- Liu J [157]
- Mahamid J [151]
- Baumeister W [143]
- Turonova B [140]
- Plitzko JM [132]
- Zhang P [131]
- Briggs JAG [128]
- Agard DA [118]
- Kreysing JP [109]
- Zhu Y [109]
- Jensen GJ [105]
- Chiu W [99]
- Li S [98]
- Engel BD [97]
- Hutchings J [85]
- Grange M [84]
- Beck F [83]
- Guo Q [83]
- Schmid MF [83]
- Villa E [83]
- Kikkawa M [82]
- Chang YW [81]
- Forster F [78]
- Xue L [78]
- Krausslich HG [77]
- Hummer G [76]
- Welsch S [76]
- Pfeffer S [75]
- Oda T [71]
- Schaffer M [71]
- Obarska-kosinska A [70]
- Schur FKM [69]
- Yanagisawa H [69]
- Taniguchi R [68]
- Obr M [66]
- Bui KH [65]
- Khusainov I [65]
- Pilhofer M [65]
- Wan W [65]
- Beeby M [63]
- Kosinski J [63]
- Xu J [63]
- Bartesaghi A [62]
- Chen L [62]
- Sun F [61]
- Cramer P [58]
- Pigino G [58]
- Chen M [57]
- Nicastro D [57]
- Tegunov D [57]
- Cruz-leon S [55]
- Rappsilber J [55]
- Kotecha A [54]
- Li Z [53]
- Briggs JA [52]
- Hoffmann PC [52]
- Zhao X [52]
- Zimmerli CE [52]
- Fedry J [51]
- Grunewald K [51]
- Martinez-sanchez A [51]
- Ni T [51]
- Yu Z [51]
- Zhang X [51]
- Kudryashev M [50]
- Subramaniam S [50]
- Dick RA [49]
- Lenz S [49]
- Liu Y [49]
- Xing H [49]
- Zhou ZH [49]
- Chang Y-W [48]
- Wang H [48]
- Berger C [46]
- Shi Y [46]
- Wang Z [46]
- Fernandez JJ [45]
- Vale RD [45]
- Chen Y [44]
- Dumoux M [44]
- Mosalaganti S [44]
- Bork P [43]
- Fronik S [43]
- Naismith JH [43]
- Suslov S [43]
- Hendrixson DR [42]
- Wang J [42]
- Chakraborty S [41]
- Howes SC [41]
- Klena N [41]
- Toro-nahuelpan M [41]
- Yin GL [41]
- Alvarez Viar G [40]
- Guichard P [40]
- Klumpe S [40]
- Ludtke SJ [40]
- Ishikawa T [39]
- Zila V [39]
- Chen Z [38]
Author by ORCID
- Beck M [148]
- Mahamid J [141]
- Kreysing JP [109]
- Briggs JAG [97]
- Engel BD [91]
- Turonova B [90]
- Agard DA [89]
- Chiu W [87]
- Zhang P [86]
- Plitzko JM [84]
- Grange M [82]
- Chang YW [81]
- Liu J [78]
- Xue L [78]
- Forster F [77]
- Hummer G [76]
- Kikkawa M [74]
- Guo Q [73]
- Oda T [71]
- Schmid MF [66]
- Obarska-kosinska A [65]
- Khusainov I [64]
- Kosinski J [63]
- Pfeffer S [61]
- Pilhofer M [60]
- Yanagisawa H [58]
- Schur FKM [58]
- Cramer P [57]
- Baumeister W [56]
- Welsch S [56]
- Rappsilber J [53]
- Li S [53]
- Bui KH [53]
- Hoffmann PC [52]
- Briggs JA [52]
- Zimmerli CE [52]
- Pigino G [51]
- Grunewald K [49]
- Xing H [49]
- Krausslich HG [49]
- Lenz S [49]
- Chen M [49]
- Taniguchi R [47]
- Berger C [46]
- Kotecha A [46]
- Schaffer M [45]
- Dumoux M [44]
- Fernandez JJ [44]
- Subramaniam S [44]
- Bork P [43]
- Wan W [43]
- Fronik S [43]
- Nicastro D [42]
- Toro-nahuelpan M [41]
- Zhou ZH [41]
- Zhu Y [40]
- Kudryashev M [40]
- Guichard P [39]
- Ludtke SJ [39]
- Zimmermann-kogadeeva M [38]
- Beeby M [38]
- Ni T [38]
- Sun F [38]
- Weiss GL [38]
- Shiozaki M [38]
- Mosalaganti S [36]
- Hagen WJH [35]
- Huiskonen JT [35]
- Mattei S [35]
- Lishko PV [35]
- Watson H [34]
- Rettberg LA [34]
- Chakraborty S [34]
- Wilfling F [34]
- Li S [34]
- Des Georges A [34]
- Echeverria I [33]
- Hendrixson DR [32]
- Skinner WM [32]
- Zhu Y [32]
- Chen Z [32]
- Villa E [32]
- Duquette M [32]
- Silva J [31]
- Hagen WJ [31]
- Faller WJ [31]
- Yin G [31]
- Ke Z [31]
- Soni N [31]
- Ricana CL [31]
- Mechulam Y [31]
- Briegel A [31]
- Tai L [30]
- Vale RD [30]
- Morado DR [30]
- Andino-frydman E [30]
- Raunser S [28]
- Daum B [28]
- Wang Z [28]
- Martinez-sanchez A [28]
Journal
- NAT COMMUN [450]
- BIORXIV [282]
- PNAS [252]
- SCIENCE [243]
- NATURE [228]
- TO BE PUBLISHED [194]
- CELL [166]
- ELIFE [139]
- SCI ADV [134]
- NAT METHODS [124]
- NAT STRUCT MOL BIOL [115]
- EMBO J [89]
- NAT MICROBIOL [81]
- MOL CELL [74]
- J CELL BIOL [70]
- MOL BIOL CELL [60]
- PLOS PATHOG [55]
- J STRUCT BIOL [49]
- J VIROL [48]
- STRUCTURE [46]
- MBIO [38]
- CURR BIOL [32]
- EMBO REP [28]
- COMMUN BIOL [25]
- MOL MICROBIOL [22]
- CELL DISCOV [21]
- CELL RES [20]
- LIFE SCI ALLIANCE [19]
- NAT CELL BIOL [17]
- PLOS BIOL [16]
- J CELL SCI [15]
- NAT PLANTS [15]
- CELL REP [14]
- J BACTERIOL [14]
- CELL HOST MICROBE [13]
- DEV CELL [13]
- SCI REP [13]
- J MOL BIOL [12]
- NUCLEIC ACIDS RES [10]
- FRONT CELL INFECT MICROBIOL [9]
- OPEN BIOL [9]
- CYTOSKELETON [8]
- PLOS ONE [8]
- IUCRJ [7]
- FEBS LETT [6]
- J BIOL CHEM [6]
- PLOS GENET [6]
- SIGNAL TRANSDUCT TARGET THER [6]
- FRONT MICROBIOL [5]
- ISCIENCE [5]
- PLOS NEGL TROP DIS [5]
- INT J MOL SCI [4]
- J VIS EXP [4]
- NAT PROTOC [4]
- BIOCHEMISTRY [3]
- CELL.MOL.LIFE SCI. [3]
- FASEB J [3]
- MSPHERE [3]
- PROTEIN CELL [3]
- VIRUSES [3]
- ACS CHEM BIOL [2]
- BIOMACROMOLECULES [2]
- FEBS J [2]
- GENES CELLS [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J.BIOCHEM. [2]
- NAT NEUROSCI [2]
- VITA [2]
- ACTA CRYSTALLOGR D STRUCT BIOL [1]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
- ADV SCI [1]
- AIMS BIOPHYS [1]
- AIMS BIOPHYSICS [1]
- BIOCHEM J [1]
- BIOL IMAGING [1]
- BIOMOLECULES [1]
- BIORXIV.ORG [1]
- CELLS [1]
- FEBS OPEN BIO [1]
- FRONT CELL DEV BIOL [1]
- FRONT MOL BIOSCI [1]
- INFECT.IMMUN. [1]
- J MUSCLE RES CELL MOTIL [1]
- J.MUSCLE RES.CELL.MOTIL. [1]
- KIDNEY INT [1]
- NANOTECHNOL RUSSIA [1]
- PLANT PHYSIOL [1]
- PNAS NEXUS [1]
- PROTEIN SCI [1]
- SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]
Software
- RELION [970]
- IMOD [420]
- WARP [391]
- DYNAMO [325]
- PEET [236]
- PYTOM [138]
- CTFFIND [126]
- EMAN2 [115]
- MATLAB [106]
- AV3 [82]
- EMCLARITY [76]
- NOVACTF [73]
- NOVASTA [62]
- TOM TOOLBOX [62]
- CHIMERA [58]
- STOPGAP [54]
- CRYOLO [53]
- CTFPHASEFLIP [49]
- TOM [49]
- M [48]
- GCTF [38]
- IMOD, PEET [34]
- I3 [25]
- SUBTOM [24]
- UCSF CHIMERA [23]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- TOMO3D [19]
- IMOD, TOMO3D, PEET [18]
- EMAN [16]
- ETOMO [16]
- PROTOMO [16]
- IMOD, DYNAMO [15]
- IMOD, TOMO3D [15]
- XMIPP [14]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- SPIDER [12]
- CISTEM [11]
- IMOD, PROTOMO [11]
- AMIRA [10]
- IMOD, BSOFT [10]
- AMIRAFPM [9]
- BSOFT [9]
- TOM, AV3 [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- TOMOCTF [9]
- EMIRA [8]
- UCSF CHIMERAX [8]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- ARETOMO [6]
- AV3, TOM, PYTOM [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PRIISM/IVE [6]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
- XMIPP, ML, TOMO [6]
- IMOD, TOM, PACKAGE, MATLAB [5]
- IMOD AND BSOFT [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET, BSOFT [4]
- IMOD/PEET [4]
- IPET, AND, FETR [4]
- JSUBTOMO [4]
- PROJALIGN [4]
- SUPER-SAMPLING SART [4]
- 3DMOD [3]
- CRYOSPARC [3]
- IMOD, XMIPP, TOMO3D [3]
- TOM, AV3, PYTOM [3]
- TOM/AV3, MATLAB [3]
- TOMOALIGN [3]
- CHIMERA, SEGGER [2]
- CRYODRGN [2]
- EM [2]
- ETOMO, DYNAMO [2]
- ETOMO, TOM, PYTOM [2]
- IMOD, BSOFT, JSUBTOMO [2]
- IMOD, EMAN2 [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, SPIDER, BSOFT [2]
- IMOD, TOMO3D, RELION [2]
- IMOD, TOMOHUNTER [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- MRC, IMOD, IVE [2]
- PROTOMO AND I3 [2]
- PROTOMO, IMOD [2]
- APPION [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- COMET [1]
- COOT [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN, HIMPOSE, SPIDER [1]
Microscope
- FEI TITAN KRIOS [1635]
- TFS KRIOS [702]
- FEI POLARA 300 [293]
- FEI TALOS ARCTICA [92]
- FEI TECNAI F20 [71]
- FEI TECNAI F30 [50]
- FEI TECNAI 20 [46]
- JEOL 2200FS [45]
- JEOL 3100FFC [44]
- FEI TITAN [39]
- TFS GLACIOS [31]
- OTHER [20]
- FEI TECNAI 12 [17]
- JEOL 3200FSC [16]
- JEOL 2100 [13]
- FEI TECNAI ARCTICA [10]
- FEI/PHILIPS CM300FEG/T [10]
- JEOL 3100FEF [7]
- TFS TALOS [7]
- JEOL 2010F [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/ST [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2100F [3]
- TFS TITAN THEMIS [3]
- JEOL CRYO ARM 300 [2]
Electron Source
- FIELD EMISSION GUN [3111]
- LAB6 [49]
- OTHER [10]
- TUNGSTEN HAIRPIN [2]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [912]
- GATAN K3 BIOQUANTUM 6K X 4K [492]
- GATAN K3 6K X 4K [429]
- FEI FALCON IV 4K X 4K [302]
- GATAN K2 QUANTUM 4K X 4K [291]
- TFS FALCON 4I 4K X 4K [145]
- GATAN ULTRASCAN 4000 4K X 4K [86]
- TVIPS TEMCAM-F416 4K X 4K [70]
- GATAN ULTRASCAN 1000 2K X 2K [65]
- FEI FALCON II 4K X 4K [62]
- GENERIC CCD [47]
- GATAN MULTISCAN [33]
- TVIPS TEMCAM-F415 4K X 4K [31]
- FEI FALCON III 4K X 4K [27]
- GATAN K2 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [22]
- GENERIC GATAN [18]
- DIRECT ELECTRON DE-20 5K X 3K [15]
- TVIPS TEMCAM-F216 2K X 2K [10]
- FEI FALCON I 4K X 4K [9]
- OTHER [7]
- FEI EAGLE 4K X 4K [6]
- GATAN K2 BASE 4K X 4K [6]
- GENERIC GATAN 2K X 2K [6]
- GENERIC TVIPS 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC GATAN 4K X 4K [1]
External links
- PDB [3160]
- UniProt [390]
- EMPIAR [379]
- PDBe-Kb [335]
- AlphaFold DB [299]
- InterPro [195]
- Gene Ontology [184]
- Pfam [166]
- ChEBI [58]
- ChEMBL [55]
- DrugBank [54]
- Complex Portal [32]
- SCOP2 [23]
CryoEM
Release date: July 8, 2026
Resolution: 6.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rbu
Q-score: 0.118
Resolution: 6.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rbu
Q-score: 0.118
Vazquez-Sarandeses E, Mikirtumov V, Noel J, Kudryashev M, Daumke O
biorxiv.org (2025) [ DOI: doi:10.1101/2025.06.05.658037 ]
CryoEM
Release date: July 8, 2026
Resolution: 10.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rc1
Q-score: 0.075
Resolution: 10.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rc1
Q-score: 0.075
Vazquez-Sarandeses E, Mikirtumov V, Noel J, Kudryashev M, Daumke O
To Be Published
CryoEM
Release date: July 8, 2026
Resolution: 6.8 Å
EM Method: Subtomogram averaging
Resolution: 6.8 Å
EM Method: Subtomogram averaging
Gemin O, Armijo V, Lecomte L, Hons M, Deckers T, Bissardon C, Rossi C, Lauzier K, Janocha R, Felisaz F, Sinoir J, Linares R, Babenko A, Kovalev K, Prokhorova I, Khusainov I, Schreiner C, Kolesnikova O, Salo VT, Schneider S, Bowler MW, Wolff G, Galej WP, Mahamid J, Muller CW, Carugo KD, Eustermann S, Mattei S, Cipriani F, Papp G
Nat Methods (2026) [ DOI: doi:10.1038/s41592-026-03127-5 Pubmed: 42337080 ]
CryoEM
Release date: July 8, 2026
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Resolution: 30.0 Å
EM Method: Subtomogram averaging
Lin XF, Hu H
To Be Published
CryoEM
Release date: July 8, 2026
Resolution: 16.0 Å
EM Method: Subtomogram averaging
Resolution: 16.0 Å
EM Method: Subtomogram averaging
Wang D, Jia X, Dharan R, Ren J, Zheng Y, Li X, Huang M, Xu K, Zhang Q, Sho T, Liu S, Yang F, Zhang QC, Sorkin R, Liu N, Wang HW, Yu L
Vita (2026) [ DOI: doi:10.15302/vita.2026.05.0039 ]
CryoEM
Release date: July 8, 2026
Resolution: 22.0 Å
EM Method: Subtomogram averaging
Resolution: 22.0 Å
EM Method: Subtomogram averaging
Wang D, Jia X, Dharan R, Ren J, Zheng Y, Li X, Huang M, Xu K, Zhang Q, Sho T, Liu S, Yang F, Zhang QC, Sorkin R, Liu N, Wang HW, Yu L
Vita (2026) [ DOI: doi:10.15302/vita.2026.05.0039 ]
CryoEM
Release date: July 8, 2026
Resolution: 8.0 Å
EM Method: Subtomogram averaging
Resolution: 8.0 Å
EM Method: Subtomogram averaging
Yang JH
To Be Published
CryoEM
Release date: July 8, 2026
Resolution: 6.9 Å
EM Method: Subtomogram averaging
Resolution: 6.9 Å
EM Method: Subtomogram averaging
Yang JH
To Be Published
CryoEM
Release date: July 8, 2026
Resolution: 6.1 Å
EM Method: Subtomogram averaging
Resolution: 6.1 Å
EM Method: Subtomogram averaging
Yang JH
To Be Published
CryoEM
Release date: July 8, 2026
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Yang JH
To Be Published
Filter By
Current Database
- EMDB [3172]
Current status
- REL [3172]
Sample type
- Complex [1137]
- Cellular component [773]
- Protein [634]
- Cell [624]
- Virus [509]
- Sample [451]
- Ligand [63]
- RNA [50]
- Tissue [26]
- Other [22]
- DNA [2]
Organism
- Homo sapiens [511]
- Mus musculus [336]
- Chlamydomonas reinhardtii [247]
- Human immunodeficiency virus 1 [134]
- Escherichia coli [109]
- Saccharomyces cerevisiae [97]
- Rattus norvegicus [88]
- Tetrahymena thermophila [71]
- Mycoplasma pneumoniae [68]
- Severe acute respiratory syndrome coronavirus [64]
- Dictyostelium discoideum [49]
- Oryctolagus cuniculus [38]
- Schizosaccharomyces pombe [35]
- Borrelia burgdorferi [32]
- Caenorhabditis elegans [30]
- Sus scrofa [30]
- Bos taurus [28]
- Drosophila melanogaster [27]
- Chikungunya virus [26]
- Rous sarcoma virus [25]
- Campylobacter jejuni [25]
- Plasmodium falciparum [24]
- Xenopus laevis [23]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [21]
- Myxococcus xanthus [21]
- Vibrio cholerae [21]
- Human herpesvirus 1 [20]
- Campylobacter jejuni [20]
- Escherichia coli [20]
- Human immunodeficiency virus 1 [20]
- Sus scrofa [17]
- (no species) [13]
- Human herpesvirus 3 [13]
- Measles morbillivirus [13]
- Primate t-lymphotropic virus 1 [13]
- Legionella pneumophila [13]
- Danio rerio [13]
- Vaccinia virus [12]
- Influenza a virus [12]
- Simian immunodeficiency virus [12]
- Trypanosoma brucei [12]
- Synthetic construct [11]
- Toxoplasma gondii [11]
- Saccharomyces cerevisiae [11]
- Mammalian orthoreovirus [10]
- Rift valley fever phlebovirus [10]
- Zaire ebolavirus [10]
- Equine infectious anemia virus [9]
- Streptococcus pneumoniae [9]
- Mycobacterium phage bxb1 [9]
- Toxoplasma gondii [9]
- Chaetomium thermophilum [9]
- Salmonella enterica [9]
- Canis lupus [9]
- Unidentified influenza virus [8]
- Deltainfluenzavirus influenzae [8]
- Thermus thermophilus [8]
- Human herpesvirus 8 [8]
- Aggregatibacter actinomycetemcomitans [8]
- (no species) [7]
- Enterobacteria phage t4 [7]
- Shigella flexneri [7]
- Synechococcus elongatus [7]
- Murine leukemia virus [7]
- Caulobacter vibrioides [7]
- Chaetomium thermophilum [7]
- Influenza a virus [7]
- Pseudomonas aeruginosa [7]
- Rotavirus a [7]
- Varicellovirus suidalpha1 [7]
- Cryptosporidium parvum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Avian infectious bursal disease virus [6]
- Human respirovirus 3 [6]
- Flock house virus [6]
- Enterococcus faecium [6]
- Agricanvirus ray [6]
- Helicobacter pylori [6]
- Neospora caninum [6]
- Pseudoalteromonas luteoviolacea [6]
- Dictyostelium discoideum [6]
- Tetrahymena thermophila [6]
- Paramecium tetraurelia [6]
- Torpedo marmorata [6]
- Gallus gallus [6]
- Salmonella phage p22 [5]
- Human respiratory syncytial virus [5]
- Synechocystis sp. pcc 6803 [5]
- Lassa mammarenavirus [5]
- Enterovirus c [5]
- Orthoebolavirus zairense [5]
- Aureispira sp. ccb-qb1 [5]
- Pseudomonas phage 201phi2-1 [5]
- 2056194 [5]
- Eastern chimpanzee simian foamy virus [5]
- Porcine epidemic diarrhea virus [5]
- Mycoplasma genitalium [5]
- Porcine epidemic diarrhea virus [5]
- Teranympha mirabilis [5]
EM Method
- Subtomogram averaging [3172]
Resolution
- < 2Å [4]
- ≥ 2Å and < 3Å [16]
- ≥ 3Å and < 4Å [70]
- ≥ 4Å and < 5Å [99]
- ≥ 5Å and < 6Å [59]
- ≥ 6Å and < 8Å [251]
- ≥ 8Å and < 12Å [486]
- ≥ 12Å and < 16Å [262]
- ≥ 16Å and < 20Å [218]
- ≥ 20Å and < 30Å [609]
- ≥ 30Å [1000]
Model molecular weight
- 0-50 kDa [13]
- 50-100 kDa [16]
- 100-250 kDa [74]
- 250-500 kDa [57]
- 500-1000 kDa [52]
- 1-2 MDa [37]
- 2-5 MDa [49]
- 5-10 MDa [8]
- > 10 MDa [12]
Release Date
- 2026 [239]
- 2025 [452]
- 2024 [494]
- 2023 [371]
- 2022 [351]
- 2021 [217]
- 2020 [178]
- 2019 [144]
- 2018 [128]
- 2017 [107]
- 2016 [123]
- 2015 [74]
- 2014 [73]
- 2013 [82]
- 2012 [69]
- 2011 [24]
- 2010 [18]
- 2009 [11]
- 2008 [4]
- 2007 [5]
- 2006 [8]
Author by name
- Beck M [237]
- Liu J [157]
- Mahamid J [151]
- Baumeister W [143]
- Turonova B [140]
- Plitzko JM [132]
- Zhang P [131]
- Briggs JAG [128]
- Agard DA [118]
- Kreysing JP [109]
- Zhu Y [109]
- Jensen GJ [105]
- Chiu W [99]
- Li S [98]
- Engel BD [97]
- Hutchings J [85]
- Grange M [84]
- Beck F [83]
- Guo Q [83]
- Schmid MF [83]
- Villa E [83]
- Kikkawa M [82]
- Chang YW [81]
- Forster F [78]
- Xue L [78]
- Krausslich HG [77]
- Hummer G [76]
- Welsch S [76]
- Pfeffer S [75]
- Oda T [71]
- Schaffer M [71]
- Obarska-kosinska A [70]
- Schur FKM [69]
- Yanagisawa H [69]
- Taniguchi R [68]
- Obr M [66]
- Bui KH [65]
- Khusainov I [65]
- Pilhofer M [65]
- Wan W [65]
- Beeby M [63]
- Kosinski J [63]
- Xu J [63]
- Bartesaghi A [62]
- Chen L [62]
- Sun F [61]
- Cramer P [58]
- Pigino G [58]
- Chen M [57]
- Nicastro D [57]
- Tegunov D [57]
- Cruz-leon S [55]
- Rappsilber J [55]
- Kotecha A [54]
- Li Z [53]
- Briggs JA [52]
- Hoffmann PC [52]
- Zhao X [52]
- Zimmerli CE [52]
- Fedry J [51]
- Grunewald K [51]
- Martinez-sanchez A [51]
- Ni T [51]
- Yu Z [51]
- Zhang X [51]
- Kudryashev M [50]
- Subramaniam S [50]
- Dick RA [49]
- Lenz S [49]
- Liu Y [49]
- Xing H [49]
- Zhou ZH [49]
- Chang Y-W [48]
- Wang H [48]
- Berger C [46]
- Shi Y [46]
- Wang Z [46]
- Fernandez JJ [45]
- Vale RD [45]
- Chen Y [44]
- Dumoux M [44]
- Mosalaganti S [44]
- Bork P [43]
- Fronik S [43]
- Naismith JH [43]
- Suslov S [43]
- Hendrixson DR [42]
- Wang J [42]
- Chakraborty S [41]
- Howes SC [41]
- Klena N [41]
- Toro-nahuelpan M [41]
- Yin GL [41]
- Alvarez Viar G [40]
- Guichard P [40]
- Klumpe S [40]
- Ludtke SJ [40]
- Ishikawa T [39]
- Zila V [39]
- Chen Z [38]
Author by ORCID
- Beck M [148]
- Mahamid J [141]
- Kreysing JP [109]
- Briggs JAG [97]
- Engel BD [91]
- Turonova B [90]
- Agard DA [89]
- Chiu W [87]
- Zhang P [86]
- Plitzko JM [84]
- Grange M [82]
- Chang YW [81]
- Liu J [78]
- Xue L [78]
- Forster F [77]
- Hummer G [76]
- Kikkawa M [74]
- Guo Q [73]
- Oda T [71]
- Schmid MF [66]
- Obarska-kosinska A [65]
- Khusainov I [64]
- Kosinski J [63]
- Pfeffer S [61]
- Pilhofer M [60]
- Yanagisawa H [58]
- Schur FKM [58]
- Cramer P [57]
- Baumeister W [56]
- Welsch S [56]
- Rappsilber J [53]
- Li S [53]
- Bui KH [53]
- Hoffmann PC [52]
- Briggs JA [52]
- Zimmerli CE [52]
- Pigino G [51]
- Grunewald K [49]
- Xing H [49]
- Krausslich HG [49]
- Lenz S [49]
- Chen M [49]
- Taniguchi R [47]
- Berger C [46]
- Kotecha A [46]
- Schaffer M [45]
- Dumoux M [44]
- Fernandez JJ [44]
- Subramaniam S [44]
- Bork P [43]
- Wan W [43]
- Fronik S [43]
- Nicastro D [42]
- Toro-nahuelpan M [41]
- Zhou ZH [41]
- Zhu Y [40]
- Kudryashev M [40]
- Guichard P [39]
- Ludtke SJ [39]
- Zimmermann-kogadeeva M [38]
- Beeby M [38]
- Ni T [38]
- Sun F [38]
- Weiss GL [38]
- Shiozaki M [38]
- Mosalaganti S [36]
- Hagen WJH [35]
- Huiskonen JT [35]
- Mattei S [35]
- Lishko PV [35]
- Watson H [34]
- Rettberg LA [34]
- Chakraborty S [34]
- Wilfling F [34]
- Li S [34]
- Des Georges A [34]
- Echeverria I [33]
- Hendrixson DR [32]
- Skinner WM [32]
- Zhu Y [32]
- Chen Z [32]
- Villa E [32]
- Duquette M [32]
- Silva J [31]
- Hagen WJ [31]
- Faller WJ [31]
- Yin G [31]
- Ke Z [31]
- Soni N [31]
- Ricana CL [31]
- Mechulam Y [31]
- Briegel A [31]
- Tai L [30]
- Vale RD [30]
- Morado DR [30]
- Andino-frydman E [30]
- Raunser S [28]
- Daum B [28]
- Wang Z [28]
- Martinez-sanchez A [28]
Journal
- NAT COMMUN [450]
- BIORXIV [282]
- PNAS [252]
- SCIENCE [243]
- NATURE [228]
- TO BE PUBLISHED [194]
- CELL [166]
- ELIFE [139]
- SCI ADV [134]
- NAT METHODS [124]
- NAT STRUCT MOL BIOL [115]
- EMBO J [89]
- NAT MICROBIOL [81]
- MOL CELL [74]
- J CELL BIOL [70]
- MOL BIOL CELL [60]
- PLOS PATHOG [55]
- J STRUCT BIOL [49]
- J VIROL [48]
- STRUCTURE [46]
- MBIO [38]
- CURR BIOL [32]
- EMBO REP [28]
- COMMUN BIOL [25]
- MOL MICROBIOL [22]
- CELL DISCOV [21]
- CELL RES [20]
- LIFE SCI ALLIANCE [19]
- NAT CELL BIOL [17]
- PLOS BIOL [16]
- J CELL SCI [15]
- NAT PLANTS [15]
- CELL REP [14]
- J BACTERIOL [14]
- CELL HOST MICROBE [13]
- DEV CELL [13]
- SCI REP [13]
- J MOL BIOL [12]
- NUCLEIC ACIDS RES [10]
- FRONT CELL INFECT MICROBIOL [9]
- OPEN BIOL [9]
- CYTOSKELETON [8]
- PLOS ONE [8]
- IUCRJ [7]
- FEBS LETT [6]
- J BIOL CHEM [6]
- PLOS GENET [6]
- SIGNAL TRANSDUCT TARGET THER [6]
- FRONT MICROBIOL [5]
- ISCIENCE [5]
- PLOS NEGL TROP DIS [5]
- INT J MOL SCI [4]
- J VIS EXP [4]
- NAT PROTOC [4]
- BIOCHEMISTRY [3]
- CELL.MOL.LIFE SCI. [3]
- FASEB J [3]
- MSPHERE [3]
- PROTEIN CELL [3]
- VIRUSES [3]
- ACS CHEM BIOL [2]
- BIOMACROMOLECULES [2]
- FEBS J [2]
- GENES CELLS [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J.BIOCHEM. [2]
- NAT NEUROSCI [2]
- VITA [2]
- ACTA CRYSTALLOGR D STRUCT BIOL [1]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
- ADV SCI [1]
- AIMS BIOPHYS [1]
- AIMS BIOPHYSICS [1]
- BIOCHEM J [1]
- BIOL IMAGING [1]
- BIOMOLECULES [1]
- BIORXIV.ORG [1]
- CELLS [1]
- FEBS OPEN BIO [1]
- FRONT CELL DEV BIOL [1]
- FRONT MOL BIOSCI [1]
- INFECT.IMMUN. [1]
- J MUSCLE RES CELL MOTIL [1]
- J.MUSCLE RES.CELL.MOTIL. [1]
- KIDNEY INT [1]
- NANOTECHNOL RUSSIA [1]
- PLANT PHYSIOL [1]
- PNAS NEXUS [1]
- PROTEIN SCI [1]
- SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]
Software
- RELION [970]
- IMOD [420]
- WARP [391]
- DYNAMO [325]
- PEET [236]
- PYTOM [138]
- CTFFIND [126]
- EMAN2 [115]
- MATLAB [106]
- AV3 [82]
- EMCLARITY [76]
- NOVACTF [73]
- NOVASTA [62]
- TOM TOOLBOX [62]
- CHIMERA [58]
- STOPGAP [54]
- CRYOLO [53]
- CTFPHASEFLIP [49]
- TOM [49]
- M [48]
- GCTF [38]
- IMOD, PEET [34]
- I3 [25]
- SUBTOM [24]
- UCSF CHIMERA [23]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- TOMO3D [19]
- IMOD, TOMO3D, PEET [18]
- EMAN [16]
- ETOMO [16]
- PROTOMO [16]
- IMOD, DYNAMO [15]
- IMOD, TOMO3D [15]
- XMIPP [14]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- SPIDER [12]
- CISTEM [11]
- IMOD, PROTOMO [11]
- AMIRA [10]
- IMOD, BSOFT [10]
- AMIRAFPM [9]
- BSOFT [9]
- TOM, AV3 [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- TOMOCTF [9]
- EMIRA [8]
- UCSF CHIMERAX [8]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- ARETOMO [6]
- AV3, TOM, PYTOM [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PRIISM/IVE [6]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
- XMIPP, ML, TOMO [6]
- IMOD, TOM, PACKAGE, MATLAB [5]
- IMOD AND BSOFT [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET, BSOFT [4]
- IMOD/PEET [4]
- IPET, AND, FETR [4]
- JSUBTOMO [4]
- PROJALIGN [4]
- SUPER-SAMPLING SART [4]
- 3DMOD [3]
- CRYOSPARC [3]
- IMOD, XMIPP, TOMO3D [3]
- TOM, AV3, PYTOM [3]
- TOM/AV3, MATLAB [3]
- TOMOALIGN [3]
- CHIMERA, SEGGER [2]
- CRYODRGN [2]
- EM [2]
- ETOMO, DYNAMO [2]
- ETOMO, TOM, PYTOM [2]
- IMOD, BSOFT, JSUBTOMO [2]
- IMOD, EMAN2 [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, SPIDER, BSOFT [2]
- IMOD, TOMO3D, RELION [2]
- IMOD, TOMOHUNTER [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- MRC, IMOD, IVE [2]
- PROTOMO AND I3 [2]
- PROTOMO, IMOD [2]
- APPION [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- COMET [1]
- COOT [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN, HIMPOSE, SPIDER [1]
Microscope
- FEI TITAN KRIOS [1635]
- TFS KRIOS [702]
- FEI POLARA 300 [293]
- FEI TALOS ARCTICA [92]
- FEI TECNAI F20 [71]
- FEI TECNAI F30 [50]
- FEI TECNAI 20 [46]
- JEOL 2200FS [45]
- JEOL 3100FFC [44]
- FEI TITAN [39]
- TFS GLACIOS [31]
- OTHER [20]
- FEI TECNAI 12 [17]
- JEOL 3200FSC [16]
- JEOL 2100 [13]
- FEI TECNAI ARCTICA [10]
- FEI/PHILIPS CM300FEG/T [10]
- JEOL 3100FEF [7]
- TFS TALOS [7]
- JEOL 2010F [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/ST [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2100F [3]
- TFS TITAN THEMIS [3]
- JEOL CRYO ARM 300 [2]
Electron Source
- FIELD EMISSION GUN [3111]
- LAB6 [49]
- OTHER [10]
- TUNGSTEN HAIRPIN [2]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [912]
- GATAN K3 BIOQUANTUM 6K X 4K [492]
- GATAN K3 6K X 4K [429]
- FEI FALCON IV 4K X 4K [302]
- GATAN K2 QUANTUM 4K X 4K [291]
- TFS FALCON 4I 4K X 4K [145]
- GATAN ULTRASCAN 4000 4K X 4K [86]
- TVIPS TEMCAM-F416 4K X 4K [70]
- GATAN ULTRASCAN 1000 2K X 2K [65]
- FEI FALCON II 4K X 4K [62]
- GENERIC CCD [47]
- GATAN MULTISCAN [33]
- TVIPS TEMCAM-F415 4K X 4K [31]
- FEI FALCON III 4K X 4K [27]
- GATAN K2 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [22]
- GENERIC GATAN [18]
- DIRECT ELECTRON DE-20 5K X 3K [15]
- TVIPS TEMCAM-F216 2K X 2K [10]
- FEI FALCON I 4K X 4K [9]
- OTHER [7]
- FEI EAGLE 4K X 4K [6]
- GATAN K2 BASE 4K X 4K [6]
- GENERIC GATAN 2K X 2K [6]
- GENERIC TVIPS 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC GATAN 4K X 4K [1]
External links
- PDB [3160]
- UniProt [390]
- EMPIAR [379]
- PDBe-Kb [335]
- AlphaFold DB [299]
- InterPro [195]
- Gene Ontology [184]
- Pfam [166]
- ChEBI [58]
- ChEMBL [55]
- DrugBank [54]
- Complex Portal [32]
- SCOP2 [23]