Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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startup_EMDB_model:EMD-1511*

Filter By

Current Database

  • EMDB [61]

Current status

  • REL [44]
  • OBS [17]

Sample type

  • Complex [61]
  • Ligand [54]
  • Protein [54]
  • RNA [54]

Organism

  • Homo sapiens [61]

EM Method

  • Single-particle [61]

Resolution

  • ≥ 2Å and < 3Å [41]
  • ≥ 3Å and < 4Å [19]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 2-5 MDa [35]
  • 5-10 MDa [2]

Release Date

  • 2025 [60]
  • 2024 [1]

Author by name

  • Wei Z [56]
  • Yong X [56]
  • Bailey EJ [38]
  • Chai P [38]
  • Devarkar SC [38]
  • Guo W [38]
  • Lin J [38]
  • Liu J [38]
  • Lomakin IB [38]
  • Wang J [38]
  • Wang S [38]
  • Wu S [38]
  • Xiong Y [38]
  • Zhang K [38]
  • Zhang Y [38]
  • Zheng W [38]
  • Zhu C [38]
  • Yong Z [1]

Author by ORCID

  • Guo W [34]
  • Lin J [34]
  • Bailey EJ [34]
  • Lomakin IB [34]
  • Zhang K [34]
  • Xiong Y [34]
  • Chai P [34]
  • Wang S [34]
  • Wang J [34]
  • Zhang Y [34]
  • Liu J [34]

Journal

  • NAT COMMUN [38]
  • TO BE PUBLISHED [23]

Software

  • CRYOSPARC [34]

Microscope

  • FEI TECNAI F30 [35]
  • FEI TITAN KRIOS [26]

Electron Source

  • FIELD EMISSION GUN [61]

Film or detector model

  • GATAN K3 6K X 4K [61]

External links

  • AlphaFold DB [37]
  • ChEBI [37]
  • ChEMBL [37]
  • DrugBank [37]
  • PDB [37]
  • PDBe-Kb [37]
  • Pfam [37]
  • UniProt [37]
  • Gene Ontology [6]
  • InterPro [6]
  • Complex Portal [2]
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Showing 1 - 10 of 61. Page 1 of 7
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EMD-71329
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3D View
In situ human P-Z state 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 9p6z

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71331
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3D View
In situ human P-E state 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9p72

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71333
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3D View
In situ human eEF1A-A/T-P state 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 9p76

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71334
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In situ human Hibernating rotate 3 with E-site tRNA state 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9p78
Q-score: 0.471

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71335
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3D View
In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome
Release date: Dec. 24, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9p79
Q-score: 0.421

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71336
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3D View
In situ human hibernating class2 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 9p7a
Q-score: 0.492

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71337
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In situ human Hibernating class3 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9p7c
Q-score: 0.513

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71338
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3D View
In situ human Hibernating class4 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 9p7d
Q-score: 0.538

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71339
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3D View
In situ human Hibernating class5 80S ribosome
Release date: Dec. 24, 2025
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9p7e
Q-score: 0.543

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

EMD-71340
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3D View
In situ HHT and CHX treated A-P state 80S ribosome
Release date: Dec. 24, 2025
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 9p7f

Zheng W, Zhang Y, Wang J, Wang S, Chai P, Bailey EJ, Zhu C, Guo W, Devarkar SC, Wu S, Lin J, Zhang K, Liu J, Lomakin IB, Xiong Y

Nat Commun (2025) 16 pp. 10757-10757 [ DOI: doi:10.1038/s41467-025-65795-9 Pubmed: 41315256 ]

Sort by: Download
Showing 1 - 10 of 61. Page 1 of 7
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [61]

Current status

  • REL [44]
  • OBS [17]

Sample type

  • Complex [61]
  • Ligand [54]
  • Protein [54]
  • RNA [54]

Organism

  • Homo sapiens [61]

EM Method

  • Single-particle [61]

Resolution

  • ≥ 2Å and < 3Å [41]
  • ≥ 3Å and < 4Å [19]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 2-5 MDa [35]
  • 5-10 MDa [2]

Release Date

  • 2025 [60]
  • 2024 [1]

Author by name

  • Wei Z [56]
  • Yong X [56]
  • Bailey EJ [38]
  • Chai P [38]
  • Devarkar SC [38]
  • Guo W [38]
  • Lin J [38]
  • Liu J [38]
  • Lomakin IB [38]
  • Wang J [38]
  • Wang S [38]
  • Wu S [38]
  • Xiong Y [38]
  • Zhang K [38]
  • Zhang Y [38]
  • Zheng W [38]
  • Zhu C [38]
  • Yong Z [1]

Author by ORCID

  • Guo W [34]
  • Lin J [34]
  • Bailey EJ [34]
  • Lomakin IB [34]
  • Zhang K [34]
  • Xiong Y [34]
  • Chai P [34]
  • Wang S [34]
  • Wang J [34]
  • Zhang Y [34]
  • Liu J [34]

Journal

  • NAT COMMUN [38]
  • TO BE PUBLISHED [23]

Software

  • CRYOSPARC [34]

Microscope

  • FEI TECNAI F30 [35]
  • FEI TITAN KRIOS [26]

Electron Source

  • FIELD EMISSION GUN [61]

Film or detector model

  • GATAN K3 6K X 4K [61]

External links

  • AlphaFold DB [37]
  • ChEBI [37]
  • ChEMBL [37]
  • DrugBank [37]
  • PDB [37]
  • PDBe-Kb [37]
  • Pfam [37]
  • UniProt [37]
  • Gene Ontology [6]
  • InterPro [6]
  • Complex Portal [2]