Electron Microscopy Data Bank

Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Current Database

Current status

Sample type

Organism

Mus musculus [114]
Homo sapiens [105]
Saccharomyces cerevisiae [66]
(no species) [28]
Yersinia entomophaga [23]
Severe acute respiratory syndrome coronavirus [15]
Chlamydomonas reinhardtii [15]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [14]
Drosophila melanogaster [11]
Zaire ebolavirus [9]
Bacillus subtilis [9]
Thalassiosira pseudonana [9]
Escherichia coli [9]
Rattus norvegicus [7]
Chrysotila carterae [7]
Spinacia oleracea [7]
Caenorhabditis elegans [7]
Synechocystis sp. pcc 6803 [5]
Porphyridium purpureum [5]
Candidatus amoebophilus asiaticus [5]
Pseudomonas aeruginosa [4]
Plasmodium falciparum [4]
Legionella pneumophila [4]
Zika virus [4]
Chlorocebus aethiops [4]
Cavia porcellus [3]
Enterococcus faecium [3]
Mumps orthorubulavirus [3]
Candidatus viridilinea mediisalina [3]
Dictyostelium discoideum [3]
Allium cepa [3]
Caulobacter vibrioides [3]
Escherichia coli [3]
Lithobates catesbeianus [3]
Hiv-1 vector pnl4-3 [2]
Caulobacter vibrioides [2]
Corynebacterium glutamicum [2]
Aureispira sp. [2]
Bacillus subtilis [2]
Thermoanaerobacter kivui [2]
Toxoplasma gondii [2]
Haloferax elongans [2]
Halogeometricum borinquense [2]
Schizosaccharomyces pombe [2]
Saccharomyces cerevisiae [2]
Saccharomyces cerevisiae [2]
Brochothrix phage nf5 [2]
Coxiella burnetii [2]
Danio rerio [2]
Streptomyces coelicolor [1]
Mus sp. [1]
Synechococcus elongatus [1]
Aureispira sp. ccb-qb1 [1]
Nannochloropsis oceanica [1]
Burkholderia thailandensis [1]
Psychrobacter urativorans [1]
Tetrahymena thermophila [1]
(no species) [1]

EM Method

Resolution

Release Date

Author by name

Baumeister W [85]
Pilhofer M [70]
Chlanda P [49]
Engel BD [44]
Wachsmuth-melm M [44]
Plitzko JM [43]
Weiss GL [43]
Makroczyova J [41]
Zhang X [39]
Fernandez-busnadiego R [34]
Guo Q [30]
Jasnin M [30]
Ananda VY [29]
Chao LH [29]
Navarro PP [29]
Li W [28]
Peterl S [28]
Sali A [28]
Villa E [28]
Wollweber F [28]
Wietrzynski W [27]
Li A [26]
Liu X [26]
Stevens R [26]
Stevens RC [26]
Sun L [26]
White K [26]
White KL [26]
Yu B [26]
Kukulski W [25]
Schaffer M [25]
Beck F [24]
Hoffmann PC [24]
Erdmann PS [23]
Feldmuller M [23]
Klumpe S [23]
Lien YW [23]
Mahamid J [23]
Ali I [22]
Chan DC [22]
Fischer K [22]
Fry MY [22]
Ge Y [22]
Ha LL [22]
Hakim P [22]
Inde Z [22]
Kleinstiver BP [22]
Landoni JC [22]
Luce BE [22]
Lugo CM [22]
Mcdonald JL [22]
Qin X [22]
Rath S [22]
Sarosiek KA [22]
Elferich J [21]
Wilfling F [21]
Afanasyev P [20]
Beck M [20]
Ericson CF [20]
Feldmueller M [20]
Hurst M [20]
Klein S [20]
Schoof M [20]
Du W [19]
Xu J [19]
Kolovou A [17]
Pogliano K [17]
Collado J [16]
Winter SL [16]
Amorim MJ [15]
Boulanger J [15]
Li Z [15]
Schorb M [15]
Schwab Y [15]
Vale-costa S [15]
Bharat TAM [14]
Bohnert M [14]
Borgeaud AC [14]
Brugger B [14]
Diep DTV [14]
Fausten RM [14]
Golani G [14]
Gouaux E [14]
Hugenroth M [14]
Khanna K [14]
Kim H [14]
Krischuns T [14]
Lolicato F [14]
Maldener I [14]
Matsui A [14]
Nickel W [14]
O Riain A [14]
Percifull L [14]
Plitzko J [14]
Schuberth C [14]
Schulman BA [14]
Schwarz US [14]
Spangler CJ [14]
Walte M [14]
Bauerlein FJB [13]

Author by ORCID

Pilhofer M [57]
Chlanda P [48]
Weiss GL [43]
Engel BD [41]
Plitzko JM [37]
Baumeister W [36]
Wachsmuth-melm M [36]
Jasnin M [30]
Chao LH [29]
Wollweber F [28]
Sali A [26]
Sun L [26]
Zhang X [26]
Kukulski W [25]
Feldmuller M [23]
Klumpe S [23]
Lien YW [23]
Guo Q [23]
Inde Z [22]
Ge Y [22]
Chan DC [22]
Landoni JC [22]
Mcdonald JL [22]
Sarosiek KA [22]
Hakim P [22]
Qin X [22]
Ha LL [22]
Lugo CM [22]
Villa E [21]
Hurst M [20]
Makroczyova J [20]
Schoof M [20]
Ericson CF [20]
Afanasyev P [20]
Klein S [19]
Xu J [19]
Mahamid J [18]
Wilfling F [16]
Kolovou A [16]
Vale-costa S [15]
Amorim MJ [15]
Khanna K [14]
Lolicato F [14]
Bharat TAM [14]
O'riain A [14]
Schulman BA [14]
Gouaux E [14]
Brecht R [13]
Lahr C [13]
Hosseinzadeh M [13]
Reddmann N [13]
Beyer D [13]
Pogliano K [13]
Fernandez-busnadiego R [13]
Herrmann A [13]
Wozny MR [12]
Sun S [12]
Sui H [12]
Borgeaud AC [12]
Burgoyne T [12]
Kim J [11]
Erdmann PS [11]
Wietrzynski W [11]
Nyman M [11]
Klena N [11]
Hoffmann PC [11]
Li M [11]
Liu Q [10]
Zhu X [10]
Schaffer M [10]
Gui M [10]
Fung HKH [10]
Beck M [10]
Schuller JM [10]
Elferich J [10]
Ma S [10]
Muller CW [10]
Zagoriy I [10]
Li L [10]
Hummer G [9]
Coscia F [9]
Vazzana R [9]
Vallbracht M [9]
Matos J [9]
Demulder M [9]
Kalebic N [9]
Silva M [9]
Perone G [9]
Sugie J [9]
Hugener J [9]
Nguyen HTD [9]
Bieber A [8]
Bartenschlager R [8]
Pfeffer S [8]
Wettstein R [8]
Raunser S [8]
Strauss M [8]
Wang Z [8]
Schneider J [8]
Martinez-sanchez A [8]

Journal

NAT COMMUN [92]
PNAS [62]
ELIFE [55]
CELL [52]
TO BE PUBLISHED [34]
NAT MICROBIOL [31]
BIORXIV [30]
DEV CELL [27]
EMBO J [25]
NAT METHODS [19]
CELL HOST MICROBE [18]
SCIENCE [15]
MOL CELL [12]
CELL REP [11]
SCI ADV [11]
J CELL BIOL [8]
NATURE [7]
EMBO REP [5]
PLOS BIOL [5]
STRUCTURE [5]
ACTA NEUROPATHOL [4]
CELL MICROBIOL [4]
COMMUN BIOL [4]
J MICROSC [4]
J STRUCT BIOL [4]
MBIO [4]
NAT STRUCT MOL BIOL [4]
SCI REP [4]
CURR BIOL [3]
FRONT MICROBIOL [3]
PLOS COMPUT BIOL [3]
ADV SCI [2]
INFECT.IMMUN. [2]
MOL BIOL CELL [2]
NAT PLANTS [2]
NUCLEIC ACIDS RES [2]
ACTA CRYSTALLOGR D STRUCT BIOL [1]
BIOL IMAGING [1]
FRONT CELL NEUROSCI [1]
J CELL SCI [1]
MICRO PUBL BIOL [1]
MICROSC MICROANAL [1]
NAT MATER [1]
NAT PROTOC [1]

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 554. Page 1 of 56

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EMDB [554]

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EMD-55810

Download Map

3D View

Deconvolved piDPC tomogram of lift-out lamellae from cell-derived matrices

Release date: Dec. 17, 2025
EM Method: Tomography

Kirchweger P, Seifer S, Wolf SG, Varsano N, Zens B, Schur FK, Elbaum M

bioRxiv (2025) [ DOI: doi:10.1101/2025.11.26.690630 ]

EMD-55811

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3D View

Deconvolved piDPC tomogram of lift-out lamellae from cell-derived matrices

Release date: Dec. 17, 2025
EM Method: Tomography

Kirchweger P, Seifer S, Wolf SG, Varsano N, Zens B, Schur FK, Elbaum M

bioRxiv (2025) [ DOI: doi:10.1101/2025.11.26.690630 ]

EMD-55812

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3D View

Deconvolved piDPC tomogram of lift-out lamellae from cell-derived matrices recorded on the Opal detector

Release date: Dec. 17, 2025
EM Method: Tomography

Kirchweger P, Seifer S, Wolf SG, Varsano N, Zens B, Schur FK, Elbaum M

bioRxiv (2025) [ DOI: doi:10.1101/2025.11.26.690630 ]

EMD-63704

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3D View

Tomogram of bacteriophage NF5-infected Brochothrix thermosphacta cell 1 out of 2

Release date: Dec. 17, 2025
EM Method: Tomography

Peng YN, Liu HR

To Be Published

EMD-63721

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3D View

Tomogram of bacteriophage NF5-infected Brochothrix thermosphacta cell 2 out of 2

Release date: Dec. 17, 2025
EM Method: Tomography

Peng YN, Liu HR

To Be Published

EMD-54480

Download Map

3D View

Tomogram of unbudded yeast cell overexpressing Ldm1

Release date: Dec. 10, 2025
EM Method: Tomography

Zhao XT, Diep DTV, Percifull L, Fausten RM, Hugenroth M, Hohne P, Leite B, Esch BM, Collado J, Keller J, Wilmes S, Turhan MA, Walte M, Becker T, Kummel D, Schuberth C, Fernandez-Busnadiego R, Frohlich F, Wedlich-Soldner R, Bohnert M

Cell Rep (2025) 44 pp. 116475-116475 [ DOI: doi:10.1016/j.celrep.2025.116475 Pubmed: 41201089 ]

EMD-54483

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3D View

Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor

Release date: Dec. 10, 2025
EM Method: Tomography

Cell Rep (2025) 44 pp. 116475-116475 [ DOI: doi:10.1016/j.celrep.2025.116475 Pubmed: 41201089 ]

EMD-55210

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3D View

In situ cryo-ET tomogram of HeLa TMEM192-3xHA Control cell showcasing an endolysosomal structure.

Release date: Dec. 3, 2025
EM Method: Tomography

Kraus F, He Y, Jiang Y, Li D, Ambaw YA, Gasparoli FM, Paulo JA, Walther TC, Farese R, Gygi SP, Wilfling F, Harper JW

bioRxiv (2025) [ Pubmed: 41279717 DOI: doi:10.1101/2025.10.08.681047 ]

EMD-55211

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3D View

In situ cryo-ET tomogram of HeLa TMEM192-3xHA ASAH1-/- cell showcasing an endolysosomal structure

Release date: Dec. 3, 2025
EM Method: Tomography

Kraus F, He Y, Jiang Y, Li D, Ambaw YA, Gasparoli FM, Paulo JA, Walther TC, Farese R, Gygi SP, Wilfling F, Harper JW

bioRxiv (2025) [ Pubmed: 41279717 DOI: doi:10.1101/2025.10.08.681047 ]

EMD-71801

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3D View

Cryo ET of Native Hippocampal Glutamatergic Synapses Using Dimeric AuNP Labeling

Release date: Dec. 3, 2025
EM Method: Tomography

Kim H, Spangler CJ, Matsui A, Elferich J, Kim J, Roseborough A, Nyman M, Lahtinen TM, Gouaux E

PNAS (2025) 122 pp. e2524034122-e2524034122 [ Pubmed: 41284882 DOI: doi:10.1073/pnas.2524034122 ]

Sort by: Download

Showing 1 - 10 of 554. Page 1 of 56

Display:

Statistics

Download

Select database:

EMDB [554]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Mus musculus [114]
Homo sapiens [105]
Saccharomyces cerevisiae [66]
(no species) [28]
Yersinia entomophaga [23]
Severe acute respiratory syndrome coronavirus [15]
Chlamydomonas reinhardtii [15]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [14]
Drosophila melanogaster [11]
Zaire ebolavirus [9]
Bacillus subtilis [9]
Thalassiosira pseudonana [9]
Escherichia coli [9]
Rattus norvegicus [7]
Chrysotila carterae [7]
Spinacia oleracea [7]
Caenorhabditis elegans [7]
Synechocystis sp. pcc 6803 [5]
Porphyridium purpureum [5]
Candidatus amoebophilus asiaticus [5]
Pseudomonas aeruginosa [4]
Plasmodium falciparum [4]
Legionella pneumophila [4]
Zika virus [4]
Chlorocebus aethiops [4]
Cavia porcellus [3]
Enterococcus faecium [3]
Mumps orthorubulavirus [3]
Candidatus viridilinea mediisalina [3]
Dictyostelium discoideum [3]
Allium cepa [3]
Caulobacter vibrioides [3]
Escherichia coli [3]
Lithobates catesbeianus [3]
Hiv-1 vector pnl4-3 [2]
Caulobacter vibrioides [2]
Corynebacterium glutamicum [2]
Aureispira sp. [2]
Bacillus subtilis [2]
Thermoanaerobacter kivui [2]
Toxoplasma gondii [2]
Haloferax elongans [2]
Halogeometricum borinquense [2]
Schizosaccharomyces pombe [2]
Saccharomyces cerevisiae [2]
Saccharomyces cerevisiae [2]
Brochothrix phage nf5 [2]
Coxiella burnetii [2]
Danio rerio [2]
Streptomyces coelicolor [1]
Mus sp. [1]
Synechococcus elongatus [1]
Aureispira sp. ccb-qb1 [1]
Nannochloropsis oceanica [1]
Burkholderia thailandensis [1]
Psychrobacter urativorans [1]
Tetrahymena thermophila [1]
(no species) [1]

EM Method

Resolution

Release Date

Author by name

Baumeister W [85]
Pilhofer M [70]
Chlanda P [49]
Engel BD [44]
Wachsmuth-melm M [44]
Plitzko JM [43]
Weiss GL [43]
Makroczyova J [41]
Zhang X [39]
Fernandez-busnadiego R [34]
Guo Q [30]
Jasnin M [30]
Ananda VY [29]
Chao LH [29]
Navarro PP [29]
Li W [28]
Peterl S [28]
Sali A [28]
Villa E [28]
Wollweber F [28]
Wietrzynski W [27]
Li A [26]
Liu X [26]
Stevens R [26]
Stevens RC [26]
Sun L [26]
White K [26]
White KL [26]
Yu B [26]
Kukulski W [25]
Schaffer M [25]
Beck F [24]
Hoffmann PC [24]
Erdmann PS [23]
Feldmuller M [23]
Klumpe S [23]
Lien YW [23]
Mahamid J [23]
Ali I [22]
Chan DC [22]
Fischer K [22]
Fry MY [22]
Ge Y [22]
Ha LL [22]
Hakim P [22]
Inde Z [22]
Kleinstiver BP [22]
Landoni JC [22]
Luce BE [22]
Lugo CM [22]
Mcdonald JL [22]
Qin X [22]
Rath S [22]
Sarosiek KA [22]
Elferich J [21]
Wilfling F [21]
Afanasyev P [20]
Beck M [20]
Ericson CF [20]
Feldmueller M [20]
Hurst M [20]
Klein S [20]
Schoof M [20]
Du W [19]
Xu J [19]
Kolovou A [17]
Pogliano K [17]
Collado J [16]
Winter SL [16]
Amorim MJ [15]
Boulanger J [15]
Li Z [15]
Schorb M [15]
Schwab Y [15]
Vale-costa S [15]
Bharat TAM [14]
Bohnert M [14]
Borgeaud AC [14]
Brugger B [14]
Diep DTV [14]
Fausten RM [14]
Golani G [14]
Gouaux E [14]
Hugenroth M [14]
Khanna K [14]
Kim H [14]
Krischuns T [14]
Lolicato F [14]
Maldener I [14]
Matsui A [14]
Nickel W [14]
O Riain A [14]
Percifull L [14]
Plitzko J [14]
Schuberth C [14]
Schulman BA [14]
Schwarz US [14]
Spangler CJ [14]
Walte M [14]
Bauerlein FJB [13]

Author by ORCID

Pilhofer M [57]
Chlanda P [48]
Weiss GL [43]
Engel BD [41]
Plitzko JM [37]
Baumeister W [36]
Wachsmuth-melm M [36]
Jasnin M [30]
Chao LH [29]
Wollweber F [28]
Sali A [26]
Sun L [26]
Zhang X [26]
Kukulski W [25]
Feldmuller M [23]
Klumpe S [23]
Lien YW [23]
Guo Q [23]
Inde Z [22]
Ge Y [22]
Chan DC [22]
Landoni JC [22]
Mcdonald JL [22]
Sarosiek KA [22]
Hakim P [22]
Qin X [22]
Ha LL [22]
Lugo CM [22]
Villa E [21]
Hurst M [20]
Makroczyova J [20]
Schoof M [20]
Ericson CF [20]
Afanasyev P [20]
Klein S [19]
Xu J [19]
Mahamid J [18]
Wilfling F [16]
Kolovou A [16]
Vale-costa S [15]
Amorim MJ [15]
Khanna K [14]
Lolicato F [14]
Bharat TAM [14]
O'riain A [14]
Schulman BA [14]
Gouaux E [14]
Brecht R [13]
Lahr C [13]
Hosseinzadeh M [13]
Reddmann N [13]
Beyer D [13]
Pogliano K [13]
Fernandez-busnadiego R [13]
Herrmann A [13]
Wozny MR [12]
Sun S [12]
Sui H [12]
Borgeaud AC [12]
Burgoyne T [12]
Kim J [11]
Erdmann PS [11]
Wietrzynski W [11]
Nyman M [11]
Klena N [11]
Hoffmann PC [11]
Li M [11]
Liu Q [10]
Zhu X [10]
Schaffer M [10]
Gui M [10]
Fung HKH [10]
Beck M [10]
Schuller JM [10]
Elferich J [10]
Ma S [10]
Muller CW [10]
Zagoriy I [10]
Li L [10]
Hummer G [9]
Coscia F [9]
Vazzana R [9]
Vallbracht M [9]
Matos J [9]
Demulder M [9]
Kalebic N [9]
Silva M [9]
Perone G [9]
Sugie J [9]
Hugener J [9]
Nguyen HTD [9]
Bieber A [8]
Bartenschlager R [8]
Pfeffer S [8]
Wettstein R [8]
Raunser S [8]
Strauss M [8]
Wang Z [8]
Schneider J [8]
Martinez-sanchez A [8]

Journal

NAT COMMUN [92]
PNAS [62]
ELIFE [55]
CELL [52]
TO BE PUBLISHED [34]
NAT MICROBIOL [31]
BIORXIV [30]
DEV CELL [27]
EMBO J [25]
NAT METHODS [19]
CELL HOST MICROBE [18]
SCIENCE [15]
MOL CELL [12]
CELL REP [11]
SCI ADV [11]
J CELL BIOL [8]
NATURE [7]
EMBO REP [5]
PLOS BIOL [5]
STRUCTURE [5]
ACTA NEUROPATHOL [4]
CELL MICROBIOL [4]
COMMUN BIOL [4]
J MICROSC [4]
J STRUCT BIOL [4]
MBIO [4]
NAT STRUCT MOL BIOL [4]
SCI REP [4]
CURR BIOL [3]
FRONT MICROBIOL [3]
PLOS COMPUT BIOL [3]
ADV SCI [2]
INFECT.IMMUN. [2]
MOL BIOL CELL [2]
NAT PLANTS [2]
NUCLEIC ACIDS RES [2]
ACTA CRYSTALLOGR D STRUCT BIOL [1]
BIOL IMAGING [1]
FRONT CELL NEUROSCI [1]
J CELL SCI [1]
MICRO PUBL BIOL [1]
MICROSC MICROANAL [1]
NAT MATER [1]
NAT PROTOC [1]

Software

Microscope

Electron Source

Film or detector model

External links