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Filter By

Current Database

  • EMDB [2144]

Current status

  • REL [2144]

Sample type

  • Sample [1618]
  • Protein [1114]
  • Complex [630]
  • Virus [561]
  • Cellular component [119]
  • RNA [106]
  • Ligand [44]
  • DNA [31]
  • Other [9]
  • Cell [6]
  • Tissue [4]
  • Em label [1]

Organism

  • Homo sapiens [421]
  • Escherichia coli [224]
  • Saccharomyces cerevisiae [179]
  • Bos taurus [92]
  • Mus musculus [61]
  • Synthetic construct [54]
  • Human immunodeficiency virus 1 [51]
  • Severe acute respiratory syndrome coronavirus [46]
  • Oryctolagus cuniculus [41]
  • Rattus norvegicus [30]
  • Salmonella phage p22 [22]
  • Escherichia virus t7 [22]
  • Escherichia coli [21]
  • Hepatitis b virus [20]
  • Rice dwarf virus [19]
  • Escherichia coli [19]
  • Salmonella enterica [18]
  • Enterovirus c [17]
  • Thermus thermophilus [17]
  • Gallus gallus [17]
  • Enterobacteria phage t4 [16]
  • Human herpesvirus 1 [15]
  • Pseudomonas phage phi6 [15]
  • Human mastadenovirus c [15]
  • Chlamydomonas reinhardtii [15]
  • Drosophila melanogaster [15]
  • Bacillus phage spp1 [14]
  • (no species) [14]
  • Sus scrofa [14]
  • Taura syndrome virus [13]
  • Bacillus subtilis [13]
  • Macaca mulatta [13]
  • Human immunodeficiency virus [11]
  • Shigella flexneri [11]
  • Bacillus phage phi29 [10]
  • Escherichia phage ms2 [10]
  • Thermoplasma acidophilum [10]
  • Chikungunya virus [10]
  • Torpedo marmorata [10]
  • Xenopus laevis [10]
  • Staphylococcus aureus [9]
  • Escherichia coli [9]
  • Thermus thermophilus [9]
  • Ovis aries [9]
  • Rotavirus a [8]
  • Murine leukemia virus [8]
  • Rabbit hemorrhagic disease virus [8]
  • Brevibacterium linens [8]
  • Enterovirus d [8]
  • Thermomyces lanuginosus [8]
  • Caenorhabditis elegans [8]
  • Suid alphaherpesvirus 1 [7]
  • Carnivore protoparvovirus 1 [7]
  • Avian infectious bursal disease virus [7]
  • Cypovirus 1 [7]
  • Schizosaccharomyces pombe [7]
  • Yarrowia lipolytica [7]
  • Escherichia coli [7]
  • Dengue virus [6]
  • Influenza a virus [6]
  • Enterovirus c [6]
  • Dengue virus [6]
  • Pseudomonas aeruginosa [6]
  • Spinacia oleracea [6]
  • Dictyostelium discoideum [6]
  • Plasmodium falciparum [6]
  • Human herpesvirus 1 [5]
  • Bovine papillomavirus [5]
  • Pseudomonas virus prd1 [5]
  • Rotavirus a [5]
  • Avian coronavirus [5]
  • Vibrio virus nt1 [5]
  • Lassa mammarenavirus [5]
  • Enterovirus b [5]
  • Rhinovirus a [5]
  • Tobacco mosaic virus [5]
  • Mycoplasma pneumoniae [5]
  • Salmonella virus epsilon15 [5]
  • Haloarcula hispanica virus sh1 [5]
  • Enterovirus a [5]
  • Triticum aestivum [5]
  • Triticum sp. [5]
  • Ralstonia virus rsl1 [5]
  • Mus musculoides [5]
  • Komagataella phaffii [5]
  • Lactococcus phage 1358 [5]
  • Desulfovibrio vulgaris [5]
  • Equus caballus [5]
  • Camelus dromedarius [5]
  • Lactococcus phage p2 [4]
  • Paramecium bursaria chlorella virus 1 [4]
  • Pseudoalteromonas phage pm2 [4]
  • Rhodospirillum rubrum [4]
  • Brome mosaic virus [4]
  • Barley stripe mosaic virus [4]
  • Phage gifsy-2 [4]
  • Bacillus anthracis [4]
  • Pseudomonas phage phikz [4]
  • Prochlorococcus phage p-ssp7 [4]
  • Adeno-associated virus [4]

EM Method

  • Single-particle [1822]
  • Helical reconstruction [158]
  • Subtomogram averaging [81]
  • Electron Crystallography [47]
  • Tomography [36]

Resolution

  • < 2Å [14]
  • ≥ 2Å and < 3Å [40]
  • ≥ 3Å and < 4Å [147]
  • ≥ 4Å and < 5Å [139]
  • ≥ 5Å and < 6Å [39]
  • ≥ 6Å and < 8Å [210]
  • ≥ 8Å and < 12Å [397]
  • ≥ 12Å and < 16Å [280]
  • ≥ 16Å and < 20Å [257]
  • ≥ 20Å and < 30Å [446]
  • ≥ 30Å [126]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [1]
  • 1-2 MDa [2]
  • 5-10 MDa [6]
  • > 10 MDa [1]

Release Date

  • 2022 [47]
  • 2021 [49]
  • 2020 [87]
  • 2019 [79]
  • 2018 [96]
  • 2017 [83]
  • 2016 [202]
  • 2015 [175]
  • 2014 [138]
  • 2013 [206]
  • 2012 [182]
  • 2011 [143]
  • 2010 [157]
  • 2009 [142]
  • 2008 [25]
  • 2007 [118]
  • 2006 [96]
  • 2005 [43]
  • 2004 [31]
  • 2003 [37]
  • 2002 [8]

Author by name

  • Chiu W [100]
  • Rossmann MG [89]
  • Ward AB [81]
  • Saibil HR [67]
  • Grigorieff N [65]
  • Frank J [63]
  • Orlova EV [63]
  • Zhang X [57]
  • Chipman PR [50]
  • Butcher SJ [48]
  • Caston JR [48]
  • Jiang W [48]
  • Steven AC [48]
  • Jakana J [44]
  • Luque D [43]
  • Zhou ZH [42]
  • Cheng N [41]
  • Llorca O [41]
  • Wilson IA [41]
  • Burton DR [40]
  • Conway JF [40]
  • Ludtke SJ [40]
  • Nogales E [40]
  • Lyumkis D [39]
  • Acharya P [37]
  • Baker TS [37]
  • Mielke T [37]
  • Carrascosa JL [36]
  • Haynes BF [36]
  • Scheres SHW [36]
  • Schmid MF [36]
  • Bowman VD [35]
  • Lu X [35]
  • Potter CS [35]
  • Bamford DH [34]
  • Cottrell CA [34]
  • Schoehn G [34]
  • Carragher B [33]
  • Huiskonen JT [33]
  • Kwong PD [33]
  • Liu X [33]
  • Mascola JR [33]
  • Zhou T [33]
  • Alam SM [32]
  • Beckmann R [32]
  • Montefiori DC [32]
  • Moody MA [32]
  • Valle M [32]
  • Wiehe K [32]
  • Lee JH [31]
  • Bottcher B [30]
  • Edwards RJ [30]
  • Ehrenberg M [30]
  • Gilbert RJC [30]
  • Gobeil SMC [30]
  • Janowska K [30]
  • Li D [30]
  • Mansouri K [30]
  • Parks R [30]
  • Stalls V [30]
  • Toropova K [30]
  • Battisti AJ [29]
  • Deyton M [29]
  • Gilbert RJ [29]
  • Manne K [29]
  • Sempowski GD [29]
  • Berninghausen O [28]
  • Clare DK [28]
  • Graham BS [28]
  • Lander GC [28]
  • Moore JP [28]
  • Moores CA [28]
  • Trus BL [28]
  • Belnap DM [27]
  • Feldman J [27]
  • Hauser BM [27]
  • Kopp M [27]
  • Schmidt AG [27]
  • Wang Y [27]
  • Andersen H [26]
  • Ban N [26]
  • Baric RS [26]
  • Barr M [26]
  • Bock KW [26]
  • Cai F [26]
  • Cain DW [26]
  • Caradonna TM [26]
  • Chen S [26]
  • Cronin K [26]
  • Cupo A [26]
  • Demarco CT [26]
  • Denny TN [26]
  • Foulger A [26]
  • Gee-lai V [26]
  • Hernandez GE [26]
  • Jiang C [26]
  • Khayat R [26]
  • Laurinmaki P [26]
  • Lee E [26]
  • Lewis MG [26]

Author by ORCID

  • Chipman PR [3]
  • Xiao C [2]
  • Battisti AJ [2]
  • Moores CA [1]
  • Rabl J [1]
  • Gregorio GG [1]
  • Akahata W [1]
  • Lea SM [1]
  • Cheng Y [1]
  • Aksyuk AA [1]
  • Prince JT [1]
  • Sazanov LA [1]
  • Schweikardt T [1]
  • Evans DJ [1]
  • Smith DM [1]
  • Ludtke SJ [1]
  • Chang SC [1]
  • Goulet A [1]
  • Shen PS [1]
  • Sewell BT [1]
  • Sanz-garcia E [1]
  • Williams DT [1]
  • Fujiyoshi Y [1]
  • Heymann JB [1]
  • Chiu W [1]
  • Fontana J [1]
  • Letts JA [1]
  • Xiang Y [1]
  • Craig A [1]
  • Nissen P [1]
  • Winkler DC [1]
  • Bhella D [1]
  • Patterton HG [1]
  • Nelson CD [1]
  • Nilsson J [1]

Journal

  • PNAS [244]
  • STRUCTURE [173]
  • J VIROL [166]
  • J MOL BIOL [160]
  • NATURE [159]
  • CELL [155]
  • NAT STRUCT MOL BIOL [131]
  • ELIFE [104]
  • EMBO J [90]
  • MOL CELL [84]
  • SCIENCE [83]
  • J BIOL CHEM [73]
  • NAT COMMUN [61]
  • J STRUCT BIOL [50]
  • PLOS PATHOG [40]
  • TO BE PUBLISHED [39]
  • BIORXIV [32]
  • CELL REP [26]
  • VIROLOGY [22]
  • NUCLEIC ACIDS RES [21]
  • PLOS BIOL [20]
  • PLOS ONE [19]
  • SCI REP [13]
  • J CELL BIOL [12]
  • J LIPID RES [12]
  • INT J MOL SCI [11]
  • ACS CENT SCI [10]
  • EMBO REP [10]
  • GENES DEV [10]
  • ACS NANO [9]
  • MBIO [8]
  • MOL MICROBIOL [8]
  • J GEN VIROL [7]
  • MICROSCOPY [7]
  • NANOSCALE [7]
  • RNA [7]
  • SCI ADV [7]
  • ACTA CRYSTALLOGR D STRUCT BIOL [6]
  • BIOCHEM J [6]
  • BIOCHIM BIOPHYS ACTA [6]
  • J BACTERIOL [6]
  • MOL BIOL CELL [6]
  • CURR BIOL [5]
  • IUCRJ [5]
  • CELL CYCLE [4]
  • DEV CELL [4]
  • OPEN BIOL [4]
  • CELL RES [3]
  • INT J BIOL MACROMOL [3]
  • J IMMUNOL [3]
  • NAT MICROBIOL [3]
  • PHYS BIOL [3]
  • PROTEIN CELL [3]
  • PROTEIN SCI [3]
  • BIOMOLECULES [2]
  • BIOPOLYMERS [2]
  • BLOOD [2]
  • CELL HOST MICROBE [2]
  • DNA REPAIR (AMST) [2]
  • FEBS LETT [2]
  • IMMUNITY [2]
  • J AM CHEM SOC [2]
  • METHODS [2]
  • MOL CELLS [2]
  • NAT IMMUNOL [2]
  • NAT METHODS [2]
  • TRANSCRIPTION [2]
  • AIDS RES HUM RETROVIRUSES [1]
  • ANAL CHEM [1]
  • ANGEW CHEM INT ED ENGL [1]
  • BIOPHYS J [1]
  • BIOPHYS REV [1]
  • CELL DISCOV [1]
  • CELL MICROBIOL [1]
  • CYSTAL RESEARCH AND TECHNOLOGY [1]
  • FEBS J [1]
  • HUM GENE THER [1]
  • J CELL SCI [1]
  • J SCI REP [1]
  • MICROSC MICROANAL [1]
  • NANOTECHNOL RUSSIA [1]
  • NEURON [1]
  • NPJ BREAST CANCER [1]
  • SCI TRANSL MED [1]
  • SMALL [1]
  • TRENDS BIOCHEM SCI [1]
  • VACCINE [1]
  • VIRUS RES [1]
  • VIRUSES [1]

Software

  • RELION [417]
  • SPIDER [219]
  • CTFFIND [207]
  • CHIMERA [167]
  • EMAN [116]
  • GCTF [100]
  • FREALIGN [82]
  • XMIPP [80]
  • IMAGIC [72]
  • AUTO3DEM [66]
  • EMAN2 [55]
  • SITUS [47]
  • CRYOSPARC [45]
  • MRC [41]
  • URO [37]
  • IMAGIC, SPIDER [30]
  • CTFFIND3 [26]
  • EMFIT [26]
  • UCSF CHIMERA [26]
  • IMOD [25]
  • SPIDER, FREALIGN [24]
  • O [23]
  • EM3DR2 [21]
  • APPION [19]
  • BSOFT [19]
  • CTFTILT [19]
  • MULTI-PATH SA [16]
  • TOMOCTF [16]
  • CTFFIND3, RELION [15]
  • MDFF [15]
  • SPARX [14]
  • PHOELIX, SUPRIM [13]
  • IPET [12]
  • CHIMERA, FLEX-EM [11]
  • CHIMERA, SITUS [11]
  • CISTEM [11]
  • DIREX [11]
  • EMAN1 [11]
  • GAP [11]
  • IHRSR [11]
  • IMAGIC-5 [11]
  • JSPR, EMAN2, EMAN [11]
  • SPIDER PACKAGE [11]
  • SPIDER XMIPP [11]
  • UNBLUR, CTFFIND4, FREALIGN [11]
  • WARP [11]
  • IMAGIC-5, SPIDER [10]
  • PHOELIX [10]
  • SPARX/EMAN2 [10]
  • SPIDER, EMAN [10]
  • EMAN, XMIPP [9]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
  • PFT2, EM3DR2 [9]
  • CHIMERA, MDFF [8]
  • EMAN2, FREALIGN [8]
  • EMPFT EM3DR [8]
  • FLEX-EM [8]
  • IMAGIC, SPIDER, EMAN [8]
  • IMOD, DYNAMO [8]
  • JSPR [8]
  • MATLAB [8]
  • MOLREP, CHIMERA [8]
  • MPSA, EMAN, EMAN2 [8]
  • RELION, FREALIGN [8]
  • SPIDER, IHRSR [8]
  • SPIDER, PACKAGE [8]
  • EMAN, EMAN2, XMIPP [7]
  • EMAN, SPIDER [7]
  • IMIRS [7]
  • MRC, IMAGIC, SPIDER [7]
  • PFT2 AND EM3DR2 [7]
  • PFT2, EM3DR2, POR, P3DR [7]
  • SPIDER, IMAGIC [7]
  • CTFIND3 [6]
  • DYNAMO [6]
  • EMAN, FREALIGN [6]
  • EMAN1, EMAN2 [6]
  • EMAN2, AND, SPARX [6]
  • EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
  • ETOMO [6]
  • IMOD, PRIISM/IVE [6]
  • MANUAL [6]
  • NOVACTF [6]
  • PEET [6]
  • XMIPP, ML, TOMO [6]
  • CHIMERA, CNS [5]
  • COOT, SPDBV, REFMAC5 [5]
  • CTFFIND4 [5]
  • EMAN1.8 [5]
  • EMAN2, RELION1.2 [5]
  • EMAN2, SPIDER, XMIPP [5]
  • EMAN2/SPARX [5]
  • EMPFT, POR, P3DR [5]
  • FREALIX [5]
  • IMAGIC V [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • MPSA [5]
  • PFT [5]
  • SPIDER, EMAN2 [5]
  • SPIDER, IMAGIC, GAP, CNS, XPLOR [5]

Microscope

  • FEI TITAN KRIOS [445]
  • FEI TECNAI F20 [399]
  • FEI POLARA 300 [205]
  • FEI/PHILIPS CM200FEG [153]
  • FEI TECNAI F30 [100]
  • FEI TECNAI 12 [81]
  • FEI TECNAI 20 [79]
  • FEI/PHILIPS CM300FEG/T [64]
  • JEOL 2010F [63]
  • JEOL 2200FS [61]
  • JEOL 3200FSC [42]
  • JEOL 1230 [34]
  • FEI TALOS ARCTICA [32]
  • FEI TECNAI SPIRIT [32]
  • FEI/PHILIPS EM420 [32]
  • FEI/PHILIPS CM120T [29]
  • FEI/PHILIPS CM200T [24]
  • JEOL 4000EX [24]
  • FEI/PHILIPS CM200FEG/ST [22]
  • JEOL 2100F [22]
  • JEOL 1200EXII [18]
  • JEOL 3000SFF [17]
  • JEOL 4000 [17]
  • JEOL 3200FS [16]
  • JEOL KYOTO-3000SFF [16]
  • FEI TITAN [15]
  • ZEISS LIBRA120PLUS [14]
  • JEOL 1200EX [9]
  • FEI/PHILIPS CM200FEG/UT [7]
  • FEI TECNAI 10 [6]
  • FEI TECNAI ARCTICA [6]
  • JEOL 2000EX [6]
  • JEOL 2100 [6]
  • JEOL 2200FSC [5]
  • FEI/PHILIPS CM12 [4]
  • FEI/PHILIPS CM300FEG/ST [4]
  • OTHER [4]
  • JEOL 100CX [3]
  • JEOL CRYO ARM 200 [3]
  • TFS GLACIOS [3]
  • FEI/PHILIPS CM300FEG/HE [2]
  • FEI/PHILIPS EM400 [2]
  • JEOL 1200 [2]
  • JEOL 1400 [2]
  • JEOL 2010HT [2]
  • JEOL 2010UHR [2]
  • JEOL CRYO ARM 300 [2]
  • TFS KRIOS [2]
  • TFS TALOS F200C [2]
  • FEI/PHILIPS CM200FEG/SOPHIE [1]
  • HITACHI EF2000 [1]
  • HITACHI H-9500SD [1]
  • HITACHI H7600 [1]
  • JEOL 2000EXII [1]
  • JEOL 2010 [1]
  • JEOL 2010HC [1]
  • TFS TALOS L120C [1]
  • ZEISS LEO912 [1]

Electron Source

  • FIELD EMISSION GUN [1760]
  • LAB6 [268]
  • TUNGSTEN HAIRPIN [108]
  • OTHER [9]

Film or detector model

  • KODAK SO-163 FILM [946]
  • GATAN K2 SUMMIT 4K X 4K [214]
  • GATAN ULTRASCAN 4000 4K X 4K [184]
  • FEI FALCON II 4K X 4K [85]
  • GATAN K2 4K X 4K [61]
  • OTHER [58]
  • TVIPS TEMCAM-F416 4K X 4K [56]
  • FEI EAGLE 4K X 4K [55]
  • GATAN K3 6K X 4K [47]
  • FEI FALCON III 4K X 4K [44]
  • GENERIC CCD [36]
  • GENERIC GATAN 4K X 4K [36]
  • GATAN K2 QUANTUM 4K X 4K [28]
  • TVIPS TEMCAM-F415 4K X 4K [27]
  • DIRECT ELECTRON DE-20 5K X 3K [24]
  • FEI FALCON I 4K X 4K [23]
  • FEI CETA 4K X 4K [20]
  • GENERIC GATAN [17]
  • DIRECT ELECTRON DE-12 4K X 3K [12]
  • FEI EAGLE 2K X 2K [12]
  • GENERIC TVIPS 4K X 4K [11]
  • KODAK 4489 FILM [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [10]
  • GATAN ULTRASCAN 1000 2K X 2K [7]
  • GENERIC FILM [7]
  • AGFA SCIENTA FILM [6]
  • TVIPS TEMCAM-F816 8K X 8K [6]
  • DIRECT ELECTRON DE-64 8K X 8K [5]
  • GATAN ULTRASCAN 10000 10K X 10K [3]
  • GENERIC TVIPS [3]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • GENERIC GATAN 2K X 2K [2]
  • GENERIC IMAGE PLATES [2]
  • DIRECT ELECTRON DE-10 5K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN MULTISCAN [1]
  • GATAN ORIUS SC200 2K X 2K [1]
  • PROSCAN TEM-PIV 2K X 2K [1]

External links

  • PDB [16]
  • AlphaFold DB [5]
  • PDBe-Kb [5]
  • UniProt [5]
  • Gene Ontology [1]
Sort by: Download
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EMD-14815
Download Map
3D View
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Open-ready state, Entire consensus map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.29 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14816
Download Map
3D View
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Open-ready state, PA focused map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.15 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14817
Download Map
3D View
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Open-ready state, MD focused map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.38 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14818
Download Map
3D View
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Resting state, PA focused map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.39 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14819
Download Map
3D View
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Resting state, MD focused map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.95 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14820
Download Map
3D View
Complex I from E. coli, LMNG-purified, under Turnover at pH 6, Resting state, Entire consensus map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.61 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14821
Download Map
3D View
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Closed state, Entire consensus map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.93 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14822
Download Map
3D View
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Closed state, PA focused map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.71 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14823
Download Map
3D View
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Closed state, MD focused map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.93 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

EMD-14824
Download Map
3D View
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 8, Open state, Entire consensus map
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.88 Å
EM Method: Single-particle

Kravchuk V, Petrova O, Kampjut D, Wojciechowska-Bason A, Breese Z, Sazanov L

Nature (2022) 609 pp. 808-814 [ DOI: doi:10.1038/s41586-022-05199-7 Pubmed: 36104567 ]

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Current Database

  • EMDB [2144]

Current status

  • REL [2144]

Sample type

  • Sample [1618]
  • Protein [1114]
  • Complex [630]
  • Virus [561]
  • Cellular component [119]
  • RNA [106]
  • Ligand [44]
  • DNA [31]
  • Other [9]
  • Cell [6]
  • Tissue [4]
  • Em label [1]

Organism

  • Homo sapiens [421]
  • Escherichia coli [224]
  • Saccharomyces cerevisiae [179]
  • Bos taurus [92]
  • Mus musculus [61]
  • Synthetic construct [54]
  • Human immunodeficiency virus 1 [51]
  • Severe acute respiratory syndrome coronavirus [46]
  • Oryctolagus cuniculus [41]
  • Rattus norvegicus [30]
  • Salmonella phage p22 [22]
  • Escherichia virus t7 [22]
  • Escherichia coli [21]
  • Hepatitis b virus [20]
  • Rice dwarf virus [19]
  • Escherichia coli [19]
  • Salmonella enterica [18]
  • Enterovirus c [17]
  • Thermus thermophilus [17]
  • Gallus gallus [17]
  • Enterobacteria phage t4 [16]
  • Human herpesvirus 1 [15]
  • Pseudomonas phage phi6 [15]
  • Human mastadenovirus c [15]
  • Chlamydomonas reinhardtii [15]
  • Drosophila melanogaster [15]
  • Bacillus phage spp1 [14]
  • (no species) [14]
  • Sus scrofa [14]
  • Taura syndrome virus [13]
  • Bacillus subtilis [13]
  • Macaca mulatta [13]
  • Human immunodeficiency virus [11]
  • Shigella flexneri [11]
  • Bacillus phage phi29 [10]
  • Escherichia phage ms2 [10]
  • Thermoplasma acidophilum [10]
  • Chikungunya virus [10]
  • Torpedo marmorata [10]
  • Xenopus laevis [10]
  • Staphylococcus aureus [9]
  • Escherichia coli [9]
  • Thermus thermophilus [9]
  • Ovis aries [9]
  • Rotavirus a [8]
  • Murine leukemia virus [8]
  • Rabbit hemorrhagic disease virus [8]
  • Brevibacterium linens [8]
  • Enterovirus d [8]
  • Thermomyces lanuginosus [8]
  • Caenorhabditis elegans [8]
  • Suid alphaherpesvirus 1 [7]
  • Carnivore protoparvovirus 1 [7]
  • Avian infectious bursal disease virus [7]
  • Cypovirus 1 [7]
  • Schizosaccharomyces pombe [7]
  • Yarrowia lipolytica [7]
  • Escherichia coli [7]
  • Dengue virus [6]
  • Influenza a virus [6]
  • Enterovirus c [6]
  • Dengue virus [6]
  • Pseudomonas aeruginosa [6]
  • Spinacia oleracea [6]
  • Dictyostelium discoideum [6]
  • Plasmodium falciparum [6]
  • Human herpesvirus 1 [5]
  • Bovine papillomavirus [5]
  • Pseudomonas virus prd1 [5]
  • Rotavirus a [5]
  • Avian coronavirus [5]
  • Vibrio virus nt1 [5]
  • Lassa mammarenavirus [5]
  • Enterovirus b [5]
  • Rhinovirus a [5]
  • Tobacco mosaic virus [5]
  • Mycoplasma pneumoniae [5]
  • Salmonella virus epsilon15 [5]
  • Haloarcula hispanica virus sh1 [5]
  • Enterovirus a [5]
  • Triticum aestivum [5]
  • Triticum sp. [5]
  • Ralstonia virus rsl1 [5]
  • Mus musculoides [5]
  • Komagataella phaffii [5]
  • Lactococcus phage 1358 [5]
  • Desulfovibrio vulgaris [5]
  • Equus caballus [5]
  • Camelus dromedarius [5]
  • Lactococcus phage p2 [4]
  • Paramecium bursaria chlorella virus 1 [4]
  • Pseudoalteromonas phage pm2 [4]
  • Rhodospirillum rubrum [4]
  • Brome mosaic virus [4]
  • Barley stripe mosaic virus [4]
  • Phage gifsy-2 [4]
  • Bacillus anthracis [4]
  • Pseudomonas phage phikz [4]
  • Prochlorococcus phage p-ssp7 [4]
  • Adeno-associated virus [4]

EM Method

  • Single-particle [1822]
  • Helical reconstruction [158]
  • Subtomogram averaging [81]
  • Electron Crystallography [47]
  • Tomography [36]

Resolution

  • < 2Å [14]
  • ≥ 2Å and < 3Å [40]
  • ≥ 3Å and < 4Å [147]
  • ≥ 4Å and < 5Å [139]
  • ≥ 5Å and < 6Å [39]
  • ≥ 6Å and < 8Å [210]
  • ≥ 8Å and < 12Å [397]
  • ≥ 12Å and < 16Å [280]
  • ≥ 16Å and < 20Å [257]
  • ≥ 20Å and < 30Å [446]
  • ≥ 30Å [126]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [1]
  • 1-2 MDa [2]
  • 5-10 MDa [6]
  • > 10 MDa [1]

Release Date

  • 2022 [47]
  • 2021 [49]
  • 2020 [87]
  • 2019 [79]
  • 2018 [96]
  • 2017 [83]
  • 2016 [202]
  • 2015 [175]
  • 2014 [138]
  • 2013 [206]
  • 2012 [182]
  • 2011 [143]
  • 2010 [157]
  • 2009 [142]
  • 2008 [25]
  • 2007 [118]
  • 2006 [96]
  • 2005 [43]
  • 2004 [31]
  • 2003 [37]
  • 2002 [8]

Author by name

  • Chiu W [100]
  • Rossmann MG [89]
  • Ward AB [81]
  • Saibil HR [67]
  • Grigorieff N [65]
  • Frank J [63]
  • Orlova EV [63]
  • Zhang X [57]
  • Chipman PR [50]
  • Butcher SJ [48]
  • Caston JR [48]
  • Jiang W [48]
  • Steven AC [48]
  • Jakana J [44]
  • Luque D [43]
  • Zhou ZH [42]
  • Cheng N [41]
  • Llorca O [41]
  • Wilson IA [41]
  • Burton DR [40]
  • Conway JF [40]
  • Ludtke SJ [40]
  • Nogales E [40]
  • Lyumkis D [39]
  • Acharya P [37]
  • Baker TS [37]
  • Mielke T [37]
  • Carrascosa JL [36]
  • Haynes BF [36]
  • Scheres SHW [36]
  • Schmid MF [36]
  • Bowman VD [35]
  • Lu X [35]
  • Potter CS [35]
  • Bamford DH [34]
  • Cottrell CA [34]
  • Schoehn G [34]
  • Carragher B [33]
  • Huiskonen JT [33]
  • Kwong PD [33]
  • Liu X [33]
  • Mascola JR [33]
  • Zhou T [33]
  • Alam SM [32]
  • Beckmann R [32]
  • Montefiori DC [32]
  • Moody MA [32]
  • Valle M [32]
  • Wiehe K [32]
  • Lee JH [31]
  • Bottcher B [30]
  • Edwards RJ [30]
  • Ehrenberg M [30]
  • Gilbert RJC [30]
  • Gobeil SMC [30]
  • Janowska K [30]
  • Li D [30]
  • Mansouri K [30]
  • Parks R [30]
  • Stalls V [30]
  • Toropova K [30]
  • Battisti AJ [29]
  • Deyton M [29]
  • Gilbert RJ [29]
  • Manne K [29]
  • Sempowski GD [29]
  • Berninghausen O [28]
  • Clare DK [28]
  • Graham BS [28]
  • Lander GC [28]
  • Moore JP [28]
  • Moores CA [28]
  • Trus BL [28]
  • Belnap DM [27]
  • Feldman J [27]
  • Hauser BM [27]
  • Kopp M [27]
  • Schmidt AG [27]
  • Wang Y [27]
  • Andersen H [26]
  • Ban N [26]
  • Baric RS [26]
  • Barr M [26]
  • Bock KW [26]
  • Cai F [26]
  • Cain DW [26]
  • Caradonna TM [26]
  • Chen S [26]
  • Cronin K [26]
  • Cupo A [26]
  • Demarco CT [26]
  • Denny TN [26]
  • Foulger A [26]
  • Gee-lai V [26]
  • Hernandez GE [26]
  • Jiang C [26]
  • Khayat R [26]
  • Laurinmaki P [26]
  • Lee E [26]
  • Lewis MG [26]

Author by ORCID

  • Chipman PR [3]
  • Xiao C [2]
  • Battisti AJ [2]
  • Moores CA [1]
  • Rabl J [1]
  • Gregorio GG [1]
  • Akahata W [1]
  • Lea SM [1]
  • Cheng Y [1]
  • Aksyuk AA [1]
  • Prince JT [1]
  • Sazanov LA [1]
  • Schweikardt T [1]
  • Evans DJ [1]
  • Smith DM [1]
  • Ludtke SJ [1]
  • Chang SC [1]
  • Goulet A [1]
  • Shen PS [1]
  • Sewell BT [1]
  • Sanz-garcia E [1]
  • Williams DT [1]
  • Fujiyoshi Y [1]
  • Heymann JB [1]
  • Chiu W [1]
  • Fontana J [1]
  • Letts JA [1]
  • Xiang Y [1]
  • Craig A [1]
  • Nissen P [1]
  • Winkler DC [1]
  • Bhella D [1]
  • Patterton HG [1]
  • Nelson CD [1]
  • Nilsson J [1]

Journal

  • PNAS [244]
  • STRUCTURE [173]
  • J VIROL [166]
  • J MOL BIOL [160]
  • NATURE [159]
  • CELL [155]
  • NAT STRUCT MOL BIOL [131]
  • ELIFE [104]
  • EMBO J [90]
  • MOL CELL [84]
  • SCIENCE [83]
  • J BIOL CHEM [73]
  • NAT COMMUN [61]
  • J STRUCT BIOL [50]
  • PLOS PATHOG [40]
  • TO BE PUBLISHED [39]
  • BIORXIV [32]
  • CELL REP [26]
  • VIROLOGY [22]
  • NUCLEIC ACIDS RES [21]
  • PLOS BIOL [20]
  • PLOS ONE [19]
  • SCI REP [13]
  • J CELL BIOL [12]
  • J LIPID RES [12]
  • INT J MOL SCI [11]
  • ACS CENT SCI [10]
  • EMBO REP [10]
  • GENES DEV [10]
  • ACS NANO [9]
  • MBIO [8]
  • MOL MICROBIOL [8]
  • J GEN VIROL [7]
  • MICROSCOPY [7]
  • NANOSCALE [7]
  • RNA [7]
  • SCI ADV [7]
  • ACTA CRYSTALLOGR D STRUCT BIOL [6]
  • BIOCHEM J [6]
  • BIOCHIM BIOPHYS ACTA [6]
  • J BACTERIOL [6]
  • MOL BIOL CELL [6]
  • CURR BIOL [5]
  • IUCRJ [5]
  • CELL CYCLE [4]
  • DEV CELL [4]
  • OPEN BIOL [4]
  • CELL RES [3]
  • INT J BIOL MACROMOL [3]
  • J IMMUNOL [3]
  • NAT MICROBIOL [3]
  • PHYS BIOL [3]
  • PROTEIN CELL [3]
  • PROTEIN SCI [3]
  • BIOMOLECULES [2]
  • BIOPOLYMERS [2]
  • BLOOD [2]
  • CELL HOST MICROBE [2]
  • DNA REPAIR (AMST) [2]
  • FEBS LETT [2]
  • IMMUNITY [2]
  • J AM CHEM SOC [2]
  • METHODS [2]
  • MOL CELLS [2]
  • NAT IMMUNOL [2]
  • NAT METHODS [2]
  • TRANSCRIPTION [2]
  • AIDS RES HUM RETROVIRUSES [1]
  • ANAL CHEM [1]
  • ANGEW CHEM INT ED ENGL [1]
  • BIOPHYS J [1]
  • BIOPHYS REV [1]
  • CELL DISCOV [1]
  • CELL MICROBIOL [1]
  • CYSTAL RESEARCH AND TECHNOLOGY [1]
  • FEBS J [1]
  • HUM GENE THER [1]
  • J CELL SCI [1]
  • J SCI REP [1]
  • MICROSC MICROANAL [1]
  • NANOTECHNOL RUSSIA [1]
  • NEURON [1]
  • NPJ BREAST CANCER [1]
  • SCI TRANSL MED [1]
  • SMALL [1]
  • TRENDS BIOCHEM SCI [1]
  • VACCINE [1]
  • VIRUS RES [1]
  • VIRUSES [1]

Software

  • RELION [417]
  • SPIDER [219]
  • CTFFIND [207]
  • CHIMERA [167]
  • EMAN [116]
  • GCTF [100]
  • FREALIGN [82]
  • XMIPP [80]
  • IMAGIC [72]
  • AUTO3DEM [66]
  • EMAN2 [55]
  • SITUS [47]
  • CRYOSPARC [45]
  • MRC [41]
  • URO [37]
  • IMAGIC, SPIDER [30]
  • CTFFIND3 [26]
  • EMFIT [26]
  • UCSF CHIMERA [26]
  • IMOD [25]
  • SPIDER, FREALIGN [24]
  • O [23]
  • EM3DR2 [21]
  • APPION [19]
  • BSOFT [19]
  • CTFTILT [19]
  • MULTI-PATH SA [16]
  • TOMOCTF [16]
  • CTFFIND3, RELION [15]
  • MDFF [15]
  • SPARX [14]
  • PHOELIX, SUPRIM [13]
  • IPET [12]
  • CHIMERA, FLEX-EM [11]
  • CHIMERA, SITUS [11]
  • CISTEM [11]
  • DIREX [11]
  • EMAN1 [11]
  • GAP [11]
  • IHRSR [11]
  • IMAGIC-5 [11]
  • JSPR, EMAN2, EMAN [11]
  • SPIDER PACKAGE [11]
  • SPIDER XMIPP [11]
  • UNBLUR, CTFFIND4, FREALIGN [11]
  • WARP [11]
  • IMAGIC-5, SPIDER [10]
  • PHOELIX [10]
  • SPARX/EMAN2 [10]
  • SPIDER, EMAN [10]
  • EMAN, XMIPP [9]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
  • PFT2, EM3DR2 [9]
  • CHIMERA, MDFF [8]
  • EMAN2, FREALIGN [8]
  • EMPFT EM3DR [8]
  • FLEX-EM [8]
  • IMAGIC, SPIDER, EMAN [8]
  • IMOD, DYNAMO [8]
  • JSPR [8]
  • MATLAB [8]
  • MOLREP, CHIMERA [8]
  • MPSA, EMAN, EMAN2 [8]
  • RELION, FREALIGN [8]
  • SPIDER, IHRSR [8]
  • SPIDER, PACKAGE [8]
  • EMAN, EMAN2, XMIPP [7]
  • EMAN, SPIDER [7]
  • IMIRS [7]
  • MRC, IMAGIC, SPIDER [7]
  • PFT2 AND EM3DR2 [7]
  • PFT2, EM3DR2, POR, P3DR [7]
  • SPIDER, IMAGIC [7]
  • CTFIND3 [6]
  • DYNAMO [6]
  • EMAN, FREALIGN [6]
  • EMAN1, EMAN2 [6]
  • EMAN2, AND, SPARX [6]
  • EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
  • ETOMO [6]
  • IMOD, PRIISM/IVE [6]
  • MANUAL [6]
  • NOVACTF [6]
  • PEET [6]
  • XMIPP, ML, TOMO [6]
  • CHIMERA, CNS [5]
  • COOT, SPDBV, REFMAC5 [5]
  • CTFFIND4 [5]
  • EMAN1.8 [5]
  • EMAN2, RELION1.2 [5]
  • EMAN2, SPIDER, XMIPP [5]
  • EMAN2/SPARX [5]
  • EMPFT, POR, P3DR [5]
  • FREALIX [5]
  • IMAGIC V [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • MPSA [5]
  • PFT [5]
  • SPIDER, EMAN2 [5]
  • SPIDER, IMAGIC, GAP, CNS, XPLOR [5]

Microscope

  • FEI TITAN KRIOS [445]
  • FEI TECNAI F20 [399]
  • FEI POLARA 300 [205]
  • FEI/PHILIPS CM200FEG [153]
  • FEI TECNAI F30 [100]
  • FEI TECNAI 12 [81]
  • FEI TECNAI 20 [79]
  • FEI/PHILIPS CM300FEG/T [64]
  • JEOL 2010F [63]
  • JEOL 2200FS [61]
  • JEOL 3200FSC [42]
  • JEOL 1230 [34]
  • FEI TALOS ARCTICA [32]
  • FEI TECNAI SPIRIT [32]
  • FEI/PHILIPS EM420 [32]
  • FEI/PHILIPS CM120T [29]
  • FEI/PHILIPS CM200T [24]
  • JEOL 4000EX [24]
  • FEI/PHILIPS CM200FEG/ST [22]
  • JEOL 2100F [22]
  • JEOL 1200EXII [18]
  • JEOL 3000SFF [17]
  • JEOL 4000 [17]
  • JEOL 3200FS [16]
  • JEOL KYOTO-3000SFF [16]
  • FEI TITAN [15]
  • ZEISS LIBRA120PLUS [14]
  • JEOL 1200EX [9]
  • FEI/PHILIPS CM200FEG/UT [7]
  • FEI TECNAI 10 [6]
  • FEI TECNAI ARCTICA [6]
  • JEOL 2000EX [6]
  • JEOL 2100 [6]
  • JEOL 2200FSC [5]
  • FEI/PHILIPS CM12 [4]
  • FEI/PHILIPS CM300FEG/ST [4]
  • OTHER [4]
  • JEOL 100CX [3]
  • JEOL CRYO ARM 200 [3]
  • TFS GLACIOS [3]
  • FEI/PHILIPS CM300FEG/HE [2]
  • FEI/PHILIPS EM400 [2]
  • JEOL 1200 [2]
  • JEOL 1400 [2]
  • JEOL 2010HT [2]
  • JEOL 2010UHR [2]
  • JEOL CRYO ARM 300 [2]
  • TFS KRIOS [2]
  • TFS TALOS F200C [2]
  • FEI/PHILIPS CM200FEG/SOPHIE [1]
  • HITACHI EF2000 [1]
  • HITACHI H-9500SD [1]
  • HITACHI H7600 [1]
  • JEOL 2000EXII [1]
  • JEOL 2010 [1]
  • JEOL 2010HC [1]
  • TFS TALOS L120C [1]
  • ZEISS LEO912 [1]

Electron Source

  • FIELD EMISSION GUN [1760]
  • LAB6 [268]
  • TUNGSTEN HAIRPIN [108]
  • OTHER [9]

Film or detector model

  • KODAK SO-163 FILM [946]
  • GATAN K2 SUMMIT 4K X 4K [214]
  • GATAN ULTRASCAN 4000 4K X 4K [184]
  • FEI FALCON II 4K X 4K [85]
  • GATAN K2 4K X 4K [61]
  • OTHER [58]
  • TVIPS TEMCAM-F416 4K X 4K [56]
  • FEI EAGLE 4K X 4K [55]
  • GATAN K3 6K X 4K [47]
  • FEI FALCON III 4K X 4K [44]
  • GENERIC CCD [36]
  • GENERIC GATAN 4K X 4K [36]
  • GATAN K2 QUANTUM 4K X 4K [28]
  • TVIPS TEMCAM-F415 4K X 4K [27]
  • DIRECT ELECTRON DE-20 5K X 3K [24]
  • FEI FALCON I 4K X 4K [23]
  • FEI CETA 4K X 4K [20]
  • GENERIC GATAN [17]
  • DIRECT ELECTRON DE-12 4K X 3K [12]
  • FEI EAGLE 2K X 2K [12]
  • GENERIC TVIPS 4K X 4K [11]
  • KODAK 4489 FILM [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [10]
  • GATAN ULTRASCAN 1000 2K X 2K [7]
  • GENERIC FILM [7]
  • AGFA SCIENTA FILM [6]
  • TVIPS TEMCAM-F816 8K X 8K [6]
  • DIRECT ELECTRON DE-64 8K X 8K [5]
  • GATAN ULTRASCAN 10000 10K X 10K [3]
  • GENERIC TVIPS [3]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • GENERIC GATAN 2K X 2K [2]
  • GENERIC IMAGE PLATES [2]
  • DIRECT ELECTRON DE-10 5K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN MULTISCAN [1]
  • GATAN ORIUS SC200 2K X 2K [1]
  • PROSCAN TEM-PIV 2K X 2K [1]

External links

  • PDB [16]
  • AlphaFold DB [5]
  • PDBe-Kb [5]
  • UniProt [5]
  • Gene Ontology [1]