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sample_name:"Urease"

Filter By

Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Complex [15]
  • Protein [8]
  • Ligand [6]
  • Cellular component [2]

Organism

  • Canavalia ensiformis [8]
  • Sporosarcina pasteurii [2]
  • Helicobacter pylori [2]
  • Ureaplasma parvum [1]
  • Klebsiella pneumoniae [1]
  • Yersinia enterocolitica [1]
  • Helicobacter pylori [1]
  • Yersinia enterocolitica [1]

EM Method

  • Single-particle [17]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [10]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [1]
  • 1-2 MDa [4]

Release Date

  • 2025 [3]
  • 2024 [3]
  • 2023 [2]
  • 2021 [4]
  • 2020 [5]

Author by name

  • Feathers JR [5]
  • Fromme JC [5]
  • Spoth KA [5]
  • Burton-smith RN [3]
  • Murata K [3]
  • Caesar J [2]
  • Chen X [2]
  • Choi T [2]
  • Cianci M [2]
  • Ciurli S [2]
  • Cunha E [2]
  • Cunha ES [2]
  • Deme J [2]
  • Fong IYH [2]
  • Johnson S [2]
  • Lea SM [2]
  • Luecke H [2]
  • Mazzei L [2]
  • Mills DJ [2]
  • Ng TLC [2]
  • Nim YS [2]
  • Pang LTH [2]
  • Sanz-gaitero M [2]
  • Tria G [2]
  • Tsang KL [2]
  • Wong KB [2]
  • Wong YYH [2]
  • Yuen NMH [2]
  • Adaixo R [1]
  • Anton L [1]
  • Carroni M [1]
  • Ekimoto T [1]
  • Fujita J [1]
  • Fukuda Y [1]
  • Harada K [1]
  • Ikeguchi M [1]
  • Inoue M [1]
  • Inoue T [1]
  • Jakob RP [1]
  • Mahi MA [1]
  • Maier T [1]
  • Morado DR [1]
  • Nakura Y [1]
  • Namba K [1]
  • Righetto RD [1]
  • Ringler P [1]
  • Schwede T [1]
  • Sharov G [1]
  • Stahlberg H [1]
  • Suzuki K [1]
  • Wu HN [1]
  • Yanagihara I [1]
  • Yin B [1]
  • Zivanov J [1]
  • De La Rosa-Trevin Jm [1]

Author by ORCID

  • Feathers JR [5]
  • Fromme JC [5]
  • Murata K [3]
  • Burton-smith RN [3]
  • Tsang KL [2]
  • Deme J [2]
  • Nim YS [2]
  • Lea SM [2]
  • Ciurli S [2]
  • Chen X [2]
  • Yuen NMH [2]
  • Luecke H [2]
  • Wong KB [2]
  • Johnson S [2]
  • Sanz-gaitero M [2]
  • Pang LTH [2]
  • Mills DJ [2]
  • Mazzei L [2]
  • Cunha ES [2]
  • Ng TLC [2]
  • Wong YYH [2]
  • Choi T [2]
  • Stahlberg H [1]
  • Jakob RP [1]
  • Sharov G [1]
  • Fukuda Y [1]
  • Maier T [1]
  • Carroni M [1]
  • Harada K [1]
  • Anton L [1]
  • Schwede T [1]
  • Righetto RD [1]
  • Morado DR [1]

Journal

  • J STRUCT BIOL X [5]
  • NAT COMMUN [3]
  • TO BE PUBLISHED [3]
  • INT J BIOL MACROMOL [2]
  • SCI ADV [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • J MOL BIOL [1]

Software

  • RELION [8]
  • CRYOSPARC [1]
  • CTFFIND [1]

Microscope

  • FEI TECNAI ARCTICA [8]
  • FEI TITAN KRIOS [6]
  • JEOL CRYO ARM 300 [1]
  • TFS GLACIOS [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [17]

Film or detector model

  • GATAN K3 6K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [6]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

External links

  • PDB [9]
  • AlphaFold DB [8]
  • UniProt [8]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Gene Ontology [6]
  • Pfam [6]
  • EMPIAR [5]
  • PDBe-Kb [5]
  • InterPro [3]
Sort by: Download
Showing 1 - 10 of 17. Page 1 of 2
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Preview first 10
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EMD-60854
Download Map
3D View
Cryo-EM structure of urease from Ureaplasma parvum
Release date: Aug. 20, 2025
Resolution: 2.03 Å
EM Method: Single-particle
Fitted PDBs: 9it2

Wu HN, Fujita J, Nakura Y, Inoue M, Suzuki K, Ekimoto T, Yin B, Fukuda Y, Harada K, Inoue T, Ikeguchi M, Namba K, Yanagihara I

J Mol Biol (2025) 437 pp. 169368-169368 [ Pubmed: 40752870 DOI: doi:10.1016/j.jmb.2025.169368 ]

EMD-51450
Download Map
3D View
Cryo-EM structure of Sporosarcina pasteurii urease
Release date: July 23, 2025
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 9gml
Q-score: 0.455

Mazzei L, Tria G, Ciurli S, Cianci M

Int J Biol Macromol (2024) 283 pp. 137904-137904 [ Pubmed: 39571870 DOI: doi:10.1016/j.ijbiomac.2024.137904 ]

EMD-51478
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3D View
Cryo-EM structure of Sporosarcina pasteurii urease inhibited by NBPTO
Release date: July 23, 2025
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 9gnr
Q-score: 0.574

Mazzei L, Tria G, Ciurli S, Cianci M

Int J Biol Macromol (2024) 283 pp. 137904-137904 [ Pubmed: 39571870 DOI: doi:10.1016/j.ijbiomac.2024.137904 ]

EMD-37185
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3D View
Jackbean Urease Fourier cropped K3 super resolution then PASR pre-processed Original data: EMPIAR-10549
Release date: Jan. 17, 2024
Resolution: 3.19 Å
EM Method: Single-particle

Burton-Smith RN, Murata K

To Be Published

EMD-37186
Download Map
3D View
Jackbean Urease Reprocessing of EMPIAR-10549 for comparison to PASR processing
Release date: Jan. 17, 2024
Resolution: 3.07 Å
EM Method: Single-particle

Burton-Smith RN, Murata K

To Be Published

EMD-37187
Download Map
3D View
Jackbean Urease Fourier cropped K3 super resolution movies Based on EMPIAR-10549
Release date: Jan. 17, 2024
Resolution: 4.2 Å
EM Method: Single-particle

Burton-Smith RN, Murata K

To Be Published

EMD-34648
Download Map
3D View
CryoEM structure of Helicobacter pylori UreFD/urease complex
Release date: May 3, 2023
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8hc1
Q-score: 0.607

Nim YS, Fong IYH, Deme J, Tsang KL, Caesar J, Johnson S, Pang LTH, Yuen NMH, Ng TLC, Choi T, Wong YYH, Lea SM, Wong KB

Sci Adv (2023) 9 pp. eadf7790-eadf7790 [ DOI: doi:10.1126/sciadv.adf7790 Pubmed: 37083535 ]

EMD-34659
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3D View
CryoEM Structure of Klebsiella pneumoniae UreD/urease complex
Release date: May 3, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8hcn
Q-score: 0.576

Nim YS, Fong IYH, Deme J, Tsang KL, Caesar J, Johnson S, Pang LTH, Yuen NMH, Ng TLC, Choi T, Wong YYH, Lea SM, Wong KB

Sci Adv (2023) 9 pp. eadf7790-eadf7790 [ DOI: doi:10.1126/sciadv.adf7790 Pubmed: 37083535 ]

EMD-23573
Download Map
3D View
Raw data
EMPIAR-10655
The cryo-EM structure of Jack bean urease at 63,000 nominal magnification
Release date: March 24, 2021
Resolution: 2.86 Å
EM Method: Single-particle

Feathers JR, Spoth KA, Fromme JC

J Struct Biol X (2021) 5 pp. 100047-100047 [ Pubmed: 33817625 DOI: doi:10.1016/j.yjsbx.2021.100047 ]

EMD-23604
Download Map
3D View
Raw data
EMPIAR-10656
Jack bean urease at 79,000 nominal magnification
Release date: March 24, 2021
Resolution: 2.86 Å
EM Method: Single-particle

Feathers JR, Spoth KA, Fromme JC

J Struct Biol X (2021) 5 pp. 100047-100047 [ Pubmed: 33817625 DOI: doi:10.1016/j.yjsbx.2021.100047 ]

Sort by: Download
Showing 1 - 10 of 17. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Complex [15]
  • Protein [8]
  • Ligand [6]
  • Cellular component [2]

Organism

  • Canavalia ensiformis [8]
  • Sporosarcina pasteurii [2]
  • Helicobacter pylori [2]
  • Ureaplasma parvum [1]
  • Klebsiella pneumoniae [1]
  • Yersinia enterocolitica [1]
  • Helicobacter pylori [1]
  • Yersinia enterocolitica [1]

EM Method

  • Single-particle [17]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [10]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [1]
  • 1-2 MDa [4]

Release Date

  • 2025 [3]
  • 2024 [3]
  • 2023 [2]
  • 2021 [4]
  • 2020 [5]

Author by name

  • Feathers JR [5]
  • Fromme JC [5]
  • Spoth KA [5]
  • Burton-smith RN [3]
  • Murata K [3]
  • Caesar J [2]
  • Chen X [2]
  • Choi T [2]
  • Cianci M [2]
  • Ciurli S [2]
  • Cunha E [2]
  • Cunha ES [2]
  • Deme J [2]
  • Fong IYH [2]
  • Johnson S [2]
  • Lea SM [2]
  • Luecke H [2]
  • Mazzei L [2]
  • Mills DJ [2]
  • Ng TLC [2]
  • Nim YS [2]
  • Pang LTH [2]
  • Sanz-gaitero M [2]
  • Tria G [2]
  • Tsang KL [2]
  • Wong KB [2]
  • Wong YYH [2]
  • Yuen NMH [2]
  • Adaixo R [1]
  • Anton L [1]
  • Carroni M [1]
  • Ekimoto T [1]
  • Fujita J [1]
  • Fukuda Y [1]
  • Harada K [1]
  • Ikeguchi M [1]
  • Inoue M [1]
  • Inoue T [1]
  • Jakob RP [1]
  • Mahi MA [1]
  • Maier T [1]
  • Morado DR [1]
  • Nakura Y [1]
  • Namba K [1]
  • Righetto RD [1]
  • Ringler P [1]
  • Schwede T [1]
  • Sharov G [1]
  • Stahlberg H [1]
  • Suzuki K [1]
  • Wu HN [1]
  • Yanagihara I [1]
  • Yin B [1]
  • Zivanov J [1]
  • De La Rosa-Trevin Jm [1]

Author by ORCID

  • Feathers JR [5]
  • Fromme JC [5]
  • Murata K [3]
  • Burton-smith RN [3]
  • Tsang KL [2]
  • Deme J [2]
  • Nim YS [2]
  • Lea SM [2]
  • Ciurli S [2]
  • Chen X [2]
  • Yuen NMH [2]
  • Luecke H [2]
  • Wong KB [2]
  • Johnson S [2]
  • Sanz-gaitero M [2]
  • Pang LTH [2]
  • Mills DJ [2]
  • Mazzei L [2]
  • Cunha ES [2]
  • Ng TLC [2]
  • Wong YYH [2]
  • Choi T [2]
  • Stahlberg H [1]
  • Jakob RP [1]
  • Sharov G [1]
  • Fukuda Y [1]
  • Maier T [1]
  • Carroni M [1]
  • Harada K [1]
  • Anton L [1]
  • Schwede T [1]
  • Righetto RD [1]
  • Morado DR [1]

Journal

  • J STRUCT BIOL X [5]
  • NAT COMMUN [3]
  • TO BE PUBLISHED [3]
  • INT J BIOL MACROMOL [2]
  • SCI ADV [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • J MOL BIOL [1]

Software

  • RELION [8]
  • CRYOSPARC [1]
  • CTFFIND [1]

Microscope

  • FEI TECNAI ARCTICA [8]
  • FEI TITAN KRIOS [6]
  • JEOL CRYO ARM 300 [1]
  • TFS GLACIOS [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [17]

Film or detector model

  • GATAN K3 6K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [6]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

External links

  • PDB [9]
  • AlphaFold DB [8]
  • UniProt [8]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Gene Ontology [6]
  • Pfam [6]
  • EMPIAR [5]
  • PDBe-Kb [5]
  • InterPro [3]