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sample_name:"Small subunit processome"

Filter By

Current Database

  • EMDB [38]

Current status

  • REL [38]

Sample type

  • Complex [38]
  • Protein [32]
  • RNA [32]
  • Ligand [26]
  • DNA [1]

Organism

  • Saccharomyces cerevisiae [17]
  • Saccharomyces cerevisiae [10]
  • Chlamydomonas reinhardtii [6]
  • Chaetomium thermophilum [5]
  • Homo sapiens [3]
  • Chaetomium thermophilum [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [32]
  • Subtomogram averaging [5]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [9]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [4]
  • ≥ 30Å [1]

Model molecular weight

  • 1-2 MDa [2]
  • 2-5 MDa [25]
  • 5-10 MDa [5]

Release Date

  • 2025 [8]
  • 2022 [1]
  • 2021 [10]
  • 2020 [8]
  • 2019 [6]
  • 2017 [4]
  • 2016 [1]

Author by name

  • Beckmann R [14]
  • Berninghausen O [14]
  • Hurt E [14]
  • Lau B [13]
  • Cheng J [11]
  • Klinge S [10]
  • Fischer P [9]
  • Kellner N [7]
  • Ye K [7]
  • An W [6]
  • Bassler J [6]
  • Baumeister W [6]
  • Beck F [6]
  • Erdmann PS [6]
  • Griesel S [6]
  • Hou Z [6]
  • Kallas M [6]
  • Khavnekar S [6]
  • Klumpe S [6]
  • Kunze R [6]
  • Plitzko JM [6]
  • Strauss D [6]
  • Wilfling F [6]
  • Buzovetsky O [5]
  • Chaker-margot M [5]
  • Du Y [5]
  • Qi J [5]
  • Sun Q [5]
  • Zhu X [5]
  • Flemming D [4]
  • La Venuta G [4]
  • Ameismeier M [3]
  • Denk T [3]
  • Kuvshinova M [3]
  • Miller L [3]
  • Singh S [3]
  • Thoms M [3]
  • Vanden Broeck A [3]
  • Barandun J [2]
  • Chen J [2]
  • Chen R [2]
  • Chen X [2]
  • Dong MQ [2]
  • Hunziker M [2]
  • Lan P [2]
  • Tan D [2]
  • Wang B [2]
  • Zhang C [2]
  • Zhang W [2]
  • Zheng S [2]
  • Chait BT [1]
  • He H [1]
  • Li H [1]
  • Molloy KR [1]
  • Qi S [1]
  • Rai J [1]
  • Xu C [1]
  • Zhang J [1]
  • Zhao Y [1]

Author by ORCID

  • Lau B [13]
  • Klinge S [9]
  • Beckmann R [7]
  • Kellner N [7]
  • Hou Z [6]
  • Baumeister W [6]
  • Erdmann PS [6]
  • Hurt E [6]
  • Plitzko JM [6]
  • Wilfling F [6]
  • Klumpe S [6]
  • Berninghausen O [6]
  • Khavnekar S [6]
  • Ye K [5]
  • Zhu X [5]
  • Flemming D [4]
  • Chaker-margot M [4]
  • Cheng J [4]
  • Singh S [3]
  • Miller L [3]
  • La Venuta G [3]
  • Qi J [3]
  • Denk T [3]
  • Ameismeier M [3]
  • An W [3]
  • Du Y [3]
  • Vanden Broeck A [3]
  • Hunziker M [2]
  • Dong MQ [2]
  • Wang B [2]
  • Barandun J [2]
  • Zhao Y [1]
  • Li H [1]
  • Chait BT [1]

Journal

  • SCIENCE [10]
  • NAT COMMUN [9]
  • MOL CELL [7]
  • NATURE [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • ELIFE [2]
  • NAT STRUCT MOL BIOL [2]
  • TO BE PUBLISHED [2]
  • COMMUN BIOL [1]

Software

  • RELION [25]
  • CTFFIND [7]
  • CTFFIND4 [2]
  • PHENIX [2]

Microscope

  • FEI TITAN KRIOS [32]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [38]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [20]
  • GATAN K3 6K X 4K [8]
  • FEI FALCON II 4K X 4K [7]
  • OTHER [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [32]
  • Gene Ontology [32]
  • PDB [32]
  • PDBe-Kb [32]
  • Pfam [32]
  • UniProt [32]
  • InterPro [27]
  • ChEBI [26]
  • ChEMBL [26]
  • DrugBank [26]
  • SCOP2 [7]
  • EMPIAR [2]
Sort by: Download
Showing 1 - 10 of 38. Page 1 of 4
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EMD-49075
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SSU processome maturation and disassembly, State A
Release date: Nov. 5, 2025
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 9n6v
Q-score: 0.431

Buzovetsky O, Klinge S

Nature (2025) 648 pp. 746-754 [ DOI: doi:10.1038/s41586-025-09688-3 Pubmed: 41162712 ]

EMD-49076
Composite map
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SSU processome maturation and disassembly, State A
Release date: Nov. 5, 2025
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9n6w
Q-score: 0.47

Buzovetsky O, Klinge S

Nature (2025) 648 pp. 746-754 [ DOI: doi:10.1038/s41586-025-09688-3 Pubmed: 41162712 ]

EMD-49077
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SSU processome maturation and disassembly, State B
Release date: Nov. 5, 2025
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 9n6x
Q-score: 0.39

Buzovetsky O, Klinge S

Nature (2025) 648 pp. 746-754 [ DOI: doi:10.1038/s41586-025-09688-3 Pubmed: 41162712 ]

EMD-49078
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SSU processome maturation and disassembly, State C
Release date: Nov. 5, 2025
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9n6y
Q-score: 0.401

Buzovetsky O, Klinge S

Nature (2025) 648 pp. 746-754 [ DOI: doi:10.1038/s41586-025-09688-3 Pubmed: 41162712 ]

EMD-49079
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SSU processome maturation and disassembly, State D
Release date: Nov. 5, 2025
Resolution: 4.74 Å
EM Method: Single-particle
Fitted PDBs: 9n6z
Q-score: 0.242

Buzovetsky O, Klinge S

Nature (2025) 648 pp. 746-754 [ DOI: doi:10.1038/s41586-025-09688-3 Pubmed: 41162712 ]

EMD-50964
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snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3
Release date: June 18, 2025
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9g25
Q-score: 0.554

Fischer P, Thoms M, Lau B, Denk T, Kuvshinova M, Berninghausen O, Flemming D, Hurt E, Beckmann R

Nat Commun (2025) 16 pp. 4720-4720 [ Pubmed: 40399280 DOI: doi:10.1038/s41467-025-59656-8 ]

EMD-50968
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3D View
snR30 snoRNP - State 2 - Utp23-Krr1-deltaC3
Release date: June 18, 2025
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 9g28
Q-score: 0.46

Fischer P, Thoms M, Lau B, Denk T, Kuvshinova M, Berninghausen O, Flemming D, Hurt E, Beckmann R

Nat Commun (2025) 16 pp. 4720-4720 [ Pubmed: 40399280 DOI: doi:10.1038/s41467-025-59656-8 ]

EMD-50991
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3D View
Stalled 90S - Utp23-Krr1-deltaC3
Release date: June 18, 2025
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9g33
Q-score: 0.485

Fischer P, Thoms M, Lau B, Denk T, Kuvshinova M, Berninghausen O, Flemming D, Hurt E, Beckmann R

Nat Commun (2025) 16 pp. 4720-4720 [ Pubmed: 40399280 DOI: doi:10.1038/s41467-025-59656-8 ]

EMD-25441
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Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells
Release date: July 6, 2022
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 7suk
Q-score: 0.314

Zhao Y, Rai J, Xu C, He H, Li H

Commun Biol (2022) 5 pp. 523-523 [ Pubmed: 35650250 DOI: doi:10.1038/s42003-022-03500-y ]

EMD-30584
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3D View
Cryo-EM structure of 90S preribosome with inactive Utp24 state A2
Release date: Oct. 6, 2021
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7d5s
Q-score: 0.181

Ye K

To Be Published

Sort by: Download
Showing 1 - 10 of 38. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [38]

Current status

  • REL [38]

Sample type

  • Complex [38]
  • Protein [32]
  • RNA [32]
  • Ligand [26]
  • DNA [1]

Organism

  • Saccharomyces cerevisiae [17]
  • Saccharomyces cerevisiae [10]
  • Chlamydomonas reinhardtii [6]
  • Chaetomium thermophilum [5]
  • Homo sapiens [3]
  • Chaetomium thermophilum [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [32]
  • Subtomogram averaging [5]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [9]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [4]
  • ≥ 30Å [1]

Model molecular weight

  • 1-2 MDa [2]
  • 2-5 MDa [25]
  • 5-10 MDa [5]

Release Date

  • 2025 [8]
  • 2022 [1]
  • 2021 [10]
  • 2020 [8]
  • 2019 [6]
  • 2017 [4]
  • 2016 [1]

Author by name

  • Beckmann R [14]
  • Berninghausen O [14]
  • Hurt E [14]
  • Lau B [13]
  • Cheng J [11]
  • Klinge S [10]
  • Fischer P [9]
  • Kellner N [7]
  • Ye K [7]
  • An W [6]
  • Bassler J [6]
  • Baumeister W [6]
  • Beck F [6]
  • Erdmann PS [6]
  • Griesel S [6]
  • Hou Z [6]
  • Kallas M [6]
  • Khavnekar S [6]
  • Klumpe S [6]
  • Kunze R [6]
  • Plitzko JM [6]
  • Strauss D [6]
  • Wilfling F [6]
  • Buzovetsky O [5]
  • Chaker-margot M [5]
  • Du Y [5]
  • Qi J [5]
  • Sun Q [5]
  • Zhu X [5]
  • Flemming D [4]
  • La Venuta G [4]
  • Ameismeier M [3]
  • Denk T [3]
  • Kuvshinova M [3]
  • Miller L [3]
  • Singh S [3]
  • Thoms M [3]
  • Vanden Broeck A [3]
  • Barandun J [2]
  • Chen J [2]
  • Chen R [2]
  • Chen X [2]
  • Dong MQ [2]
  • Hunziker M [2]
  • Lan P [2]
  • Tan D [2]
  • Wang B [2]
  • Zhang C [2]
  • Zhang W [2]
  • Zheng S [2]
  • Chait BT [1]
  • He H [1]
  • Li H [1]
  • Molloy KR [1]
  • Qi S [1]
  • Rai J [1]
  • Xu C [1]
  • Zhang J [1]
  • Zhao Y [1]

Author by ORCID

  • Lau B [13]
  • Klinge S [9]
  • Beckmann R [7]
  • Kellner N [7]
  • Hou Z [6]
  • Baumeister W [6]
  • Erdmann PS [6]
  • Hurt E [6]
  • Plitzko JM [6]
  • Wilfling F [6]
  • Klumpe S [6]
  • Berninghausen O [6]
  • Khavnekar S [6]
  • Ye K [5]
  • Zhu X [5]
  • Flemming D [4]
  • Chaker-margot M [4]
  • Cheng J [4]
  • Singh S [3]
  • Miller L [3]
  • La Venuta G [3]
  • Qi J [3]
  • Denk T [3]
  • Ameismeier M [3]
  • An W [3]
  • Du Y [3]
  • Vanden Broeck A [3]
  • Hunziker M [2]
  • Dong MQ [2]
  • Wang B [2]
  • Barandun J [2]
  • Zhao Y [1]
  • Li H [1]
  • Chait BT [1]

Journal

  • SCIENCE [10]
  • NAT COMMUN [9]
  • MOL CELL [7]
  • NATURE [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • ELIFE [2]
  • NAT STRUCT MOL BIOL [2]
  • TO BE PUBLISHED [2]
  • COMMUN BIOL [1]

Software

  • RELION [25]
  • CTFFIND [7]
  • CTFFIND4 [2]
  • PHENIX [2]

Microscope

  • FEI TITAN KRIOS [32]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [38]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [20]
  • GATAN K3 6K X 4K [8]
  • FEI FALCON II 4K X 4K [7]
  • OTHER [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [32]
  • Gene Ontology [32]
  • PDB [32]
  • PDBe-Kb [32]
  • Pfam [32]
  • UniProt [32]
  • InterPro [27]
  • ChEBI [26]
  • ChEMBL [26]
  • DrugBank [26]
  • SCOP2 [7]
  • EMPIAR [2]