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sample_name:"RNAP-TopoI complex on duplex scaffold"

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • DNA [2]
  • Protein [2]
  • RNA [2]
  • Ligand [1]

Organism

  • Escherichia coli [11]
  • Synthetic construct [2]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 500-1000 kDa [1]

Release Date

  • 2025 [11]

Author by name

  • Batisse C [11]
  • Borde C [11]
  • Bruno L [11]
  • Espeli O [11]
  • Lamour V [11]
  • Miropolskaya N [11]
  • Saint-andre C [11]
  • Takacs M [11]
  • Vidmar V [11]
  • Weixlbaumer A [11]
  • Zhu C [11]

Author by ORCID

  • Lamour V [11]
  • Weixlbaumer A [11]
  • Vidmar V [11]
  • Saint-andre C [11]
  • Espeli O [11]
  • Borde C [11]
  • Bruno L [11]

Journal

  • NAT STRUCT MOL BIOL [11]

Software

  • CRYOSPARC [11]

Microscope

  • TFS KRIOS [11]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 6K X 4K [11]

External links

  • AlphaFold DB [2]
  • Complex Portal [2]
  • PDBe-Kb [2]
  • UniProt [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • PDB [1]
  • Pfam [1]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-51252
Download Map
3D View
RNAP-TopoI complex on duplex scaffold - consensus map
Release date: Nov. 5, 2025
Resolution: 2.7 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51253
Download Map
3D View
RNAP-TopoI complex on duplex scaffold - focused map TopoI
Release date: Nov. 5, 2025
Resolution: 3.3 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51254
Download Map
3D View
RNAP-TopoI complex on duplex scaffold - focused map TopoI D2/D3
Release date: Nov. 5, 2025
Resolution: 3.4 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51255
Download Map
3D View
RNAP-TopoI complex on duplex scaffold - focused map RNAP core
Release date: Nov. 5, 2025
Resolution: 2.6 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51256
Download Map
3D View
RNAP-TopoI complex on duplex scaffold - focused map RNAP swivel module 1
Release date: Nov. 5, 2025
Resolution: 2.7 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51257
Download Map
3D View
RNAP-TopoI complex on duplex scaffold - focused map RNAP swivel module 2
Release date: Nov. 5, 2025
Resolution: 2.7 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51258
Download Map
3D View
RNAP-TopoI complex on duplex scaffold - focused map RNAP beta protrusion and lobe
Release date: Nov. 5, 2025
Resolution: 2.8 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51259
Composite map
Download Map
3D View
RNAP-TopoI complex on duplex scaffold
Release date: Nov. 5, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9gda
Q-score: 0.487

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51265
Download Map
3D View
RNAP-TopoI complex on duplex scaffold with visible TOPRIM loop - consensus map
Release date: Nov. 5, 2025
Resolution: 2.8 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

EMD-51266
Download Map
3D View
RNAP-TopoI complex on duplex scaffold with visible TOPRIM loop - focused map TopoI
Release date: Nov. 5, 2025
Resolution: 3.8 Å
EM Method: Single-particle

Vidmar V, Borde C, Bruno L, Miropolskaya N, Takacs M, Batisse C, Saint-Andre C, Zhu C, Espeli O, Lamour V, Weixlbaumer A

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01703-5 Pubmed: 41326756 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • DNA [2]
  • Protein [2]
  • RNA [2]
  • Ligand [1]

Organism

  • Escherichia coli [11]
  • Synthetic construct [2]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 500-1000 kDa [1]

Release Date

  • 2025 [11]

Author by name

  • Batisse C [11]
  • Borde C [11]
  • Bruno L [11]
  • Espeli O [11]
  • Lamour V [11]
  • Miropolskaya N [11]
  • Saint-andre C [11]
  • Takacs M [11]
  • Vidmar V [11]
  • Weixlbaumer A [11]
  • Zhu C [11]

Author by ORCID

  • Lamour V [11]
  • Weixlbaumer A [11]
  • Vidmar V [11]
  • Saint-andre C [11]
  • Espeli O [11]
  • Borde C [11]
  • Bruno L [11]

Journal

  • NAT STRUCT MOL BIOL [11]

Software

  • CRYOSPARC [11]

Microscope

  • TFS KRIOS [11]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 6K X 4K [11]

External links

  • AlphaFold DB [2]
  • Complex Portal [2]
  • PDBe-Kb [2]
  • UniProt [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • PDB [1]
  • Pfam [1]