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sample_name:"Pyrenoid"

Filter By

Current Database

  • EMDB [4]

Current status

  • REL [4]

Sample type

  • Complex [3]
  • Protein [3]
  • Cellular component [1]

Organism

  • Chlamydomonas reinhardtii [2]
  • Phaeodactylum tricornutum [1]
  • Thalassiosira pseudonana [1]

EM Method

  • Helical reconstruction [1]
  • Single-particle [1]
  • Subtomogram averaging [1]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 500-1000 kDa [1]

Release Date

  • 2025 [1]
  • 2024 [1]
  • 2023 [1]
  • 2021 [1]

Author by name

  • Engel BD [2]
  • Alireza R [1]
  • Ang WSL [1]
  • Bhushan S [1]
  • Cartwright HN [1]
  • Cuellar LK [1]
  • Demulder M [1]
  • Dumoux M [1]
  • Elad N [1]
  • Finazzi G [1]
  • Flori S [1]
  • Foerster F [1]
  • Forster F [1]
  • Freeman Rosenzweig Es [1]
  • Gallet B [1]
  • Gerle C [1]
  • Hou Z [1]
  • Jonikas MC [1]
  • Jouneau PH [1]
  • Juan R P [1]
  • Kawamoto A [1]
  • Kuhn Cuellar L [1]
  • Kurisu G [1]
  • Lai SK [1]
  • Lamm L [1]
  • Li HY [1]
  • Mackinder LCM [1]
  • Martinez-sanchez A [1]
  • Matsuda Y [1]
  • Matsui H [1]
  • Maud D [1]
  • Morishima N [1]
  • Mueller-cajar O [1]
  • Nadav E [1]
  • Nawaly H [1]
  • Oh ZG [1]
  • Okubo R [1]
  • Ota T [1]
  • Peijun P [1]
  • Perilla JR [1]
  • Plitzko JM [1]
  • Poh CW [1]
  • Ramezani A [1]
  • Righetto RD [1]
  • Ronceray P [1]
  • Schaffer M [1]
  • Shimakawa G [1]
  • Strauss M [1]
  • Sze SK [1]
  • Tanaka A [1]
  • Tohda R [1]
  • Tsuji Y [1]
  • Uwizeye C [1]
  • Wietrzynski W [1]
  • Wingreen NS [1]
  • Wunder T [1]
  • Xu B [1]
  • Zhang P [1]
  • Zhen H [1]

Author by ORCID

  • Engel BD [2]
  • Elad N [1]
  • Cartwright HN [1]
  • Hou Z [1]
  • Wingreen NS [1]
  • Schaffer M [1]
  • Strauss M [1]
  • Oh ZG [1]
  • Dumoux M [1]
  • Ang WSL [1]
  • Poh CW [1]
  • Martinez-sanchez A [1]
  • Demulder M [1]
  • Forster F [1]
  • Plitzko JM [1]
  • Kuhn Cuellar L [1]
  • Gerle C [1]
  • Kawamoto A [1]
  • Ronceray P [1]
  • Ramezani A [1]
  • Perilla JR [1]
  • Mackinder LCM [1]
  • Zhang P [1]
  • Mueller-cajar O [1]
  • Flori S [1]

Journal

  • CELL [2]
  • NAT COMMUN [1]
  • PNAS [1]

Software

  • RELION [3]
  • CTFFIND [1]
  • IMOD [1]

Microscope

  • FEI TITAN KRIOS [3]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • GATAN K3 6K X 4K [2]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • AlphaFold DB [2]
  • EMPIAR [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • UniProt [2]
  • Gene Ontology [1]
  • Pfam [1]
Sort by: Download
Showing 1 - 4 of 4. Page 1 of 1
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EMD-52438
Download Map
3D View
In-cell Structure of Pyrenoid Rubisco
Release date: March 5, 2025
Resolution: 8.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9hvm
Q-score: 0.114

Elad N, Hou Z, Dumoux M, Ramezani A, Perilla JR, Zhang P

Nat Commun (2025) 16 pp. 7763-7763 [ Pubmed: 40835820 DOI: doi:10.1038/s41467-025-62998-y ]

EMD-37751
Download Map
3D View
Raw data
EMPIAR-11724
Cryo-EM structure of T. pseudonana PyShell helical tube
Release date: Oct. 9, 2024
Resolution: 2.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 8wqp
Q-score: 0.64

Shimakawa G, Demulder M, Flori S, Kawamoto A, Tsuji Y, Nawaly H, Tanaka A, Tohda R, Ota T, Matsui H, Morishima N, Okubo R, Wietrzynski W, Lamm L, Righetto RD, Uwizeye C, Gallet B, Jouneau PH, Gerle C, Kurisu G, Finazzi G, Engel BD, Matsuda Y

Cell (2024) 187 pp. 5919- [ Pubmed: 39357521 DOI: doi:10.1016/j.cell.2024.09.013 ]

EMD-35159
Download Map
3D View
PYCO1 452-592 from Phaeodactylum tricornutum
Release date: June 21, 2023
Resolution: 2.6 Å
EM Method: Single-particle

Oh ZG, Ang WSL, Poh CW, Lai SK, Sze SK, Li HY, Bhushan S, Wunder T, Mueller-Cajar O

PNAS (2023) 120 pp. e2304833120-e2304833120 [ DOI: doi:10.1073/pnas.2304833120 Pubmed: 37311001 ]

EMD-12749
Download Map
3D View
Raw data
EMPIAR-10694
In situ cryo-electron tomogram of a pyrenoid inside a Chlamydomonas reinhardtii cell
Release date: May 19, 2021
EM Method: Tomography

Freeman Rosenzweig ES, Xu B, Kuhn Cuellar L, Martinez-Sanchez A, Schaffer M, Strauss M, Cartwright HN, Ronceray P, Plitzko JM, Forster F, Wingreen NS, Engel BD, Mackinder LCM, Jonikas MC

Cell (2017) 171 pp. 148-162.e19 [ DOI: doi:10.1016/j.cell.2017.08.008 Pubmed: 28938114 ]

Sort by: Download
Showing 1 - 4 of 4. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [4]

Current status

  • REL [4]

Sample type

  • Complex [3]
  • Protein [3]
  • Cellular component [1]

Organism

  • Chlamydomonas reinhardtii [2]
  • Phaeodactylum tricornutum [1]
  • Thalassiosira pseudonana [1]

EM Method

  • Helical reconstruction [1]
  • Single-particle [1]
  • Subtomogram averaging [1]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 500-1000 kDa [1]

Release Date

  • 2025 [1]
  • 2024 [1]
  • 2023 [1]
  • 2021 [1]

Author by name

  • Engel BD [2]
  • Alireza R [1]
  • Ang WSL [1]
  • Bhushan S [1]
  • Cartwright HN [1]
  • Cuellar LK [1]
  • Demulder M [1]
  • Dumoux M [1]
  • Elad N [1]
  • Finazzi G [1]
  • Flori S [1]
  • Foerster F [1]
  • Forster F [1]
  • Freeman Rosenzweig Es [1]
  • Gallet B [1]
  • Gerle C [1]
  • Hou Z [1]
  • Jonikas MC [1]
  • Jouneau PH [1]
  • Juan R P [1]
  • Kawamoto A [1]
  • Kuhn Cuellar L [1]
  • Kurisu G [1]
  • Lai SK [1]
  • Lamm L [1]
  • Li HY [1]
  • Mackinder LCM [1]
  • Martinez-sanchez A [1]
  • Matsuda Y [1]
  • Matsui H [1]
  • Maud D [1]
  • Morishima N [1]
  • Mueller-cajar O [1]
  • Nadav E [1]
  • Nawaly H [1]
  • Oh ZG [1]
  • Okubo R [1]
  • Ota T [1]
  • Peijun P [1]
  • Perilla JR [1]
  • Plitzko JM [1]
  • Poh CW [1]
  • Ramezani A [1]
  • Righetto RD [1]
  • Ronceray P [1]
  • Schaffer M [1]
  • Shimakawa G [1]
  • Strauss M [1]
  • Sze SK [1]
  • Tanaka A [1]
  • Tohda R [1]
  • Tsuji Y [1]
  • Uwizeye C [1]
  • Wietrzynski W [1]
  • Wingreen NS [1]
  • Wunder T [1]
  • Xu B [1]
  • Zhang P [1]
  • Zhen H [1]

Author by ORCID

  • Engel BD [2]
  • Elad N [1]
  • Cartwright HN [1]
  • Hou Z [1]
  • Wingreen NS [1]
  • Schaffer M [1]
  • Strauss M [1]
  • Oh ZG [1]
  • Dumoux M [1]
  • Ang WSL [1]
  • Poh CW [1]
  • Martinez-sanchez A [1]
  • Demulder M [1]
  • Forster F [1]
  • Plitzko JM [1]
  • Kuhn Cuellar L [1]
  • Gerle C [1]
  • Kawamoto A [1]
  • Ronceray P [1]
  • Ramezani A [1]
  • Perilla JR [1]
  • Mackinder LCM [1]
  • Zhang P [1]
  • Mueller-cajar O [1]
  • Flori S [1]

Journal

  • CELL [2]
  • NAT COMMUN [1]
  • PNAS [1]

Software

  • RELION [3]
  • CTFFIND [1]
  • IMOD [1]

Microscope

  • FEI TITAN KRIOS [3]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • GATAN K3 6K X 4K [2]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • AlphaFold DB [2]
  • EMPIAR [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • UniProt [2]
  • Gene Ontology [1]
  • Pfam [1]