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sample_name:"Photosystem II"

Filter By

Current Database

  • EMDB [90]

Current status

  • REL [90]

Sample type

  • Complex [78]
  • Protein [74]
  • Ligand [72]
  • Cell [10]
  • Sample [2]
  • Other [1]

Organism

  • Chlamydomonas reinhardtii [12]
  • Porphyridium purpureum [11]
  • Synechocystis sp. pcc 6803 [7]
  • Thermosynechococcus elongatus [7]
  • Dunaliella salina [6]
  • Thermosynechococcus vulcanus [6]
  • Spinacia oleracea [6]
  • Arabidopsis thaliana [6]
  • Chaetoceros gracilis [5]
  • Synechocystis sp. pcc 6803 [3]
  • Chroomonas placoidea [3]
  • Pisum sativum [3]
  • Rhodomonas salina [3]
  • Chlorella ohadii [2]
  • Acaryochloris marina [2]
  • Chrysotila roscoffensis [2]
  • Synechococcus sp. (strain atcc 29403 / pcc 7335) [2]
  • (no species) [1]
  • Arthrospira platensis [1]
  • Arthrospira sp. fachb-439 [1]
  • Rhodomonas sp. nies-2332 [1]
  • Picea abies [1]
  • Thalassiosira pseudonana [1]
  • Phaeodactylum tricornutum [1]

EM Method

  • Single-particle [82]
  • Tomography [5]
  • Subtomogram averaging [3]

Resolution

  • < 2Å [5]
  • ≥ 2Å and < 3Å [40]
  • ≥ 3Å and < 4Å [31]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 12Å and < 16Å [2]
  • ≥ 30Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [14]
  • 500-1000 kDa [20]
  • 1-2 MDa [27]
  • 2-5 MDa [6]
  • 5-10 MDa [1]
  • > 10 MDa [2]

Release Date

  • 2025 [23]
  • 2024 [13]
  • 2023 [11]
  • 2022 [14]
  • 2021 [14]
  • 2020 [2]
  • 2019 [8]
  • 2017 [3]
  • 2016 [1]
  • 2015 [1]

Author by name

  • Shen JR [20]
  • Sui SF [19]
  • Liu Z [17]
  • Li M [12]
  • Li X [11]
  • Akita F [10]
  • Han G [10]
  • Kato K [10]
  • Kuang T [10]
  • Ma J [10]
  • Wang W [10]
  • Zhang X [10]
  • Fadeeva M [9]
  • Nelson N [9]
  • Brudvig GW [8]
  • Li A [8]
  • Debus RJ [7]
  • Flesher DA [7]
  • Li MJ [7]
  • Li XM [7]
  • Ma JF [7]
  • Shan J [7]
  • You X [7]
  • Caspy I [6]
  • Gisriel CJ [6]
  • Miyazaki N [6]
  • Shen L [6]
  • Wang Y [6]
  • Xiao Y [6]
  • Liu H [5]
  • Mazor Y [5]
  • Nakajima Y [5]
  • Niedzwiedzki DM [5]
  • Nixon PJ [5]
  • Sazanov LA [5]
  • Su X [5]
  • Sun S [5]
  • Tomar RS [5]
  • Vercellino I [5]
  • Wang J [5]
  • Xiao YN [5]
  • Zhao Z [5]
  • Akimoto S [4]
  • Batista VS [4]
  • Cheng J [4]
  • Dohmae N [4]
  • Han GY [4]
  • Ifuku K [4]
  • Klaiman D [4]
  • Liu ZF [4]
  • Nagao R [4]
  • Suzuki T [4]
  • Wang C [4]
  • Yang KR [4]
  • Armstrong WH [3]
  • Arnolds O [3]
  • Bohn S [3]
  • Cao P [3]
  • Chan A [3]
  • Engel BD [3]
  • Gunner MR [3]
  • Hamaguchi T [3]
  • Huang G [3]
  • Kashino Y [3]
  • Kouril R [3]
  • Krieger-liszkay A [3]
  • La Rocca R [3]
  • Langer JD [3]
  • Li Z [3]
  • Liauw P [3]
  • Liu J [3]
  • Meier-credo J [3]
  • Minagawa J [3]
  • Moller M [3]
  • Murata K [3]
  • Nowaczyk MM [3]
  • Rudack T [3]
  • Schuller JM [3]
  • Schuller SK [3]
  • Shan JY [3]
  • Shen LL [3]
  • Si L [3]
  • Song C [3]
  • Stoll R [3]
  • Su XD [3]
  • Tajkhorshid E [3]
  • Tsai PC [3]
  • Uchiyama I [3]
  • Wang WD [3]
  • Watanabe A [3]
  • Yonekura K [3]
  • Zabret J [3]
  • Zhang S [3]
  • Zhu Q [3]
  • Amelii A [2]
  • Bassi R [2]
  • Bryant DA [2]
  • Caferri R [2]
  • Chang W [2]
  • Chen JH [2]

Author by ORCID

  • Shen JR [18]
  • Liu Z [15]
  • Sui SF [14]
  • Wang W [9]
  • Kuang T [8]
  • Ma J [8]
  • Han G [8]
  • Nelson N [8]
  • Flesher DA [7]
  • Xiao Y [6]
  • Kato K [6]
  • Gisriel CJ [6]
  • Caspy I [6]
  • Li M [6]
  • Wang Y [6]
  • Mazor Y [5]
  • Vercellino I [5]
  • Shan J [5]
  • Zhao Z [5]
  • Nakajima Y [5]
  • Sazanov LA [5]
  • Li M [5]
  • Niedzwiedzki DM [5]
  • Tomar RS [5]
  • Miyazaki N [5]
  • Liu H [5]
  • Nixon PJ [5]
  • Zhang X [4]
  • Li A [4]
  • Brudvig GW [4]
  • Akita F [4]
  • Shen L [4]
  • Debus RJ [4]
  • Fadeeva M [3]
  • Yonekura K [3]
  • Watanabe A [3]
  • Krieger-liszkay A [3]
  • Kouril R [3]
  • Nagao R [3]
  • Tajkhorshid E [3]
  • Huang G [3]
  • Armstrong WH [3]
  • Bohn S [3]
  • Murata K [3]
  • Suzuki T [3]
  • Engel BD [3]
  • Minagawa J [3]
  • Zabret J [3]
  • Zhang S [3]
  • Akimoto S [3]
  • Schuller JM [3]
  • You X [3]
  • Uchiyama I [3]
  • Nowaczyk MM [3]
  • Sun S [3]
  • Hamaguchi T [3]
  • Meier-credo J [3]
  • Arnolds O [3]
  • Liu J [3]
  • Rudack T [3]
  • Gao Y [2]
  • Sobotka R [2]
  • Su X [2]
  • Wang P [2]
  • Chen M [2]
  • Song C [2]
  • Pi X [2]
  • Wang HW [2]
  • Dall'osto L [2]
  • Schroder WP [2]
  • Tsai PC [2]
  • Batista VS [2]
  • Klaiman D [2]
  • Ma J [2]
  • Cheng J [2]
  • Bassi R [2]
  • Kopecny D [2]
  • Wang J [2]
  • Cao P [2]
  • Pang X [2]
  • Zhu D [2]
  • Knoppova J [2]
  • Wei X [2]
  • Zhang X [2]
  • La Rocca R [2]
  • Murray JW [2]
  • Qi R [2]
  • Caferri R [2]
  • Tian L [2]
  • You T [2]
  • Kim E [2]
  • Li X [2]
  • Chen JH [2]
  • Komenda J [2]
  • Amelii A [2]
  • Ma X [2]
  • Yang W [1]
  • Xu C [1]
  • Zhao S [1]
  • Hussein R [1]

Journal

  • NAT COMMUN [17]
  • NAT PLANTS [16]
  • ELIFE [11]
  • TO BE PUBLISHED [10]
  • SCI ADV [8]
  • J BIOL CHEM [5]
  • PNAS [5]
  • SCIENCE [4]
  • NATURE [3]
  • COMMUN BIOL [2]
  • FRONT PLANT SCI [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIOCHIM BIOPHYS ACTA BIOENERG [1]
  • CELL RES [1]
  • CELLS [1]
  • INT J MOL SCI [1]
  • J STRUCT BIOL [1]
  • JOULE [1]
  • SCI REP [1]

Software

  • RELION [25]
  • CTFFIND [8]
  • CRYOSPARC [5]
  • CHIMERA, COOT [1]
  • CISTEM [1]
  • EMAN [1]
  • EMAN, RELION [1]
  • EMAN2 [1]
  • PHENIX [1]

Microscope

  • FEI TITAN KRIOS [62]
  • TFS KRIOS [11]
  • FEI TALOS ARCTICA [5]
  • TFS GLACIOS [4]
  • FEI TITAN [3]
  • JEOL CRYO ARM 300 [3]
  • FEI TECNAI F20 [1]
  • JEOL 2200FS [1]

Electron Source

  • FIELD EMISSION GUN [90]

Film or detector model

  • GATAN K3 6K X 4K [31]
  • GATAN K2 SUMMIT 4K X 4K [23]
  • GATAN K3 BIOQUANTUM 6K X 4K [16]
  • FEI FALCON III 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [5]
  • DIRECT ELECTRON DE-16 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • FEI FALCON II 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • OTHER [1]

External links

  • PDB [73]
  • ChEBI [72]
  • ChEMBL [72]
  • DrugBank [72]
  • AlphaFold DB [69]
  • UniProt [69]
  • Gene Ontology [68]
  • Pfam [68]
  • PDBe-Kb [67]
  • InterPro [58]
  • SCOP2 [13]
  • CATH [2]
  • EMPIAR [1]
Sort by: Download
Showing 1 - 10 of 90. Page 1 of 9
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EMD-52077
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3D View
Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Chlamydomonas reinhardtii
Release date: Nov. 26, 2025
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 9hei
Q-score: 0.51

Nelson N, Klaiman D, Fadeeva M, Kandiah E

To Be Published

EMD-62846
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3D View
cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332
Release date: Nov. 26, 2025
Resolution: 2.17 Å
EM Method: Single-particle
Fitted PDBs: 9l5v
Q-score: 0.504

Zhang W, Yonehara N, Ishii M, Jiang H, La Rocca R, Tsai PC, Li H, Kato K, Akita F, Shen JR

Front Plant Sci (2025) 16 pp. 1716939-1716939 [ Pubmed: 41393888 DOI: doi:10.3389/fpls.2025.1716939 ]

EMD-52056
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Cryo-EM structure of photosystem II C2S2M2L2 supercomplex from the green alga Chlorella ohadii
Release date: Nov. 12, 2025
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 9hd7
Q-score: 0.576

Arshad R, Skalidis I, Kopecny D, Brabencova S, Opatikova M, Ilik P, Pospisil P, Hamdi F, Zeljkovic SC, Kopecna M, Roudnicky P, Lazar D, Elias E, Croce R, Kastritis P, Kouril R

Nat Commun (2025) [ DOI: doi:10.1038/s41467-025-65861-2 ]

EMD-71652
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Structure of the D1-Val185Asn mutated photosystem II complex with slow O-O bond formation reveals changes in the Cl1 water channel
Release date: Oct. 22, 2025
Resolution: 1.99 Å
EM Method: Single-particle
Fitted PDBs: 9phw
Q-score: 0.711

Flesher DA, Debus RJ, Brudvig GW

PNAS (2025) 122 pp. e2522652122-e2522652122 [ DOI: doi:10.1073/pnas.2522652122 Pubmed: 41237214 ]

EMD-63017
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Coordinates of Cryo-EM structure of the Arabidopsis thaliana C4S4M4-type PSII supercomplex
Release date: Oct. 8, 2025
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9le7

Chen SJB, Wu C, Wu JH, Sui SF, Zhang LX

To Be Published

EMD-63018
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Coordinates of Cryo-EM structure of the Arabidopsis thaliana C2S2M2-type PSII supercomplex
Release date: Oct. 8, 2025
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9le8
Q-score: 0.436

Chen SJB, Wu C, Wu JH, Sui SF, Zhang LX

To Be Published

EMD-51482
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Universal PSII assembly intermediate
Release date: Sept. 17, 2025
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9gnw
Q-score: 0.569

Fadeeva M, Klaiman D, Nelson N

To Be Published

EMD-51100
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Inactive PSII dimer from native Peak4 PSII dimers
Release date: July 30, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9g6f
Q-score: 0.669

Zhao Z, Vercellino I, Nixon PJ, Sazanov LA

To Be Published

EMD-51101
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3D View
Semi-active PSII dimer from native Peak4 PSII dimers
Release date: July 30, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9g6g
Q-score: 0.669

Zhao Z, Vercellino I, Nixon PJ, Sazanov LA

To Be Published

EMD-51102
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3D View
active PSII dimer from native Peak4 PSII dimers
Release date: July 30, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9g6h
Q-score: 0.675

Zhao Z, Vercellino I, Nixon PJ, Sazanov LA

To Be Published

Sort by: Download
Showing 1 - 10 of 90. Page 1 of 9
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [90]

Current status

  • REL [90]

Sample type

  • Complex [78]
  • Protein [74]
  • Ligand [72]
  • Cell [10]
  • Sample [2]
  • Other [1]

Organism

  • Chlamydomonas reinhardtii [12]
  • Porphyridium purpureum [11]
  • Synechocystis sp. pcc 6803 [7]
  • Thermosynechococcus elongatus [7]
  • Dunaliella salina [6]
  • Thermosynechococcus vulcanus [6]
  • Spinacia oleracea [6]
  • Arabidopsis thaliana [6]
  • Chaetoceros gracilis [5]
  • Synechocystis sp. pcc 6803 [3]
  • Chroomonas placoidea [3]
  • Pisum sativum [3]
  • Rhodomonas salina [3]
  • Chlorella ohadii [2]
  • Acaryochloris marina [2]
  • Chrysotila roscoffensis [2]
  • Synechococcus sp. (strain atcc 29403 / pcc 7335) [2]
  • (no species) [1]
  • Arthrospira platensis [1]
  • Arthrospira sp. fachb-439 [1]
  • Rhodomonas sp. nies-2332 [1]
  • Picea abies [1]
  • Thalassiosira pseudonana [1]
  • Phaeodactylum tricornutum [1]

EM Method

  • Single-particle [82]
  • Tomography [5]
  • Subtomogram averaging [3]

Resolution

  • < 2Å [5]
  • ≥ 2Å and < 3Å [40]
  • ≥ 3Å and < 4Å [31]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 12Å and < 16Å [2]
  • ≥ 30Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [14]
  • 500-1000 kDa [20]
  • 1-2 MDa [27]
  • 2-5 MDa [6]
  • 5-10 MDa [1]
  • > 10 MDa [2]

Release Date

  • 2025 [23]
  • 2024 [13]
  • 2023 [11]
  • 2022 [14]
  • 2021 [14]
  • 2020 [2]
  • 2019 [8]
  • 2017 [3]
  • 2016 [1]
  • 2015 [1]

Author by name

  • Shen JR [20]
  • Sui SF [19]
  • Liu Z [17]
  • Li M [12]
  • Li X [11]
  • Akita F [10]
  • Han G [10]
  • Kato K [10]
  • Kuang T [10]
  • Ma J [10]
  • Wang W [10]
  • Zhang X [10]
  • Fadeeva M [9]
  • Nelson N [9]
  • Brudvig GW [8]
  • Li A [8]
  • Debus RJ [7]
  • Flesher DA [7]
  • Li MJ [7]
  • Li XM [7]
  • Ma JF [7]
  • Shan J [7]
  • You X [7]
  • Caspy I [6]
  • Gisriel CJ [6]
  • Miyazaki N [6]
  • Shen L [6]
  • Wang Y [6]
  • Xiao Y [6]
  • Liu H [5]
  • Mazor Y [5]
  • Nakajima Y [5]
  • Niedzwiedzki DM [5]
  • Nixon PJ [5]
  • Sazanov LA [5]
  • Su X [5]
  • Sun S [5]
  • Tomar RS [5]
  • Vercellino I [5]
  • Wang J [5]
  • Xiao YN [5]
  • Zhao Z [5]
  • Akimoto S [4]
  • Batista VS [4]
  • Cheng J [4]
  • Dohmae N [4]
  • Han GY [4]
  • Ifuku K [4]
  • Klaiman D [4]
  • Liu ZF [4]
  • Nagao R [4]
  • Suzuki T [4]
  • Wang C [4]
  • Yang KR [4]
  • Armstrong WH [3]
  • Arnolds O [3]
  • Bohn S [3]
  • Cao P [3]
  • Chan A [3]
  • Engel BD [3]
  • Gunner MR [3]
  • Hamaguchi T [3]
  • Huang G [3]
  • Kashino Y [3]
  • Kouril R [3]
  • Krieger-liszkay A [3]
  • La Rocca R [3]
  • Langer JD [3]
  • Li Z [3]
  • Liauw P [3]
  • Liu J [3]
  • Meier-credo J [3]
  • Minagawa J [3]
  • Moller M [3]
  • Murata K [3]
  • Nowaczyk MM [3]
  • Rudack T [3]
  • Schuller JM [3]
  • Schuller SK [3]
  • Shan JY [3]
  • Shen LL [3]
  • Si L [3]
  • Song C [3]
  • Stoll R [3]
  • Su XD [3]
  • Tajkhorshid E [3]
  • Tsai PC [3]
  • Uchiyama I [3]
  • Wang WD [3]
  • Watanabe A [3]
  • Yonekura K [3]
  • Zabret J [3]
  • Zhang S [3]
  • Zhu Q [3]
  • Amelii A [2]
  • Bassi R [2]
  • Bryant DA [2]
  • Caferri R [2]
  • Chang W [2]
  • Chen JH [2]

Author by ORCID

  • Shen JR [18]
  • Liu Z [15]
  • Sui SF [14]
  • Wang W [9]
  • Kuang T [8]
  • Ma J [8]
  • Han G [8]
  • Nelson N [8]
  • Flesher DA [7]
  • Xiao Y [6]
  • Kato K [6]
  • Gisriel CJ [6]
  • Caspy I [6]
  • Li M [6]
  • Wang Y [6]
  • Mazor Y [5]
  • Vercellino I [5]
  • Shan J [5]
  • Zhao Z [5]
  • Nakajima Y [5]
  • Sazanov LA [5]
  • Li M [5]
  • Niedzwiedzki DM [5]
  • Tomar RS [5]
  • Miyazaki N [5]
  • Liu H [5]
  • Nixon PJ [5]
  • Zhang X [4]
  • Li A [4]
  • Brudvig GW [4]
  • Akita F [4]
  • Shen L [4]
  • Debus RJ [4]
  • Fadeeva M [3]
  • Yonekura K [3]
  • Watanabe A [3]
  • Krieger-liszkay A [3]
  • Kouril R [3]
  • Nagao R [3]
  • Tajkhorshid E [3]
  • Huang G [3]
  • Armstrong WH [3]
  • Bohn S [3]
  • Murata K [3]
  • Suzuki T [3]
  • Engel BD [3]
  • Minagawa J [3]
  • Zabret J [3]
  • Zhang S [3]
  • Akimoto S [3]
  • Schuller JM [3]
  • You X [3]
  • Uchiyama I [3]
  • Nowaczyk MM [3]
  • Sun S [3]
  • Hamaguchi T [3]
  • Meier-credo J [3]
  • Arnolds O [3]
  • Liu J [3]
  • Rudack T [3]
  • Gao Y [2]
  • Sobotka R [2]
  • Su X [2]
  • Wang P [2]
  • Chen M [2]
  • Song C [2]
  • Pi X [2]
  • Wang HW [2]
  • Dall'osto L [2]
  • Schroder WP [2]
  • Tsai PC [2]
  • Batista VS [2]
  • Klaiman D [2]
  • Ma J [2]
  • Cheng J [2]
  • Bassi R [2]
  • Kopecny D [2]
  • Wang J [2]
  • Cao P [2]
  • Pang X [2]
  • Zhu D [2]
  • Knoppova J [2]
  • Wei X [2]
  • Zhang X [2]
  • La Rocca R [2]
  • Murray JW [2]
  • Qi R [2]
  • Caferri R [2]
  • Tian L [2]
  • You T [2]
  • Kim E [2]
  • Li X [2]
  • Chen JH [2]
  • Komenda J [2]
  • Amelii A [2]
  • Ma X [2]
  • Yang W [1]
  • Xu C [1]
  • Zhao S [1]
  • Hussein R [1]

Journal

  • NAT COMMUN [17]
  • NAT PLANTS [16]
  • ELIFE [11]
  • TO BE PUBLISHED [10]
  • SCI ADV [8]
  • J BIOL CHEM [5]
  • PNAS [5]
  • SCIENCE [4]
  • NATURE [3]
  • COMMUN BIOL [2]
  • FRONT PLANT SCI [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIOCHIM BIOPHYS ACTA BIOENERG [1]
  • CELL RES [1]
  • CELLS [1]
  • INT J MOL SCI [1]
  • J STRUCT BIOL [1]
  • JOULE [1]
  • SCI REP [1]

Software

  • RELION [25]
  • CTFFIND [8]
  • CRYOSPARC [5]
  • CHIMERA, COOT [1]
  • CISTEM [1]
  • EMAN [1]
  • EMAN, RELION [1]
  • EMAN2 [1]
  • PHENIX [1]

Microscope

  • FEI TITAN KRIOS [62]
  • TFS KRIOS [11]
  • FEI TALOS ARCTICA [5]
  • TFS GLACIOS [4]
  • FEI TITAN [3]
  • JEOL CRYO ARM 300 [3]
  • FEI TECNAI F20 [1]
  • JEOL 2200FS [1]

Electron Source

  • FIELD EMISSION GUN [90]

Film or detector model

  • GATAN K3 6K X 4K [31]
  • GATAN K2 SUMMIT 4K X 4K [23]
  • GATAN K3 BIOQUANTUM 6K X 4K [16]
  • FEI FALCON III 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [5]
  • DIRECT ELECTRON DE-16 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • FEI FALCON II 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • OTHER [1]

External links

  • PDB [73]
  • ChEBI [72]
  • ChEMBL [72]
  • DrugBank [72]
  • AlphaFold DB [69]
  • UniProt [69]
  • Gene Ontology [68]
  • Pfam [68]
  • PDBe-Kb [67]
  • InterPro [58]
  • SCOP2 [13]
  • CATH [2]
  • EMPIAR [1]