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sample_name:"ParM"

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Protein [13]
  • Ligand [7]
  • Complex [6]
  • Sample [6]
  • Cellular component [1]

Organism

  • Clostridium botulinum [4]
  • Escherichia coli [4]
  • Clostridium botulinum [2]
  • Clostridium botulinum [2]
  • Clostridium botulinum [2]
  • Desulfitobacterium hafniense [1]

EM Method

  • Helical reconstruction [13]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 0-50 kDa [2]
  • 50-100 kDa [1]
  • 100-250 kDa [5]
  • 250-500 kDa [3]
  • 1-2 MDa [1]

Release Date

  • 2024 [1]
  • 2023 [4]
  • 2019 [2]
  • 2015 [2]
  • 2012 [1]
  • 2009 [3]

Author by name

  • Narita A [8]
  • Popp D [8]
  • Robinson RC [7]
  • Tanaka K [7]
  • Ali S [5]
  • Iwasaki K [5]
  • Kitaoku Y [5]
  • Koh A [5]
  • Mitsuoka K [5]
  • Miyazaki N [5]
  • Robinson R [4]
  • Lowe J [3]
  • Bharat TAM [2]
  • Dandey VP [2]
  • Egelman EH [2]
  • Galkin VE [2]
  • Koh F [2]
  • Lee LJ [2]
  • Mullins RD [2]
  • Murshudov GN [2]
  • Orlova A [2]
  • Rivera C [2]
  • Sachse C [2]
  • Tan YZ [2]
  • Fujii T [1]
  • Fujisawa T [1]
  • Gayathri P [1]
  • Iwasa M [1]
  • Maeda K [1]
  • Maeda Y [1]
  • Matsuo H [1]
  • Moller-jensen J [1]
  • Namba K [1]
  • Nitanai Y [1]
  • Oda T [1]
  • Onishi H [1]
  • Van Den Ent F [1]

Author by ORCID

  • Koh A [5]
  • Narita A [5]
  • Mitsuoka K [5]
  • Tan YZ [2]
  • Koh F [2]
  • Bharat TAM [2]
  • Sachse C [2]
  • Egelman EH [2]
  • Gayathri P [1]
  • Moller-jensen J [1]

Journal

  • J BIOL CHEM [5]
  • NAT COMMUN [2]
  • NATURE [2]
  • STRUCTURE [2]
  • EMBO J [1]
  • SCIENCE [1]

Software

  • RELION [7]
  • CTFFIND, EMAN2, SPRING [2]
  • CHIMERA [1]
  • EOS [1]
  • REFMAC, COOT, MAIN [1]
  • SITUS [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [9]
  • FEI TECNAI F20 [2]
  • JEOL 2010HC [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [12]
  • LAB6 [1]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • UniProt [13]
  • PDB [12]
  • AlphaFold DB [7]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • PDBe-Kb [7]
  • InterPro [1]
  • Pfam [1]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-37996
Download Map
3D View
ParM present of genome of Desufitobacterium hafniense - Dc-cParM1
Release date: Nov. 13, 2024
Resolution: 4.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8x1i
Q-score: 0.363

Ali S, Koh A, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robinson RC, Narita A

J Biol Chem (2025) 301 pp. 110351-110351 [ Pubmed: 40499760 DOI: doi:10.1016/j.jbc.2025.110351 ]

EMD-33007
Download Map
3D View
A Cbc-ParM filament with ADP
Release date: March 8, 2023
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x54
Q-score: 0.375

Ali S, Koh A, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robinson RC, Narita A

J Biol Chem (2025) 301 pp. 110351-110351 [ Pubmed: 40499760 DOI: doi:10.1016/j.jbc.2025.110351 ]

EMD-33008
Download Map
3D View
A Cbc-ParM filament with GTP and a short incubation time
Release date: March 8, 2023
Resolution: 8.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x55
Q-score: 0.168

Ali S, Koh A, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robinson RC, Narita A

J Biol Chem (2025) 301 pp. 110351-110351 [ Pubmed: 40499760 DOI: doi:10.1016/j.jbc.2025.110351 ]

EMD-33009
Download Map
3D View
A Cbc-ParM filament with GDP
Release date: March 8, 2023
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x56
Q-score: 0.486

Ali S, Koh A, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robinson RC, Narita A

J Biol Chem (2025) 301 pp. 110351-110351 [ Pubmed: 40499760 DOI: doi:10.1016/j.jbc.2025.110351 ]

EMD-33012
Download Map
3D View
A Cbc-ParM filament with GTP or GDPPi
Release date: March 8, 2023
Resolution: 6.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x59
Q-score: 0.189

Ali S, Koh A, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robinson RC, Narita A

J Biol Chem (2025) 301 pp. 110351-110351 [ Pubmed: 40499760 DOI: doi:10.1016/j.jbc.2025.110351 ]

EMD-9757
Download Map
3D View
pCBH ParM filament
Release date: June 19, 2019
Resolution: 4.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 6izr
Q-score: 0.23

Koh F, Narita A, Lee LJ, Tanaka K, Tan YZ, Dandey VP, Popp D, Robinson RC

Nat Commun (2019) 10 pp. 2856-2856 [ Pubmed: 31253774 DOI: doi:10.1038/s41467-019-10779-9 ]

EMD-9758
Download Map
3D View
pCBH ParM filament
Release date: June 19, 2019
Resolution: 4.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 6izv
Q-score: 0.362

Koh F, Narita A, Lee LJ, Tanaka K, Tan YZ, Dandey VP, Popp D, Robinson RC

Nat Commun (2019) 10 pp. 2856-2856 [ Pubmed: 31253774 DOI: doi:10.1038/s41467-019-10779-9 ]

EMD-2848
Download Map
3D View
actin-like ParM protein bound to ADP
Release date: May 6, 2015
Resolution: 11.0 Å
EM Method: Helical reconstruction

Bharat TAM, Murshudov GN, Sachse C, Lowe J

Nature (2015) 523 pp. 106-110 [ DOI: doi:10.1038/nature14356 Pubmed: 25915019 ]

EMD-2850
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3D View
actin-like ParM protein bound to AMPPNP
Release date: April 22, 2015
Resolution: 4.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 5aey
Q-score: 0.398

Bharat TAM, Murshudov GN, Sachse C, Lowe J

Nature (2015) 523 pp. 106-110 [ DOI: doi:10.1038/nature14356 Pubmed: 25915019 ]

EMD-1980
Download Map
3D View
CryoEM map of ParM filament at 7.2 Angstrom resolution
Release date: Nov. 14, 2012
Resolution: 7.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 4a6j
Q-score: 0.095

Gayathri P, Fujii T, Moller-Jensen J, van den Ent F, Namba K, Lowe J

Science (2012) 338 pp. 1334-1337 [ DOI: doi:10.1126/science.1229091 Pubmed: 23112295 ]

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Protein [13]
  • Ligand [7]
  • Complex [6]
  • Sample [6]
  • Cellular component [1]

Organism

  • Clostridium botulinum [4]
  • Escherichia coli [4]
  • Clostridium botulinum [2]
  • Clostridium botulinum [2]
  • Clostridium botulinum [2]
  • Desulfitobacterium hafniense [1]

EM Method

  • Helical reconstruction [13]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 0-50 kDa [2]
  • 50-100 kDa [1]
  • 100-250 kDa [5]
  • 250-500 kDa [3]
  • 1-2 MDa [1]

Release Date

  • 2024 [1]
  • 2023 [4]
  • 2019 [2]
  • 2015 [2]
  • 2012 [1]
  • 2009 [3]

Author by name

  • Narita A [8]
  • Popp D [8]
  • Robinson RC [7]
  • Tanaka K [7]
  • Ali S [5]
  • Iwasaki K [5]
  • Kitaoku Y [5]
  • Koh A [5]
  • Mitsuoka K [5]
  • Miyazaki N [5]
  • Robinson R [4]
  • Lowe J [3]
  • Bharat TAM [2]
  • Dandey VP [2]
  • Egelman EH [2]
  • Galkin VE [2]
  • Koh F [2]
  • Lee LJ [2]
  • Mullins RD [2]
  • Murshudov GN [2]
  • Orlova A [2]
  • Rivera C [2]
  • Sachse C [2]
  • Tan YZ [2]
  • Fujii T [1]
  • Fujisawa T [1]
  • Gayathri P [1]
  • Iwasa M [1]
  • Maeda K [1]
  • Maeda Y [1]
  • Matsuo H [1]
  • Moller-jensen J [1]
  • Namba K [1]
  • Nitanai Y [1]
  • Oda T [1]
  • Onishi H [1]
  • Van Den Ent F [1]

Author by ORCID

  • Koh A [5]
  • Narita A [5]
  • Mitsuoka K [5]
  • Tan YZ [2]
  • Koh F [2]
  • Bharat TAM [2]
  • Sachse C [2]
  • Egelman EH [2]
  • Gayathri P [1]
  • Moller-jensen J [1]

Journal

  • J BIOL CHEM [5]
  • NAT COMMUN [2]
  • NATURE [2]
  • STRUCTURE [2]
  • EMBO J [1]
  • SCIENCE [1]

Software

  • RELION [7]
  • CTFFIND, EMAN2, SPRING [2]
  • CHIMERA [1]
  • EOS [1]
  • REFMAC, COOT, MAIN [1]
  • SITUS [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [9]
  • FEI TECNAI F20 [2]
  • JEOL 2010HC [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [12]
  • LAB6 [1]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • UniProt [13]
  • PDB [12]
  • AlphaFold DB [7]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • PDBe-Kb [7]
  • InterPro [1]
  • Pfam [1]