Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
sample_name:"OCT2"

Filter By

Current Database

  • EMDB [4]

Current status

  • REL [4]

Sample type

  • Complex [4]
  • Ligand [4]
  • Protein [4]

Organism

  • Caldimonas thermodepolymerans [2]
  • Ostreococcus tauri [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [4]

Resolution

  • < 2Å [1]
  • ≥ 3Å and < 4Å [3]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [2]
  • 2023 [1]

Author by name

  • Kuklewicz J [2]
  • Zimmer J [2]
  • Borgnia MJ [1]
  • Butay KJ [1]
  • Fedor JG [1]
  • Fujii R [1]
  • Genji K [1]
  • Guterres H [1]
  • Hideaki T [1]
  • Im W [1]
  • Ishii A [1]
  • Keiichi N [1]
  • Kim E [1]
  • Kubota M [1]
  • Kurisu G [1]
  • Lee S-Y [1]
  • Lee SY [1]
  • Minagawa J [1]
  • Miyata T [1]
  • Namba K [1]
  • Ritsuko F [1]
  • Seki S [1]
  • Soichiro S [1]
  • Suo Y [1]
  • Tanaka H [1]
  • Tomoko M [1]
  • Wright NJ [1]

Author by ORCID

  • Kuklewicz J [2]
  • Zimmer J [2]
  • Im W [1]
  • Guterres H [1]
  • Butay KJ [1]
  • Borgnia MJ [1]
  • Lee SY [1]
  • Minagawa J [1]
  • Genji K [1]
  • Tomoko M [1]
  • Wright NJ [1]
  • Suo Y [1]
  • Ritsuko F [1]
  • Hideaki T [1]
  • Keiichi N [1]
  • Kim E [1]
  • Fedor JG [1]
  • Soichiro S [1]
  • Kubota M [1]
  • Ishii A [1]

Journal

  • NATURE [2]
  • BIORXIV [1]
  • NAT STRUCT MOL BIOL [1]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [3]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • FEI FALCON III 4K X 4K [2]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • UniProt [4]
  • Gene Ontology [3]
  • InterPro [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • ChEBI [2]
  • ChEMBL [2]
  • EMPIAR [2]
  • Complex Portal [1]
  • DrugBank [1]
Sort by: Download
Showing 1 - 4 of 4. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-64036
Download Map
3D View
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Release date: Dec. 31, 2025
Resolution: 1.94 Å
EM Method: Single-particle
Fitted PDBs: 9uc6
Q-score: 0.77

Soichiro S, Kubota M, Ishii A, Kim E, Tomoko M, Hideaki T, Keiichi N, Genji K, Minagawa J, Ritsuko F

To Be Published

EMD-41602
Download Map
3D View
Raw data
EMPIAR-12029
S. thermodepolymerans KpsM-KpsE in Glycolipid 2 state with rigid body fitted KpsT
Release date: April 17, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8tt3
Q-score: 0.421

Kuklewicz J, Zimmer J

Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]

EMD-41626
Download Map
3D View
Raw data
EMPIAR-12029
S. thermodepolymerans KpsM-KpsE in Glycolipid 1 state with rigid body fitted KpsT
Release date: April 17, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8tun
Q-score: 0.439

Kuklewicz J, Zimmer J

Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]

EMD-28589
Download Map
3D View
Cryo-EM structure of the organic cation transporter 2 in complex with 1-methyl-4-phenylpyridinium
Release date: May 31, 2023
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 8et9
Q-score: 0.395

Suo Y, Wright NJ, Guterres H, Fedor JG, Butay KJ, Borgnia MJ, Im W, Lee SY

Nat Struct Mol Biol (2023) 30 pp. 1001-1011 [ Pubmed: 37291422 DOI: doi:10.1038/s41594-023-01017-4 ]

Sort by: Download
Showing 1 - 4 of 4. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [4]

Current status

  • REL [4]

Sample type

  • Complex [4]
  • Ligand [4]
  • Protein [4]

Organism

  • Caldimonas thermodepolymerans [2]
  • Ostreococcus tauri [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [4]

Resolution

  • < 2Å [1]
  • ≥ 3Å and < 4Å [3]

Model molecular weight

  • 50-100 kDa [1]
  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [2]
  • 2023 [1]

Author by name

  • Kuklewicz J [2]
  • Zimmer J [2]
  • Borgnia MJ [1]
  • Butay KJ [1]
  • Fedor JG [1]
  • Fujii R [1]
  • Genji K [1]
  • Guterres H [1]
  • Hideaki T [1]
  • Im W [1]
  • Ishii A [1]
  • Keiichi N [1]
  • Kim E [1]
  • Kubota M [1]
  • Kurisu G [1]
  • Lee S-Y [1]
  • Lee SY [1]
  • Minagawa J [1]
  • Miyata T [1]
  • Namba K [1]
  • Ritsuko F [1]
  • Seki S [1]
  • Soichiro S [1]
  • Suo Y [1]
  • Tanaka H [1]
  • Tomoko M [1]
  • Wright NJ [1]

Author by ORCID

  • Kuklewicz J [2]
  • Zimmer J [2]
  • Im W [1]
  • Guterres H [1]
  • Butay KJ [1]
  • Borgnia MJ [1]
  • Lee SY [1]
  • Minagawa J [1]
  • Genji K [1]
  • Tomoko M [1]
  • Wright NJ [1]
  • Suo Y [1]
  • Ritsuko F [1]
  • Hideaki T [1]
  • Keiichi N [1]
  • Kim E [1]
  • Fedor JG [1]
  • Soichiro S [1]
  • Kubota M [1]
  • Ishii A [1]

Journal

  • NATURE [2]
  • BIORXIV [1]
  • NAT STRUCT MOL BIOL [1]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [3]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • FEI FALCON III 4K X 4K [2]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • UniProt [4]
  • Gene Ontology [3]
  • InterPro [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • ChEBI [2]
  • ChEMBL [2]
  • EMPIAR [2]
  • Complex Portal [1]
  • DrugBank [1]